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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    98401 5jmp:A (1.7) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    98402 5jmp:B (1.7) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    98403 5jmq:A (1.795) BS01 CA ? GO:0008168 ... Q3UKX1 27879050
    98404 5jms:A (2.3) BS02 CA ? GO:0004672 ... Q9BJF5 N/A
    98405 5jmu:A (1.54) BS01 ZN ? GO:0005975 ... C4ZEZ9 N/A
    98406 5jmv:A (3.38647) BS02 MG 2.3.1.234
    2.7.11.1
    GO:0000408 ... Q58530 27302132
    98407 5jmv:B (3.38647) BS02 MG 2.3.1.234
    2.7.11.1
    GO:0000408 ... Q58530 27302132
    98408 5jmv:C (3.38647) BS02 MG 2.3.1.234
    2.7.11.1
    GO:0000408 ... Q58530 27302132
    98409 5jmw:A (1.55) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    98410 5jmw:B (1.55) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    98411 5jmx:A (1.44) BS01 ZN 3.5.2.6 GO:0008270 ... P04190 29655609
    98412 5jmx:A (1.44) BS02 ZN 3.5.2.6 GO:0008270 ... P04190 29655609
    98413 5jmy:A (2.0) BS01 ZN 3.4.24.11 GO:0001786 ... P08473 27302413
    98414 5jmy:B (2.0) BS01 ZN 3.4.24.11 GO:0001786 ... P08473 27302413
    98415 5jmz:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    98416 5jn2:A (2.2) BS02 CA ? GO:0004672 ... Q9BJF5 N/A
    98417 5jn3:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    98418 5jn5:A (1.75) BS01 CA 5.4.2.2 GO:0000287 ... P36871 28117557
    98419 5jn5:B (1.75) BS01 CA 5.4.2.2 GO:0000287 ... P36871 28117557
    98420 5jn7:A (1.517) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    98421 5jn8:A (1.85) BS02 ZN 4.2.1.1 GO:0004089 ... P22748 28975383
    98422 5jn8:B (1.85) BS02 ZN 4.2.1.1 GO:0004089 ... P22748 28975383
    98423 5jn8:C (1.85) BS02 ZN 4.2.1.1 GO:0004089 ... P22748 28975383
    98424 5jn8:D (1.85) BS02 ZN 4.2.1.1 GO:0004089 ... P22748 28975383
    98425 5jn9:A (2.1) BS01 ZN 4.2.1.1 GO:0004089 ... P22748 28975383
    98426 5jn9:B (2.1) BS01 ZN 4.2.1.1 GO:0004089 ... P22748 28975383
    98427 5jn9:C (2.1) BS01 ZN 4.2.1.1 GO:0004089 ... P22748 28975383
    98428 5jn9:D (2.1) BS01 ZN 4.2.1.1 GO:0004089 ... P22748 28975383
    98429 5jna:A (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... P22748 28975383
    98430 5jna:B (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... P22748 28975383
    98431 5jna:C (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... P22748 28975383
    98432 5jna:D (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... P22748 28975383
    98433 5jnb:B (2.486) BS01 MG 2.7.7.19 N/A O17087 27288313
    98434 5jnc:A (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... P22748 28975383
    98435 5jnc:B (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... P22748 28975383
    98436 5jnc:C (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... P22748 28975383
    98437 5jnc:D (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... P22748 28975383
    98438 5jne:A (2.85) BS01 ZN 2.3.2.-
    6.3.2.-
    GO:0008270 ... Q04195
    Q12306
    27509863
    98439 5jne:E (2.85) BS01 ZN 2.3.2.-
    6.3.2.-
    GO:0008270 ... Q04195
    Q12306
    27509863
    98440 5jnl:A (1.6) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    98441 5jnl:B (1.6) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    98442 5jo0:A (1.8) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    98443 5jo0:B (1.8) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    98444 5jo1:B (2.3) BS01 MG 3.1.3.16 GO:0004722 ... Q9CAJ0 27518563
    98445 5jo1:B (2.3) BS02 MG 3.1.3.16 GO:0004722 ... Q9CAJ0 27518563
    98446 5jo2:B (2.42) BS01 MG 3.1.3.16 GO:0004722 ... Q9CAJ0 27518563
    98447 5jo3:B (1.49) BS01 ZN 3.1.4.35 GO:0004114 ... O76074 N/A
    98448 5job:A (1.45) BS02 CA 3.1.31.1 N/A P00644 N/A
    98449 5jog:A (2.46) BS01 ZN 3.4.-.- GO:0008233 ... Q92905 27774986
    98450 5joh:A (1.99) BS01 ZN 3.4.-.- GO:0008233 ... Q92905 27774986
    98451 5joj:A (-1.00) BS01 CA ? GO:0005509 ... P13796 28145401
    98452 5joj:A (-1.00) BS02 CA ? GO:0005509 ... P13796 28145401
    98453 5joz:A (2.28) BS01 CA 3.2.1.55 GO:0000272 ... A7LXU0 27466444
    98454 5joz:B (2.28) BS01 CA 3.2.1.55 GO:0000272 ... A7LXU0 27466444
    98455 5jp0:A (2.3) BS02 MG 3.2.1.21 GO:0000272 ... A7LXU3 27466444
    98456 5jp0:B (2.3) BS02 MG 3.2.1.21 GO:0000272 ... A7LXU3 27466444
    98457 5jp2:A (2.4) BS02 ZN ? N/A A0A0R4IA99 27237791
    98458 5jp2:B (2.4) BS02 ZN ? N/A A0A0R4IA99 27237791
    98459 5jp6:A (1.5) BS01 ZN 3.5.1.- GO:0005975 ... Q6MI90 27211869
    98460 5jpf:A (2.3993) BS02 MN 3.1.3.16 GO:0004722 ... C4YM68 27578752
    98461 5jpf:A (2.3993) BS03 MN 3.1.3.16 GO:0004722 ... C4YM68 27578752
    98462 5jpv:A (1.9) BS02 CA ? N/A P07306 28230359
    98463 5jpv:A (1.9) BS03 CA ? N/A P07306 28230359
    98464 5jpv:A (1.9) BS04 CA ? N/A P07306 28230359
    98465 5jpv:B (1.9) BS02 CA ? N/A P07306 28230359
    98466 5jpv:B (1.9) BS03 CA ? N/A P07306 28230359
    98467 5jpv:B (1.9) BS04 CA ? N/A P07306 28230359
    98468 5jpx:A (-1.00) BS01 ZN 2.3.2.27 GO:0008270 ... P19474 28753623
    98469 5jq0:A (1.4) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 27722534
    98470 5jq1:A (1.83) BS01 CA ? N/A P07306 28230359
    98471 5jq1:A (1.83) BS02 CA ? N/A P07306 28230359
    98472 5jq1:A (1.83) BS03 CA ? N/A P07306 28230359
    98473 5jq1:B (1.83) BS01 CA ? N/A P07306 28230359
    98474 5jq1:B (1.83) BS02 CA ? N/A P07306 28230359
    98475 5jq1:B (1.83) BS04 CA ? N/A P07306 28230359
    98476 5jqa:A (1.8) BS02 CA ? GO:0000086 ... P0DP23 N/A
    98477 5jqa:A (1.8) BS03 CA ? GO:0000086 ... P0DP23 N/A
    98478 5jqa:A (1.8) BS04 CA ? GO:0000086 ... P0DP23 N/A
    98479 5jqa:A (1.8) BS05 CA ? GO:0000086 ... P0DP23 N/A
    98480 5jqg:A (2.24) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 27357539
    98481 5jqg:C (2.24) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 27357539
    98482 5jqj:A (1.67) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    98483 5jqj:A (1.67) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    98484 5jqj:A (1.67) BS03 MG 3.5.2.6 GO:0008270 ... C7C422 N/A
    98485 5jqk:A (2.35) BS01 MN 3.4.11.9 GO:0070006 ... A0A144A2H0 27462122
    98486 5jqk:A (2.35) BS02 MN 3.4.11.9 GO:0070006 ... A0A144A2H0 27462122
    98487 5jqk:B (2.35) BS01 MN 3.4.11.9 GO:0070006 ... A0A144A2H0 27462122
    98488 5jqk:B (2.35) BS02 MN 3.4.11.9 GO:0070006 ... A0A144A2H0 27462122
    98489 5jqp:B (2.2) BS01 CA ? N/A G0S9M2 27576940
    98490 5jqp:B (2.2) BS02 CA ? N/A G0S9M2 27576940
    98491 5jqt:A (1.36) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 27722534
    98492 5jqy:A (1.99) BS02 MN 1.14.11.16 GO:0018193 ... Q12797 31659163
    98493 5jr1:H (1.601) BS01 ZN N/A N/A N/A 27299673
    98494 5jr6:A (2.3) BS02 MN 3.4.11.9 GO:0070006 ... A0A144A2H0 27462122
    98495 5jr6:A (2.3) BS03 MN 3.4.11.9 GO:0070006 ... A0A144A2H0 27462122
    98496 5jr6:B (2.3) BS01 MN 3.4.11.9 GO:0070006 ... A0A144A2H0 27462122
    98497 5jr6:B (2.3) BS02 MN 3.4.11.9 GO:0070006 ... A0A144A2H0 27462122
    98498 5jrc:A (1.9) BS01 CA ? GO:0003723 ... Q74ML9 27596600
    98499 5jrc:C (1.9) BS02 CA ? GO:0003723 ... Q74ML9 27596600
    98500 5jrc:C (1.9) BS03 CA ? GO:0003723 ... Q74ML9 27596600
    98501 5jrc:D (1.9) BS01 CA ? GO:0003723 ... Q74ML9 27596600
    98502 5jrd:L (1.2) BS02 MG 1.12.99.6 GO:0005515 ... P0ACD8 28001048
    98503 5jrd:M (1.2) BS02 MG 1.12.99.6 GO:0005515 ... P0ACD8 28001048
    98504 5jrh:A (1.644) BS03 MG 6.2.1.1 GO:0003987 ... Q8ZKF6 27974467
    98505 5jrh:B (1.644) BS03 MG 6.2.1.1 GO:0003987 ... Q8ZKF6 27974467
    98506 5jrj:A (1.7) BS03 CA ? GO:0003677 ... D8IYL4 27447485
    98507 5jrr:A (1.9) BS01 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    98508 5jrr:A (1.9) BS02 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    98509 5jrr:A (1.9) BS03 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    98510 5jrr:A (1.9) BS04 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    98511 5js1:A (2.499) BS02 MG 3.1.26.n2 GO:0000340 ... Q9UKV8 27380263
    98512 5js2:A (2.954) BS02 MG 3.1.26.n2 GO:0000340 ... Q9UKV8 27380263
    98513 5js3:E (1.16) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 27933956
    98514 5js3:E (1.16) BS02 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    98515 5js3:E (1.16) BS03 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    98516 5js3:E (1.16) BS04 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    98517 5js3:E (1.16) BS05 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    98518 5jsh:B (1.3) BS04 FE2 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    98519 5jsk:B (0.95) BS03 FE2 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    98520 5jso:A (2.0) BS01 FE 4.4.1.3 GO:0016829 ... D0CY60 27755868
    98521 5jso:B (2.0) BS01 FE 4.4.1.3 GO:0016829 ... D0CY60 27755868
    98522 5jsp:A (2.2) BS01 FE 4.4.1.3 GO:0016829 ... D0CY60 27755868
    98523 5jsp:B (2.2) BS01 FE 4.4.1.3 GO:0016829 ... D0CY60 27755868
    98524 5jsr:A (2.5) BS01 FE 4.4.1.3 GO:0016829 ... D0CY60 27755868
    98525 5jsr:B (2.5) BS01 FE 4.4.1.3 GO:0016829 ... D0CY60 27755868
    98526 5jss:E (1.19) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 27933956
    98527 5jss:E (1.19) BS02 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    98528 5jss:E (1.19) BS03 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    98529 5jss:E (1.19) BS04 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    98530 5jss:E (1.19) BS05 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    98531 5jsu:B (1.4) BS04 FE2 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    98532 5jsv:A (1.17) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    98533 5jsw:A (1.22) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    98534 5jsx:A (2.81) BS01 MN 2.4.1.266 GO:0016757 ... A5U1Q6 28625787
    98535 5jsy:B (1.04) BS03 FE2 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    98536 5jt0:A (2.8) BS01 MN 2.4.1.266 GO:0000287 ... P9WMW9 28625787
    98537 5jt1:B (1.35) BS04 FE2 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    98538 5jt5:A (1.21) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    98539 5jt6:A (1.54) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    98540 5jt7:A (1.7) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    98541 5jt9:E (1.26) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 27933956
    98542 5jt9:E (1.26) BS02 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    98543 5jt9:E (1.26) BS03 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    98544 5jt9:E (1.26) BS04 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    98545 5jt9:E (1.26) BS05 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    98546 5jtc:A (2.24) BS02 MN 1.14.11.16 GO:0018193 ... Q12797 32457455
    98547 5jtg:E (3.05) BS01 MG ? GO:0000287 ... Q9WZ31 N/A
    98548 5jth:A (1.84) BS02 CA ? GO:0000086 ... P0DP23 N/A
    98549 5jth:A (1.84) BS03 CA ? GO:0000086 ... P0DP23 N/A
    98550 5jth:A (1.84) BS04 CA ? GO:0000086 ... P0DP23 N/A
    98551 5jth:A (1.84) BS05 CA ? GO:0000086 ... P0DP23 N/A
    98552 5ju7:A (2.05) BS01 ZN ? GO:0000160 ... P23890 28432336
    98553 5ju7:A (2.05) BS02 ZN ? GO:0000160 ... P23890 28432336
    98554 5ju7:A (2.05) BS03 ZN ? GO:0000160 ... P23890 28432336
    98555 5ju7:A (2.05) BS04 ZN ? GO:0000160 ... P23890 28432336
    98556 5juc:A (2.8) BS02 MN 2.4.1.266 GO:0000287 ... P9WMW9 28625787
    98557 5juh:A (1.35) BS01 CA ? N/A A1YIY3 28808685
    98558 5juh:A (1.35) BS02 CA ? N/A A1YIY3 28808685
    98559 5juh:A (1.35) BS03 CA ? N/A A1YIY3 28808685
    98560 5juh:A (1.35) BS04 CA ? N/A A1YIY3 28808685
    98561 5juh:A (1.35) BS05 CA ? N/A A1YIY3 28808685
    98562 5juh:A (1.35) BS06 CA ? N/A A1YIY3 28808685
    98563 5juh:A (1.35) BS07 CA ? N/A A1YIY3 28808685
    98564 5jum:A (2.6) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27556902
    98565 5jum:A (2.6) BS05 CA 2.7.7.7 GO:0003684 ... Q9Y253 27556902
    98566 5jup:DC (3.5) BS05 MG 3.6.5.- GO:0003746 ... P32324 27159452
    98567 5jvd:A (2.393) BS02 CA 3.6.5.- GO:0000226 ... P81947 27224920
    98568 5jvd:C (2.393) BS02 CA 3.6.5.- GO:0000226 ... P81947 27224920
    98569 5jvd:F (2.393) BS01 MG N/A GO:0036211 ... N/A 27224920
    98570 5jvg:M (3.428) BS02 MG ? GO:0003735 ... Q9RWB4 27791159
    98571 5jvg:Q (3.428) BS02 MG ? GO:0000027 ... Q9RXK0 27791159
    98572 5jvi:E (1.12) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 27933956
    98573 5jvi:E (1.12) BS02 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    98574 5jvi:E (1.12) BS03 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    98575 5jvi:E (1.12) BS04 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    98576 5jvi:E (1.12) BS05 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    98577 5jvj:A (2.898) BS02 MG 2.7.9.1 GO:0003824 ... P22221 28358005
    98578 5jvj:B (2.898) BS02 MG 2.7.9.1 GO:0003824 ... P22221 28358005
    98579 5jvl:A (2.9) BS02 MG 2.7.9.1 GO:0003824 ... P22221 28358005
    98580 5jvl:A (2.9) BS04 MG 2.7.9.1 GO:0003824 ... P22221 28358005
    98581 5jvl:B (2.9) BS02 MG 2.7.9.1 GO:0003824 ... P22221 28358005
    98582 5jvl:C (2.9) BS03 MG 2.7.9.1 GO:0003824 ... P22221 28358005
    98583 5jvl:D (2.9) BS02 MG 2.7.9.1 GO:0003824 ... P22221 28358005
    98584 5jvl:D (2.9) BS04 MG 2.7.9.1 GO:0003824 ... P22221 28358005
    98585 5jvn:A (2.9) BS03 MG 2.7.9.1 GO:0003824 ... Q42736 28358005
    98586 5jw7:B (2.849) BS01 ZN 2.3.2.27 N/A Q9BRZ2 28084320
    98587 5jw7:B (2.849) BS02 ZN 2.3.2.27 N/A Q9BRZ2 28084320
    98588 5jwa:A (2.162) BS02 MG 1.6.5.9 GO:0000166 ... Q8I302 28195463
    98589 5jwa:A (2.162) BS03 MG 1.6.5.9 GO:0000166 ... Q8I302 28195463
    98590 5jwa:A (2.162) BS04 MG 1.6.5.9 GO:0000166 ... Q8I302 28195463
    98591 5jwa:A (2.162) BS05 MG 1.6.5.9 GO:0000166 ... Q8I302 28195463
    98592 5jwa:H (2.162) BS03 MG 1.6.5.9 GO:0000166 ... Q8I302 28195463
    98593 5jwa:H (2.162) BS04 MG 1.6.5.9 GO:0000166 ... Q8I302 28195463
    98594 5jwa:H (2.162) BS05 MG 1.6.5.9 GO:0000166 ... Q8I302 28195463
    98595 5jwa:H (2.162) BS06 MG 1.6.5.9 GO:0000166 ... Q8I302 28195463
    98596 5jwb:A (2.7) BS02 MG 1.6.5.9 GO:0000166 ... Q8I302 28195463
    98597 5jwb:A (2.7) BS03 MG 1.6.5.9 GO:0000166 ... Q8I302 28195463
    98598 5jwb:A (2.7) BS04 MG 1.6.5.9 GO:0000166 ... Q8I302 28195463
    98599 5jwb:A (2.7) BS05 MG 1.6.5.9 GO:0000166 ... Q8I302 28195463
    98600 5jwb:H (2.7) BS03 MG 1.6.5.9 GO:0000166 ... Q8I302 28195463

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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