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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    98001 5j8b:7 (2.6) BS03 MG ? GO:0003735 ... P80340 27092003
    98002 5j8b:9 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 27092003
    98003 5j8b:D (2.6) BS03 MG ? GO:0002181 ... P60405 27092003
    98004 5j8b:D (2.6) BS04 MG ? GO:0002181 ... P60405 27092003
    98005 5j8b:D (2.6) BS05 MG ? GO:0002181 ... P60405 27092003
    98006 5j8b:D (2.6) BS06 MG ? GO:0002181 ... P60405 27092003
    98007 5j8b:D (2.6) BS07 MG ? GO:0002181 ... P60405 27092003
    98008 5j8b:D (2.6) BS08 MG ? GO:0002181 ... P60405 27092003
    98009 5j8b:E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 27092003
    98010 5j8b:E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 27092003
    98011 5j8b:F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 27092003
    98012 5j8b:F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 27092003
    98013 5j8b:F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 27092003
    98014 5j8b:F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 27092003
    98015 5j8b:G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 27092003
    98016 5j8b:N (2.6) BS02 MG ? GO:0003729 ... P60488 27092003
    98017 5j8b:P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 27092003
    98018 5j8b:Q (2.6) BS04 MG ? GO:0000049 ... P60489 27092003
    98019 5j8b:Q (2.6) BS05 MG ? GO:0000049 ... P60489 27092003
    98020 5j8b:R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 27092003
    98021 5j8b:R (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 27092003
    98022 5j8b:U (2.6) BS02 MG ? GO:0000027 ... P60491 27092003
    98023 5j8b:V (2.6) BS02 MG ? GO:0003723 ... P60492 27092003
    98024 5j8b:W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 27092003
    98025 5j8b:X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 27092003
    98026 5j8b:Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 27092003
    98027 5j8b:k (2.6) BS02 MG ? GO:0003735 ... P80376 27092003
    98028 5j8b:l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 27092003
    98029 5j8b:l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 27092003
    98030 5j8b:m (2.6) BS02 MG ? GO:0000049 ... P80377 27092003
    98031 5j8b:n (2.6) BS02 MG N/A GO:0003735 ... N/A 27092003
    98032 5j8b:n (2.6) BS03 ZN N/A GO:0003735 ... N/A 27092003
    98033 5j8b:z (2.6) BS05 MG 3.6.5.-
    3.6.5.n1    		 GO:0003735 ... Q5SKA7
    Q5SLQ1    		 27092003
    98034 5j8b:z (2.6) BS06 MG 3.6.5.-
    3.6.5.n1    		 GO:0003735 ... Q5SKA7
    Q5SLQ1    		 27092003
    98035 5j8c:A (2.17) BS01 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q9H7Z6 27382063
    98036 5j8f:A (2.6) BS01 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q9H7Z6 27382063
    98037 5j8h:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 27499441
    98038 5j8h:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 27499441
    98039 5j8l:A (1.73) BS01 MN 5.1.3.31 GO:0016853 ... O50580 27368739
    98040 5j8l:B (1.73) BS02 MN 5.1.3.31 GO:0016853 ... O50580 27368739
    98041 5j8l:C (1.73) BS01 MN 5.1.3.31 GO:0016853 ... O50580 27368739
    98042 5j8l:D (1.73) BS02 MN 5.1.3.31 GO:0016853 ... O50580 27368739
    98043 5j8n:A (1.44) BS01 MG 3.1.11.2 GO:0003677 ... Q8PSD1 N/A
    98044 5j8p:A (1.554) BS01 MG ? N/A P62987 N/A
    98045 5j8s:A (1.5) BS01 MG 1.16.3.1 GO:0004322 ... P07798 27650996
    98046 5j8t:A (-1.00) BS01 CA N/A N/A N/A N/A
    98047 5j8w:A (1.11) BS01 FE2 1.16.3.1 GO:0004322 ... P07798 27650996
    98048 5j8z:A (1.7) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 27316543
    98049 5j91:AB (2.96) BS02 ZN ? GO:0000028 ... P0A7V0 27382179
    98050 5j91:C5 (2.96) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    98051 5j91:D5 (2.96) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    98052 5j92:A (1.95) BS01 FE2 1.14.11.- GO:0016491 ... Q13Q05 N/A
    98053 5j92:B (1.95) BS01 FE2 1.14.11.- GO:0016491 ... Q13Q05 N/A
    98054 5j92:C (1.95) BS01 FE2 1.14.11.- GO:0016491 ... Q13Q05 N/A
    98055 5j92:D (1.95) BS01 FE2 1.14.11.- GO:0016491 ... Q13Q05 N/A
    98056 5j93:A (1.1) BS01 FE2 1.16.3.1 GO:0004322 ... P07798 27650996
    98057 5j93:A (1.1) BS02 FE2 1.16.3.1 GO:0004322 ... P07798 27650996
    98058 5j9k:A (2.55) BS02 ZN ? GO:0006355 ... Q5NBT9 28630893
    98059 5j9k:B (2.55) BS02 ZN ? GO:0006355 ... Q5NBT9 28630893
    98060 5j9m:A (1.33) BS02 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    98061 5j9n:A (1.64) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    98062 5j9o:A (1.41) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    98063 5j9v:A (1.16) BS01 FE2 1.16.3.1 GO:0004322 ... P07798 27650996
    98064 5j9v:A (1.16) BS02 FE2 1.16.3.1 GO:0004322 ... P07798 27650996
    98065 5ja5:A (2.0) BS02 ZN ? GO:0006355 ... Q5NBT9 28630893
    98066 5jac:A (1.18) BS01 FE2 1.16.3.1 GO:0004322 ... P07798 27650996
    98067 5jac:A (1.18) BS02 FE2 1.16.3.1 GO:0004322 ... P07798 27650996
    98068 5jaj:A (1.5) BS03 ZN 3.6.4.13 GO:0003677 ... G0YYQ5 27203181
    98069 5jao:A (2.06) BS01 CA 3.1.1.47 GO:0003847 ... Q13093 27167608
    98070 5jav:A (1.895) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    98071 5jax:A (1.486) BS02 CA 2.7.11.12 GO:0004692 ... Q13976 28793191
    98072 5jax:A (1.486) BS03 CA 2.7.11.12 GO:0004692 ... Q13976 28793191
    98073 5jaz:A (1.4) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    98074 5jaz:B (1.4) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    98075 5jb2:A (2.2) BS03 ZN 3.6.4.13 GO:0003677 ... G0YYQ5 27203181
    98076 5jb8:S (1.45) BS01 CA 3.4.21.22 GO:0004252 ... P00740 27208168
    98077 5jb9:S (1.3) BS02 CA 3.4.21.22 GO:0004252 ... P00740 27208168
    98078 5jba:S (1.4) BS01 CA 3.4.21.22 GO:0004252 ... P00740 27208168
    98079 5jbb:S (1.56) BS01 CA 3.4.21.22 GO:0004252 ... P00740 27208168
    98080 5jbc:S (1.9) BS01 CA 3.4.21.22 GO:0004252 ... P00740 27208168
    98081 5jbd:A (1.8) BS01 CA 2.4.1.5 GO:0009250 ... Q5SBM0 28065507
    98082 5jbd:B (1.8) BS01 CA 2.4.1.5 GO:0009250 ... Q5SBM0 28065507
    98083 5jbe:A (2.1) BS05 CA 2.4.1.5 GO:0009250 ... Q5SBM0 28065507
    98084 5jbe:B (2.1) BS07 CA 2.4.1.5 GO:0009250 ... Q5SBM0 28065507
    98085 5jbf:A (2.19) BS08 CA 2.4.1.5 GO:0009250 ... Q5SBM0 28065507
    98086 5jbf:B (2.19) BS10 CA 2.4.1.5 GO:0009250 ... Q5SBM0 28065507
    98087 5jbg:A (2.0) BS02 ZN 3.6.4.13 GO:0003677 ... G0YYQ5 27203181
    98088 5jbh:7 (5.34) BS03 MG 3.6.5.3 GO:0000049 ... Q980A5 27819266
    98089 5jbi:A (1.7) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    98090 5jbi:B (1.7) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    98091 5jbj:A (3.58) BS03 ZN 3.6.4.13 GO:0003677 ... G0YYQ5 27203181
    98092 5jbt:A (1.4) BS02 CA 3.4.21.4 GO:0004252 ... P35030 27810896
    98093 5jc1:A (1.65) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    98094 5jc1:B (1.65) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    98095 5jc3:A (2.6) BS04 ZN 3.6.4.13 GO:0003677 ... D9N195 27203181
    98096 5jc3:B (2.6) BS04 ZN 3.6.4.13 GO:0003677 ... D9N195 27203181
    98097 5jc6:A (1.4) BS01 ZN 3.4.17.2 GO:0004181 ... P09955 28274181
    98098 5jc6:A (1.4) BS02 ZN 3.4.17.2 GO:0004181 ... P09955 28274181
    98099 5jc7:A (2.75) BS03 ZN 3.6.4.13 GO:0003677 ... D9N195 27203181
    98100 5jc7:B (2.75) BS03 ZN 3.6.4.13 GO:0003677 ... D9N195 27203181
    98101 5jc8:D (1.45) BS01 MG ? N/A Q13GE3 N/A
    98102 5jc9:AB (3.03) BS02 ZN ? GO:0000028 ... P0A7V0 27382179
    98103 5jc9:C5 (3.03) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    98104 5jc9:D5 (3.03) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    98105 5jcb:A (2.3) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 28035796
    98106 5jcb:A (2.3) BS03 CA 3.6.5.- GO:0000226 ... Q2XVP4 28035796
    98107 5jcb:D (2.3) BS02 MG ? GO:0000226 ... P02554 28035796
    98108 5jcf:A (2.6) BS04 ZN 3.6.4.13 GO:0003677 ... D9N195 27203181
    98109 5jcf:B (2.6) BS04 ZN 3.6.4.13 GO:0003677 ... D9N195 27203181
    98110 5jch:A (2.95) BS03 ZN 3.6.4.13 GO:0003677 ... D9N195 27203181
    98111 5jch:B (2.95) BS03 ZN 3.6.4.13 GO:0003677 ... D9N195 27203181
    98112 5jct:A (1.73) BS01 FE 1.13.11.24 GO:0003712 ... O00625 28004573
    98113 5jcw:A (1.945) BS02 CA 2.5.1.18 GO:0000302 ... P09211 27684484
    98114 5jcw:A (1.945) BS03 CA 2.5.1.18 GO:0000302 ... P09211 27684484
    98115 5jcw:B (1.945) BS03 CA 2.5.1.18 GO:0000302 ... P09211 27684484
    98116 5jcw:B (1.945) BS04 CA 2.5.1.18 GO:0000302 ... P09211 27684484
    98117 5jcz:A (2.056) BS01 MG 3.6.5.2 GO:0003924 ... P62491 27623148
    98118 5jcz:C (2.056) BS01 MG ? N/A Q9Y4I1 27623148
    98119 5jcz:D (2.056) BS01 MG 3.6.5.2 GO:0003924 ... P62491 27623148
    98120 5jcz:I (2.056) BS01 MG 3.6.5.2 GO:0003924 ... P62491 27623148
    98121 5jd9:A (1.63) BS01 MG ? GO:0000166 ... Q739M5 27185916
    98122 5jda:A (1.401) BS02 MG 2.7.11.1 GO:0000166 ... Q739M5 27185916
    98123 5jdf:A (2.65) BS01 CA ? GO:0005262 ... Q57556 27183196
    98124 5jdf:A (2.65) BS02 CA ? GO:0005262 ... Q57556 27183196
    98125 5jdg:A (2.407) BS01 NA ? GO:0005262 ... Q57556 27183196
    98126 5jdg:A (2.407) BS02 NA ? GO:0005262 ... Q57556 27183196
    98127 5jdg:A (2.407) BS03 CA ? GO:0005262 ... Q57556 27183196
    98128 5jdh:A (2.203) BS01 NA ? GO:0005262 ... Q57556 27183196
    98129 5jdh:A (2.203) BS02 CA ? GO:0005262 ... Q57556 27183196
    98130 5jdh:A (2.203) BS03 CA ? GO:0005262 ... Q57556 27183196
    98131 5jdj:B (1.738) BS01 CA 2.7.11.1 N/A Q8WZ42 27683155
    98132 5jdj:E (1.738) BS01 CA 2.7.11.1 N/A Q8WZ42 27683155
    98133 5jdj:I (1.738) BS01 CA 2.7.11.1 N/A Q8WZ42 27683155
    98134 5jdj:L (1.738) BS01 CA 2.7.11.1 N/A Q8WZ42 27683155
    98135 5jdm:A (2.558) BS01 NA ? GO:0005262 ... Q57556 27183196
    98136 5jdm:A (2.558) BS02 NA ? GO:0005262 ... Q57556 27183196
    98137 5jdn:A (2.3) BS01 NA ? GO:0005262 ... Q57556 27183196
    98138 5jdq:A (2.5) BS01 NA ? GO:0005262 ... Q57556 27183196
    98139 5jdq:A (2.5) BS02 NA ? GO:0005262 ... Q57556 27183196
    98140 5jdq:A (2.5) BS03 NA ? GO:0005262 ... Q57556 27183196
    98141 5jdv:B (1.34) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 28252841
    98142 5je7:B (1.15) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 28252841
    98143 5jea:J (2.65) BS02 ZN 3.1.13.-
    3.1.26.-    		 GO:0000049 ... Q08162 27345150
    98144 5jee:A (1.49) BS01 CA ? GO:0003677 ... O74036 27725183
    98145 5jeg:B (1.19) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 28252841
    98146 5jeh:B (1.13) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 28252841
    98147 5jep:B (1.19) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 28252841
    98148 5jes:B (1.205) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 28252841
    98149 5jex:A (2.0) BS01 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98150 5jex:A (2.0) BS02 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98151 5jex:A (2.0) BS03 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98152 5jez:A (1.7) BS02 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98153 5jez:A (1.7) BS03 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98154 5jez:A (1.7) BS04 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98155 5jf1:A (2.0) BS02 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98156 5jf1:A (2.0) BS03 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98157 5jf1:A (2.0) BS04 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98158 5jf2:A (2.0) BS02 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98159 5jf2:A (2.0) BS03 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98160 5jf2:A (2.0) BS04 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98161 5jf3:A (1.6) BS02 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98162 5jf3:A (1.6) BS03 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98163 5jf3:A (1.6) BS04 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98164 5jf4:A (2.4) BS02 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98165 5jf4:A (2.4) BS03 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98166 5jf4:A (2.4) BS04 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98167 5jf5:A (1.8) BS02 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98168 5jf5:A (1.8) BS03 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98169 5jf5:A (1.8) BS04 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98170 5jf6:A (1.7) BS02 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98171 5jf6:A (1.7) BS03 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98172 5jf6:A (1.7) BS04 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98173 5jf7:A (2.1) BS02 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98174 5jf7:A (2.1) BS03 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98175 5jf7:A (2.1) BS04 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98176 5jf8:A (1.8) BS02 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98177 5jf8:A (1.8) BS03 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98178 5jf8:A (1.8) BS04 ZN 3.5.1.88 GO:0006412 ... Q8E378 27762275
    98179 5jfg:A (1.77) BS02 CA ? GO:0003677 ... O74036 N/A
    98180 5jfr:A (1.6) BS01 MN 3.4.11.18 GO:0006508 ... P50579 27136719
    98181 5jfr:A (1.6) BS02 MN 3.4.11.18 GO:0006508 ... P50579 27136719
    98182 5jfy:A (2.101) BS01 ZN ? GO:0003824 ... H2EMX8 N/A
    98183 5jfy:B (2.101) BS01 ZN ? GO:0003824 ... H2EMX8 N/A
    98184 5jfy:C (2.101) BS01 ZN ? GO:0003824 ... H2EMX8 N/A
    98185 5jfy:D (2.101) BS01 ZN ? GO:0003824 ... H2EMX8 N/A
    98186 5jg3:B (1.21) BS03 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 28252841
    98187 5jg5:B (1.19) BS03 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 28252841
    98188 5jg6:A (2.0013) BS01 ZN ? GO:0005680 ... Q9NYG5 27259151
    98189 5jg6:A (2.0013) BS02 ZN ? GO:0005680 ... Q9NYG5 27259151
    98190 5jg6:A (2.0013) BS03 ZN ? GO:0005680 ... Q9NYG5 27259151
    98191 5jg6:D (2.0013) BS01 ZN ? GO:0005680 ... Q9NYG5 27259151
    98192 5jg6:D (2.0013) BS02 ZN ? GO:0005680 ... Q9NYG5 27259151
    98193 5jg6:D (2.0013) BS03 ZN ? GO:0005680 ... Q9NYG5 27259151
    98194 5jg8:A (2.8) BS01 ZN 3.1.4.12
    3.1.4.3    		 GO:0001778 ... P17405 27349982
    98195 5jg8:A (2.8) BS02 ZN 3.1.4.12
    3.1.4.3    		 GO:0001778 ... P17405 27349982
    98196 5jg8:B (2.8) BS01 ZN 3.1.4.12
    3.1.4.3    		 GO:0001778 ... P17405 27349982
    98197 5jg8:B (2.8) BS02 ZN 3.1.4.12
    3.1.4.3    		 GO:0001778 ... P17405 27349982
    98198 5jgc:A (2.08) BS01 ZN ? GO:0006355 ... Q5NBT9 28630893
    98199 5jgf:A (1.83) BS01 ZN 3.4.11.22 GO:0000324 ... P14904 27320913
    98200 5jgf:A (1.83) BS02 ZN 3.4.11.22 GO:0000324 ... P14904 27320913
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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