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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    97801 5j4c:2X (2.8) BS02 MG ? GO:0000027 ... Q5SHP0 27079977
    97802 5j4c:2Y (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 27079977
    97803 5j4c:2Z (2.8) BS03 MG ? GO:0003723 ... Q5SHZ1 27079977
    97804 5j4c:2d (2.8) BS03 MG ? GO:0003723 ... P80373 27079977
    97805 5j4c:2e (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 27079977
    97806 5j4c:2f (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 27079977
    97807 5j4c:2k (2.8) BS02 MG ? GO:0003735 ... P80376 27079977
    97808 5j4c:2l (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 27079977
    97809 5j4c:2n (2.8) BS02 ZN N/A GO:0003735 ... N/A 27079977
    97810 5j4c:2q (2.8) BS02 MG N/A GO:0003735 ... N/A 27079977
    97811 5j4c:2q (2.8) BS03 MG N/A GO:0003735 ... N/A 27079977
    97812 5j4c:2t (2.8) BS02 MG ? GO:0003723 ... P80380 27079977
    97813 5j4d:AC (3.1) BS02 ZN ? GO:0003723 ... Q72I15 27107638
    97814 5j4d:BB (3.1) BS02 MG ? GO:0000028 ... P62660 27107638
    97815 5j4d:BC (3.1) BS03 MG ? GO:0003723 ... Q72IA7 27107638
    97816 5j4d:BC (3.1) BS04 MG ? GO:0003723 ... Q72IA7 27107638
    97817 5j4d:BC (3.1) BS05 MG ? GO:0003723 ... Q72IA7 27107638
    97818 5j4d:CA (3.1) BS02 ZN ? GO:0003735 ... P62652 27107638
    97819 5j4d:CD (3.1) BS03 MG ? GO:0003735 ... P62657 27107638
    97820 5j4d:DA (3.1) BS02 ZN ? GO:0003735 ... Q72GW3 27107638
    97821 5j4d:DA (3.1) BS03 MG ? GO:0003735 ... Q72GW3 27107638
    97822 5j4d:DC (3.1) BS03 MG ? GO:0003735 ... Q72G84 27107638
    97823 5j4d:E (3.1) BS02 MG ? GO:0002181 ... Q72I07 27107638
    97824 5j4d:E (3.1) BS03 MG ? GO:0002181 ... Q72I07 27107638
    97825 5j4d:E (3.1) BS04 MG ? GO:0002181 ... Q72I07 27107638
    97826 5j4d:E (3.1) BS05 MG ? GO:0002181 ... Q72I07 27107638
    97827 5j4d:EC (3.1) BS02 MG ? GO:0003735 ... Q72I12 27107638
    97828 5j4d:ED (3.1) BS02 MG ? GO:0003735 ... P62658 27107638
    97829 5j4d:F (3.1) BS02 MG ? GO:0003735 ... Q72I04 27107638
    97830 5j4d:F (3.1) BS03 MG ? GO:0003735 ... Q72I04 27107638
    97831 5j4d:F (3.1) BS04 MG ? GO:0003735 ... Q72I04 27107638
    97832 5j4d:F (3.1) BS05 MG ? GO:0003735 ... Q72I04 27107638
    97833 5j4d:F (3.1) BS06 MG ? GO:0003735 ... Q72I04 27107638
    97834 5j4d:F (3.1) BS07 MG ? GO:0003735 ... Q72I04 27107638
    97835 5j4d:F (3.1) BS08 MG ? GO:0003735 ... Q72I04 27107638
    97836 5j4d:FA (3.1) BS02 MG ? GO:0003735 ... Q72L77 27107638
    97837 5j4d:FA (3.1) BS03 MG ? GO:0003735 ... Q72L77 27107638
    97838 5j4d:FA (3.1) BS04 MG ? GO:0003735 ... Q72L77 27107638
    97839 5j4d:FA (3.1) BS05 MG ? GO:0003735 ... Q72L77 27107638
    97840 5j4d:G (3.1) BS02 MG ? GO:0003735 ... Q72I05 27107638
    97841 5j4d:G (3.1) BS03 MG ? GO:0003735 ... Q72I05 27107638
    97842 5j4d:G (3.1) BS04 MG ? GO:0003735 ... Q72I05 27107638
    97843 5j4d:G (3.1) BS05 MG ? GO:0003735 ... Q72I05 27107638
    97844 5j4d:GA (3.1) BS02 ZN ? GO:0003735 ... Q72I28 27107638
    97845 5j4d:H (3.1) BS04 MG ? GO:0000049 ... Q72I16 27107638
    97846 5j4d:H (3.1) BS05 MG ? GO:0000049 ... Q72I16 27107638
    97847 5j4d:HC (3.1) BS02 ZN ? GO:0003735 ... P62652 27107638
    97848 5j4d:HD (3.1) BS02 MG ? GO:0003723 ... P62661 27107638
    97849 5j4d:I (3.1) BS02 MG ? GO:0002181 ... Q72I19 27107638
    97850 5j4d:I (3.1) BS03 MG ? GO:0002181 ... Q72I19 27107638
    97851 5j4d:IC (3.1) BS02 ZN ? GO:0003735 ... Q72GW3 27107638
    97852 5j4d:J (3.1) BS02 MG ? GO:0003735 ... Q72GV5 27107638
    97853 5j4d:JA (3.1) BS05 MG ? GO:0003747 ... P0A7I0 27107638
    97854 5j4d:JA (3.1) BS06 MG ? GO:0003747 ... P0A7I0 27107638
    97855 5j4d:JB (3.1) BS03 MG ? GO:0002181 ... Q72I07 27107638
    97856 5j4d:JB (3.1) BS04 MG ? GO:0002181 ... Q72I07 27107638
    97857 5j4d:JB (3.1) BS05 MG ? GO:0002181 ... Q72I07 27107638
    97858 5j4d:JB (3.1) BS06 MG ? GO:0002181 ... Q72I07 27107638
    97859 5j4d:JB (3.1) BS07 MG ? GO:0002181 ... Q72I07 27107638
    97860 5j4d:K (3.1) BS02 MG ? GO:0003729 ... Q72IN1 27107638
    97861 5j4d:K (3.1) BS03 MG ? GO:0003729 ... Q72IN1 27107638
    97862 5j4d:K (3.1) BS04 MG ? GO:0003729 ... Q72IN1 27107638
    97863 5j4d:KB (3.1) BS02 MG ? GO:0003735 ... Q72I04 27107638
    97864 5j4d:KB (3.1) BS03 MG ? GO:0003735 ... Q72I04 27107638
    97865 5j4d:KB (3.1) BS04 MG ? GO:0003735 ... Q72I04 27107638
    97866 5j4d:KC (3.1) BS02 MG ? GO:0003735 ... Q72L77 27107638
    97867 5j4d:KC (3.1) BS03 MG ? GO:0003735 ... Q72L77 27107638
    97868 5j4d:L (3.1) BS03 MG ? GO:0003735 ... Q72I14 27107638
    97869 5j4d:L (3.1) BS04 MG ? GO:0003735 ... Q72I14 27107638
    97870 5j4d:L (3.1) BS05 MG ? GO:0003735 ... Q72I14 27107638
    97871 5j4d:LA (3.1) BS02 MG ? GO:0003676 ... P62663 27107638
    97872 5j4d:LB (3.1) BS02 MG ? GO:0003735 ... Q72I05 27107638
    97873 5j4d:LB (3.1) BS03 MG ? GO:0003735 ... Q72I05 27107638
    97874 5j4d:LB (3.1) BS04 MG ? GO:0003735 ... Q72I05 27107638
    97875 5j4d:LC (3.1) BS02 ZN ? GO:0003735 ... Q72I28 27107638
    97876 5j4d:M (3.1) BS03 MG ? GO:0003735 ... Q72I23 27107638
    97877 5j4d:M (3.1) BS04 MG ? GO:0003735 ... Q72I23 27107638
    97878 5j4d:M (3.1) BS05 MG ? GO:0003735 ... Q72I23 27107638
    97879 5j4d:M (3.1) BS06 MG ? GO:0003735 ... Q72I23 27107638
    97880 5j4d:M (3.1) BS07 MG ? GO:0003735 ... Q72I23 27107638
    97881 5j4d:MA (3.1) BS02 MG ? GO:0003723 ... P62664 27107638
    97882 5j4d:MA (3.1) BS03 MG ? GO:0003723 ... P62664 27107638
    97883 5j4d:MB (3.1) BS04 MG ? GO:0000049 ... Q72I16 27107638
    97884 5j4d:N (3.1) BS02 MG ? GO:0000049 ... Q72I11 27107638
    97885 5j4d:N (3.1) BS03 MG ? GO:0000049 ... Q72I11 27107638
    97886 5j4d:O (3.1) BS02 MG ? GO:0003735 ... Q72I33 27107638
    97887 5j4d:O (3.1) BS03 MG ? GO:0003735 ... Q72I33 27107638
    97888 5j4d:OA (3.1) BS02 MG ? GO:0003735 ... P62666 27107638
    97889 5j4d:OC (3.1) BS05 MG ? GO:0003747 ... P0A7I0 27107638
    97890 5j4d:PB (3.1) BS02 MG ? GO:0003729 ... Q72IN1 27107638
    97891 5j4d:PB (3.1) BS03 MG ? GO:0003729 ... Q72IN1 27107638
    97892 5j4d:Q (3.1) BS03 MG ? GO:0003735 ... Q72JU9 27107638
    97893 5j4d:QA (3.1) BS02 MG ? GO:0003735 ... P62668 27107638
    97894 5j4d:QB (3.1) BS03 MG ? GO:0003735 ... Q72I14 27107638
    97895 5j4d:QB (3.1) BS04 MG ? GO:0003735 ... Q72I14 27107638
    97896 5j4d:QB (3.1) BS05 MG ? GO:0003735 ... Q72I14 27107638
    97897 5j4d:QC (3.1) BS02 MG ? GO:0003676 ... P62663 27107638
    97898 5j4d:R (3.1) BS02 MG ? GO:0000027 ... Q72L76 27107638
    97899 5j4d:RB (3.1) BS02 MG ? GO:0003735 ... Q72I23 27107638
    97900 5j4d:RB (3.1) BS03 MG ? GO:0003735 ... Q72I23 27107638
    97901 5j4d:RB (3.1) BS04 MG ? GO:0003735 ... Q72I23 27107638
    97902 5j4d:RC (3.1) BS02 MG ? GO:0003723 ... P62664 27107638
    97903 5j4d:RC (3.1) BS03 MG ? GO:0003723 ... P62664 27107638
    97904 5j4d:RC (3.1) BS04 MG ? GO:0003723 ... P62664 27107638
    97905 5j4d:RC (3.1) BS05 MG ? GO:0003723 ... P62664 27107638
    97906 5j4d:S (3.1) BS02 MG ? GO:0003723 ... Q72HR2 27107638
    97907 5j4d:SA (3.1) BS02 MG ? GO:0000049 ... P62653 27107638
    97908 5j4d:SA (3.1) BS03 MG ? GO:0000049 ... P62653 27107638
    97909 5j4d:SB (3.1) BS02 MG ? GO:0000049 ... Q72I11 27107638
    97910 5j4d:SC (3.1) BS02 MG ? GO:0003723 ... P62665 27107638
    97911 5j4d:T (3.1) BS02 MG ? GO:0003735 ... Q72I09 27107638
    97912 5j4d:TB (3.1) BS02 MG ? GO:0003735 ... Q72I33 27107638
    97913 5j4d:UA (3.1) BS02 MG ? GO:0000049 ... P61941 27107638
    97914 5j4d:UC (3.1) BS03 MG ? GO:0000028 ... P62667 27107638
    97915 5j4d:V (3.1) BS02 ZN ? GO:0003723 ... Q72I15 27107638
    97916 5j4d:VB (3.1) BS03 MG ? GO:0003735 ... Q72JU9 27107638
    97917 5j4d:W (3.1) BS03 MG ? GO:0003723 ... Q72IA7 27107638
    97918 5j4d:WC (3.1) BS03 MG ? GO:0000049 ... P62669 27107638
    97919 5j4d:WC (3.1) BS04 MG ? GO:0000049 ... P62669 27107638
    97920 5j4d:X (3.1) BS04 MG ? GO:0003735 ... P60493 27107638
    97921 5j4d:X (3.1) BS05 MG ? GO:0003735 ... P60493 27107638
    97922 5j4d:X (3.1) BS06 MG ? GO:0003735 ... P60493 27107638
    97923 5j4d:XB (3.1) BS02 MG ? GO:0003723 ... Q72HR2 27107638
    97924 5j4d:XC (3.1) BS02 MG ? GO:0000049 ... P62653 27107638
    97925 5j4d:Y (3.1) BS03 MG ? GO:0003735 ... Q72G84 27107638
    97926 5j4d:YB (3.1) BS02 MG ? GO:0003735 ... Q72I09 27107638
    97927 5j4d:YB (3.1) BS03 MG ? GO:0003735 ... Q72I09 27107638
    97928 5j4d:YC (3.1) BS02 MG ? GO:0003735 ... P62654 27107638
    97929 5j4d:ZB (3.1) BS02 MG ? GO:0000027 ... Q72I06 27107638
    97930 5j4h:A (1.374) BS02 CA ? GO:0003677 ... O74036 27725183
    97931 5j4k:A (1.346) BS01 CA ? GO:0003677 ... O74036 27725183
    97932 5j4v:A (2.94) BS01 ZN 3.6.4.- GO:0003677 ... P03072 27385654
    97933 5j4y:A (2.59) BS01 ZN 3.6.4.- GO:0003677 ... P03072 27385654
    97934 5j53:A (1.61) BS01 FE 1.13.11.- GO:0010436 ... Q2GA76 27911781
    97935 5j54:A (1.89) BS01 FE 1.13.11.- GO:0010436 ... Q2GA76 27911781
    97936 5j55:A (1.75) BS01 FE 1.13.11.- GO:0010436 ... Q2GA76 27911781
    97937 5j5b:AB (2.8) BS02 ZN ? GO:0000028 ... P0A7V0 27382179
    97938 5j5b:C5 (2.8) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    97939 5j5b:D5 (2.8) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    97940 5j5c:A (3.4) BS01 MG ? GO:0000139 ... P40616 27436755
    97941 5j5j:A (3.29) BS04 CA ? GO:0005509 ... Q02487
    Q14126    		 27298358
    97942 5j5j:A (3.29) BS05 CA ? GO:0005509 ... Q02487
    Q14126    		 27298358
    97943 5j5j:A (3.29) BS06 CA ? GO:0005509 ... Q02487
    Q14126    		 27298358
    97944 5j5j:A (3.29) BS07 CA ? GO:0005509 ... Q02487
    Q14126    		 27298358
    97945 5j5j:A (3.29) BS08 CA ? GO:0005509 ... Q02487
    Q14126    		 27298358
    97946 5j5j:A (3.29) BS09 CA ? GO:0005509 ... Q02487
    Q14126    		 27298358
    97947 5j5j:A (3.29) BS10 CA ? GO:0005509 ... Q02487
    Q14126    		 27298358
    97948 5j5j:A (3.29) BS11 CA ? GO:0005509 ... Q02487
    Q14126    		 27298358
    97949 5j5j:A (3.29) BS12 CA ? GO:0005509 ... Q02487
    Q14126    		 27298358
    97950 5j5j:A (3.29) BS13 CA ? GO:0005509 ... Q02487
    Q14126    		 27298358
    97951 5j5j:A (3.29) BS14 CA ? GO:0005509 ... Q02487
    Q14126    		 27298358
    97952 5j6d:A (1.9) BS01 FE 1.14.16.4 GO:0004497 ... P17752 27146606
    97953 5j6d:B (1.9) BS02 FE 1.14.16.4 GO:0004497 ... P17752 27146606
    97954 5j6f:A (2.75) BS01 MN 2.5.1.54
    5.4.99.5    		 GO:0003849 ... L8A208 27502275
    97955 5j6f:B (2.75) BS01 MN 2.5.1.54
    5.4.99.5    		 GO:0003849 ... L8A208 27502275
    97956 5j6p:A (2.6) BS01 ZN ? N/A Q9P802 N/A
    97957 5j6p:B (2.6) BS01 ZN ? N/A Q9P802 N/A
    97958 5j6p:C (2.6) BS01 ZN ? N/A Q9P802 N/A
    97959 5j6s:A (2.8) BS01 ZN 3.4.11.- GO:0002250 ... Q6P179 28337326
    97960 5j6s:B (2.8) BS01 ZN 3.4.11.- GO:0002250 ... Q6P179 28337326
    97961 5j6y:A (1.03) BS01 CA ? N/A A1YIY3 28808685
    97962 5j6y:A (1.03) BS02 CA ? N/A A1YIY3 28808685
    97963 5j6y:A (1.03) BS03 CA ? N/A A1YIY3 28808685
    97964 5j6y:A (1.03) BS04 CA ? N/A A1YIY3 28808685
    97965 5j6y:A (1.03) BS05 CA ? N/A A1YIY3 28808685
    97966 5j6y:A (1.03) BS06 CA ? N/A A1YIY3 28808685
    97967 5j72:A (1.7) BS01 CA 3.5.1.28 GO:0008745 ... Q183L9 28132783
    97968 5j72:A (1.7) BS02 ZN 3.5.1.28 GO:0008745 ... Q183L9 28132783
    97969 5j72:B (1.7) BS01 CA 3.5.1.28 GO:0008745 ... Q183L9 28132783
    97970 5j72:B (1.7) BS02 CA 3.5.1.28 GO:0008745 ... Q183L9 28132783
    97971 5j72:B (1.7) BS03 ZN 3.5.1.28 GO:0008745 ... Q183L9 28132783
    97972 5j7j:A (-1.00) BS02 CA ? GO:0005102 ... P0DP33 29118000
    97973 5j7j:A (-1.00) BS03 CA ? GO:0005102 ... P0DP33 29118000
    97974 5j7j:A (-1.00) BS04 CA ? GO:0005102 ... P0DP33 29118000
    97975 5j7j:A (-1.00) BS05 CA ? GO:0005102 ... P0DP33 29118000
    97976 5j7l:AB (3.0) BS02 ZN ? GO:0000028 ... P0A7V0 27382179
    97977 5j7l:C5 (3.0) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    97978 5j7l:D5 (3.0) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    97979 5j84:A (2.4) BS01 MG 4.2.1.25
    4.2.1.6
    4.2.1.67    		 GO:0008869 ... B5ZZ34 28574691
    97980 5j84:B (2.4) BS01 MG 4.2.1.25
    4.2.1.6
    4.2.1.67    		 GO:0008869 ... B5ZZ34 28574691
    97981 5j84:C (2.4) BS01 MG 4.2.1.25
    4.2.1.6
    4.2.1.67    		 GO:0008869 ... B5ZZ34 28574691
    97982 5j84:D (2.4) BS01 MG 4.2.1.25
    4.2.1.6
    4.2.1.67    		 GO:0008869 ... B5ZZ34 28574691
    97983 5j84:E (2.4) BS01 MG 4.2.1.25
    4.2.1.6
    4.2.1.67    		 GO:0008869 ... B5ZZ34 28574691
    97984 5j84:F (2.4) BS01 MG 4.2.1.25
    4.2.1.6
    4.2.1.67    		 GO:0008869 ... B5ZZ34 28574691
    97985 5j84:G (2.4) BS01 MG 4.2.1.25
    4.2.1.6
    4.2.1.67    		 GO:0008869 ... B5ZZ34 28574691
    97986 5j84:H (2.4) BS01 MG 4.2.1.25
    4.2.1.6
    4.2.1.67    		 GO:0008869 ... B5ZZ34 28574691
    97987 5j85:A (2.6) BS02 MG ? GO:0016829 ... I9XDU6 28574691
    97988 5j88:AB (3.32) BS02 ZN ? GO:0000028 ... P0A7V0 27382179
    97989 5j88:C5 (3.32) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    97990 5j88:D5 (3.32) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    97991 5j8a:AB (3.1) BS02 ZN ? GO:0000028 ... P0A7V0 27382179
    97992 5j8a:C5 (3.1) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    97993 5j8a:D5 (3.1) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    97994 5j8b:0 (2.6) BS03 MG ? GO:0003735 ... P60493 27092003
    97995 5j8b:1 (2.6) BS03 MG ? GO:0003735 ... P60494 27092003
    97996 5j8b:4 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 27092003
    97997 5j8b:5 (2.6) BS02 ZN ? GO:0003735 ... P80339 27092003
    97998 5j8b:6 (2.6) BS03 MG ? GO:0000049 ... P35871 27092003
    97999 5j8b:6 (2.6) BS04 ZN ? GO:0000049 ... P35871 27092003
    98000 5j8b:7 (2.6) BS02 MG ? GO:0003735 ... P80340 27092003
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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