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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    97601 5j4b:1Q (2.6) BS06 MG ? GO:0000049 ... P60489 27079977
    97602 5j4b:1Q (2.6) BS07 MG ? GO:0000049 ... P60489 27079977
    97603 5j4b:1R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 27079977
    97604 5j4b:1R (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 27079977
    97605 5j4b:1R (2.6) BS04 MG ? GO:0003735 ... Q9Z9H5 27079977
    97606 5j4b:1S (2.6) BS03 MG ? GO:0003735 ... Q5SHQ4 27079977
    97607 5j4b:1S (2.6) BS04 MG ? GO:0003735 ... Q5SHQ4 27079977
    97608 5j4b:1U (2.6) BS02 MG ? GO:0000027 ... P60491 27079977
    97609 5j4b:1U (2.6) BS03 MG ? GO:0000027 ... P60491 27079977
    97610 5j4b:1U (2.6) BS04 MG ? GO:0000027 ... P60491 27079977
    97611 5j4b:1U (2.6) BS05 MG ? GO:0000027 ... P60491 27079977
    97612 5j4b:1U (2.6) BS06 MG ? GO:0000027 ... P60491 27079977
    97613 5j4b:1U (2.6) BS07 MG ? GO:0000027 ... P60491 27079977
    97614 5j4b:1U (2.6) BS08 MG ? GO:0000027 ... P60491 27079977
    97615 5j4b:1U (2.6) BS09 MG ? GO:0000027 ... P60491 27079977
    97616 5j4b:1V (2.6) BS02 MG ? GO:0003723 ... P60492 27079977
    97617 5j4b:1V (2.6) BS03 MG ? GO:0003723 ... P60492 27079977
    97618 5j4b:1V (2.6) BS04 MG ? GO:0003723 ... P60492 27079977
    97619 5j4b:1V (2.6) BS05 MG ? GO:0003723 ... P60492 27079977
    97620 5j4b:1V (2.6) BS06 MG ? GO:0003723 ... P60492 27079977
    97621 5j4b:1W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 27079977
    97622 5j4b:1W (2.6) BS03 MG ? GO:0003735 ... Q5SHP3 27079977
    97623 5j4b:1W (2.6) BS04 MG ? GO:0003735 ... Q5SHP3 27079977
    97624 5j4b:1W (2.6) BS05 MG ? GO:0003735 ... Q5SHP3 27079977
    97625 5j4b:1W (2.6) BS06 MG ? GO:0003735 ... Q5SHP3 27079977
    97626 5j4b:1X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 27079977
    97627 5j4b:1X (2.6) BS03 MG ? GO:0000027 ... Q5SHP0 27079977
    97628 5j4b:1X (2.6) BS04 MG ? GO:0000027 ... Q5SHP0 27079977
    97629 5j4b:1X (2.6) BS05 MG ? GO:0000027 ... Q5SHP0 27079977
    97630 5j4b:1X (2.6) BS06 MG ? GO:0000027 ... Q5SHP0 27079977
    97631 5j4b:1Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 27079977
    97632 5j4b:1Y (2.6) BS03 MG ? GO:0003723 ... Q5SHP9 27079977
    97633 5j4b:1Z (2.6) BS03 MG ? GO:0003723 ... Q5SHZ1 27079977
    97634 5j4b:1b (2.6) BS02 MG ? GO:0003735 ... P80371 27079977
    97635 5j4b:1e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 27079977
    97636 5j4b:1e (2.6) BS03 MG ? GO:0003723 ... Q5SHQ5 27079977
    97637 5j4b:1f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 27079977
    97638 5j4b:1k (2.6) BS02 MG ? GO:0003735 ... P80376 27079977
    97639 5j4b:1l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 27079977
    97640 5j4b:1m (2.6) BS03 MG ? GO:0000049 ... P80377 27079977
    97641 5j4b:1n (2.6) BS02 ZN N/A GO:0003735 ... N/A 27079977
    97642 5j4b:1t (2.6) BS02 MG ? GO:0003723 ... P80380 27079977
    97643 5j4b:21 (2.6) BS03 MG ? GO:0003735 ... P60494 27079977
    97644 5j4b:23 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 27079977
    97645 5j4b:23 (2.6) BS04 MG ? GO:0003735 ... Q5SHQ6 27079977
    97646 5j4b:24 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 27079977
    97647 5j4b:25 (2.6) BS02 ZN ? GO:0003735 ... P80339 27079977
    97648 5j4b:26 (2.6) BS02 ZN ? GO:0000049 ... P35871 27079977
    97649 5j4b:29 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 27079977
    97650 5j4b:2D (2.6) BS03 MG ? GO:0002181 ... P60405 27079977
    97651 5j4b:2D (2.6) BS04 MG ? GO:0002181 ... P60405 27079977
    97652 5j4b:2D (2.6) BS05 MG ? GO:0002181 ... P60405 27079977
    97653 5j4b:2D (2.6) BS06 MG ? GO:0002181 ... P60405 27079977
    97654 5j4b:2D (2.6) BS07 MG ? GO:0002181 ... P60405 27079977
    97655 5j4b:2F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 27079977
    97656 5j4b:2F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 27079977
    97657 5j4b:2F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 27079977
    97658 5j4b:2F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 27079977
    97659 5j4b:2Q (2.6) BS03 MG ? GO:0000049 ... P60489 27079977
    97660 5j4b:2Q (2.6) BS04 MG ? GO:0000049 ... P60489 27079977
    97661 5j4b:2Q (2.6) BS05 MG ? GO:0000049 ... P60489 27079977
    97662 5j4b:2U (2.6) BS02 MG ? GO:0000027 ... P60491 27079977
    97663 5j4b:2U (2.6) BS03 MG ? GO:0000027 ... P60491 27079977
    97664 5j4b:2U (2.6) BS04 MG ? GO:0000027 ... P60491 27079977
    97665 5j4b:2V (2.6) BS02 MG ? GO:0003723 ... P60492 27079977
    97666 5j4b:2V (2.6) BS03 MG ? GO:0003723 ... P60492 27079977
    97667 5j4b:2W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 27079977
    97668 5j4b:2W (2.6) BS03 MG ? GO:0003735 ... Q5SHP3 27079977
    97669 5j4b:2X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 27079977
    97670 5j4b:2Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 27079977
    97671 5j4b:2Z (2.6) BS03 MG ? GO:0003723 ... Q5SHZ1 27079977
    97672 5j4b:2d (2.6) BS03 MG ? GO:0003723 ... P80373 27079977
    97673 5j4b:2e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 27079977
    97674 5j4b:2f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 27079977
    97675 5j4b:2k (2.6) BS02 MG ? GO:0003735 ... P80376 27079977
    97676 5j4b:2l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 27079977
    97677 5j4b:2n (2.6) BS02 ZN N/A GO:0003735 ... N/A 27079977
    97678 5j4b:2q (2.6) BS02 MG N/A GO:0003735 ... N/A 27079977
    97679 5j4b:2q (2.6) BS03 MG N/A GO:0003735 ... N/A 27079977
    97680 5j4b:2t (2.6) BS02 MG ? GO:0003723 ... P80380 27079977
    97681 5j4c:10 (2.8) BS03 MG ? GO:0003735 ... P60493 27079977
    97682 5j4c:10 (2.8) BS04 MG ? GO:0003735 ... P60493 27079977
    97683 5j4c:11 (2.8) BS03 MG ? GO:0003735 ... P60494 27079977
    97684 5j4c:12 (2.8) BS02 MG ? GO:0003735 ... Q5SHP6 27079977
    97685 5j4c:13 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 27079977
    97686 5j4c:13 (2.8) BS04 MG ? GO:0003735 ... Q5SHQ6 27079977
    97687 5j4c:14 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 27079977
    97688 5j4c:15 (2.8) BS02 MG ? GO:0003735 ... P80339 27079977
    97689 5j4c:15 (2.8) BS03 ZN ? GO:0003735 ... P80339 27079977
    97690 5j4c:16 (2.8) BS02 MG ? GO:0000049 ... P35871 27079977
    97691 5j4c:16 (2.8) BS03 ZN ? GO:0000049 ... P35871 27079977
    97692 5j4c:16 (2.8) BS04 MG ? GO:0000049 ... P35871 27079977
    97693 5j4c:17 (2.8) BS02 MG ? GO:0003735 ... P80340 27079977
    97694 5j4c:17 (2.8) BS03 MG ? GO:0003735 ... P80340 27079977
    97695 5j4c:18 (2.8) BS02 MG ? GO:0003735 ... Q5SKU1 27079977
    97696 5j4c:19 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 27079977
    97697 5j4c:1D (2.8) BS03 MG ? GO:0002181 ... P60405 27079977
    97698 5j4c:1D (2.8) BS04 MG ? GO:0002181 ... P60405 27079977
    97699 5j4c:1D (2.8) BS05 MG ? GO:0002181 ... P60405 27079977
    97700 5j4c:1D (2.8) BS06 MG ? GO:0002181 ... P60405 27079977
    97701 5j4c:1D (2.8) BS07 MG ? GO:0002181 ... P60405 27079977
    97702 5j4c:1D (2.8) BS08 MG ? GO:0002181 ... P60405 27079977
    97703 5j4c:1D (2.8) BS09 MG ? GO:0002181 ... P60405 27079977
    97704 5j4c:1D (2.8) BS10 MG ? GO:0002181 ... P60405 27079977
    97705 5j4c:1D (2.8) BS11 MG ? GO:0002181 ... P60405 27079977
    97706 5j4c:1D (2.8) BS12 MG ? GO:0002181 ... P60405 27079977
    97707 5j4c:1D (2.8) BS13 MG ? GO:0002181 ... P60405 27079977
    97708 5j4c:1E (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 27079977
    97709 5j4c:1E (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 27079977
    97710 5j4c:1E (2.8) BS04 MG ? GO:0003735 ... Q5SHN8 27079977
    97711 5j4c:1E (2.8) BS05 MG ? GO:0003735 ... Q5SHN8 27079977
    97712 5j4c:1F (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 27079977
    97713 5j4c:1F (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 27079977
    97714 5j4c:1F (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 27079977
    97715 5j4c:1F (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 27079977
    97716 5j4c:1F (2.8) BS06 MG ? GO:0003735 ... Q5SHN9 27079977
    97717 5j4c:1F (2.8) BS07 MG ? GO:0003735 ... Q5SHN9 27079977
    97718 5j4c:1F (2.8) BS08 MG ? GO:0003735 ... Q5SHN9 27079977
    97719 5j4c:1F (2.8) BS09 MG ? GO:0003735 ... Q5SHN9 27079977
    97720 5j4c:1G (2.8) BS04 MG ? GO:0000049 ... Q5SHQ0 27079977
    97721 5j4c:1N (2.8) BS02 MG ? GO:0003729 ... P60488 27079977
    97722 5j4c:1N (2.8) BS03 MG ? GO:0003729 ... P60488 27079977
    97723 5j4c:1N (2.8) BS04 MG ? GO:0003729 ... P60488 27079977
    97724 5j4c:1O (2.8) BS03 MG ? GO:0003735 ... Q5SHP8 27079977
    97725 5j4c:1O (2.8) BS04 MG ? GO:0003735 ... Q5SHP8 27079977
    97726 5j4c:1P (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 27079977
    97727 5j4c:1P (2.8) BS03 MG ? GO:0003735 ... Q5SHQ7 27079977
    97728 5j4c:1P (2.8) BS04 MG ? GO:0003735 ... Q5SHQ7 27079977
    97729 5j4c:1P (2.8) BS05 MG ? GO:0003735 ... Q5SHQ7 27079977
    97730 5j4c:1P (2.8) BS06 MG ? GO:0003735 ... Q5SHQ7 27079977
    97731 5j4c:1Q (2.8) BS04 MG ? GO:0000049 ... P60489 27079977
    97732 5j4c:1Q (2.8) BS05 MG ? GO:0000049 ... P60489 27079977
    97733 5j4c:1Q (2.8) BS06 MG ? GO:0000049 ... P60489 27079977
    97734 5j4c:1Q (2.8) BS07 MG ? GO:0000049 ... P60489 27079977
    97735 5j4c:1Q (2.8) BS08 MG ? GO:0000049 ... P60489 27079977
    97736 5j4c:1R (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 27079977
    97737 5j4c:1R (2.8) BS03 MG ? GO:0003735 ... Q9Z9H5 27079977
    97738 5j4c:1R (2.8) BS04 MG ? GO:0003735 ... Q9Z9H5 27079977
    97739 5j4c:1S (2.8) BS03 MG ? GO:0003735 ... Q5SHQ4 27079977
    97740 5j4c:1S (2.8) BS04 MG ? GO:0003735 ... Q5SHQ4 27079977
    97741 5j4c:1U (2.8) BS02 MG ? GO:0000027 ... P60491 27079977
    97742 5j4c:1U (2.8) BS03 MG ? GO:0000027 ... P60491 27079977
    97743 5j4c:1U (2.8) BS04 MG ? GO:0000027 ... P60491 27079977
    97744 5j4c:1U (2.8) BS05 MG ? GO:0000027 ... P60491 27079977
    97745 5j4c:1U (2.8) BS06 MG ? GO:0000027 ... P60491 27079977
    97746 5j4c:1U (2.8) BS07 MG ? GO:0000027 ... P60491 27079977
    97747 5j4c:1U (2.8) BS08 MG ? GO:0000027 ... P60491 27079977
    97748 5j4c:1U (2.8) BS09 MG ? GO:0000027 ... P60491 27079977
    97749 5j4c:1V (2.8) BS02 MG ? GO:0003723 ... P60492 27079977
    97750 5j4c:1V (2.8) BS03 MG ? GO:0003723 ... P60492 27079977
    97751 5j4c:1V (2.8) BS04 MG ? GO:0003723 ... P60492 27079977
    97752 5j4c:1V (2.8) BS05 MG ? GO:0003723 ... P60492 27079977
    97753 5j4c:1V (2.8) BS06 MG ? GO:0003723 ... P60492 27079977
    97754 5j4c:1W (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 27079977
    97755 5j4c:1W (2.8) BS03 MG ? GO:0003735 ... Q5SHP3 27079977
    97756 5j4c:1W (2.8) BS04 MG ? GO:0003735 ... Q5SHP3 27079977
    97757 5j4c:1W (2.8) BS05 MG ? GO:0003735 ... Q5SHP3 27079977
    97758 5j4c:1X (2.8) BS02 MG ? GO:0000027 ... Q5SHP0 27079977
    97759 5j4c:1X (2.8) BS03 MG ? GO:0000027 ... Q5SHP0 27079977
    97760 5j4c:1X (2.8) BS04 MG ? GO:0000027 ... Q5SHP0 27079977
    97761 5j4c:1X (2.8) BS05 MG ? GO:0000027 ... Q5SHP0 27079977
    97762 5j4c:1Y (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 27079977
    97763 5j4c:1Y (2.8) BS03 MG ? GO:0003723 ... Q5SHP9 27079977
    97764 5j4c:1b (2.8) BS02 MG ? GO:0003735 ... P80371 27079977
    97765 5j4c:1e (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 27079977
    97766 5j4c:1e (2.8) BS03 MG ? GO:0003723 ... Q5SHQ5 27079977
    97767 5j4c:1k (2.8) BS02 MG ? GO:0003735 ... P80376 27079977
    97768 5j4c:1l (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 27079977
    97769 5j4c:1m (2.8) BS03 MG ? GO:0000049 ... P80377 27079977
    97770 5j4c:1n (2.8) BS02 ZN N/A GO:0003735 ... N/A 27079977
    97771 5j4c:1n (2.8) BS03 MG N/A GO:0003735 ... N/A 27079977
    97772 5j4c:1t (2.8) BS02 MG ? GO:0003723 ... P80380 27079977
    97773 5j4c:21 (2.8) BS03 MG ? GO:0003735 ... P60494 27079977
    97774 5j4c:23 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 27079977
    97775 5j4c:23 (2.8) BS04 MG ? GO:0003735 ... Q5SHQ6 27079977
    97776 5j4c:24 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 27079977
    97777 5j4c:25 (2.8) BS02 MG ? GO:0003735 ... P80339 27079977
    97778 5j4c:25 (2.8) BS03 ZN ? GO:0003735 ... P80339 27079977
    97779 5j4c:26 (2.8) BS02 ZN ? GO:0000049 ... P35871 27079977
    97780 5j4c:29 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 27079977
    97781 5j4c:2D (2.8) BS03 MG ? GO:0002181 ... P60405 27079977
    97782 5j4c:2D (2.8) BS04 MG ? GO:0002181 ... P60405 27079977
    97783 5j4c:2D (2.8) BS05 MG ? GO:0002181 ... P60405 27079977
    97784 5j4c:2D (2.8) BS06 MG ? GO:0002181 ... P60405 27079977
    97785 5j4c:2D (2.8) BS07 MG ? GO:0002181 ... P60405 27079977
    97786 5j4c:2D (2.8) BS08 MG ? GO:0002181 ... P60405 27079977
    97787 5j4c:2F (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 27079977
    97788 5j4c:2F (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 27079977
    97789 5j4c:2F (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 27079977
    97790 5j4c:2F (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 27079977
    97791 5j4c:2Q (2.8) BS04 MG ? GO:0000049 ... P60489 27079977
    97792 5j4c:2Q (2.8) BS05 MG ? GO:0000049 ... P60489 27079977
    97793 5j4c:2U (2.8) BS02 MG ? GO:0000027 ... P60491 27079977
    97794 5j4c:2U (2.8) BS03 MG ? GO:0000027 ... P60491 27079977
    97795 5j4c:2U (2.8) BS04 MG ? GO:0000027 ... P60491 27079977
    97796 5j4c:2V (2.8) BS02 MG ? GO:0003723 ... P60492 27079977
    97797 5j4c:2V (2.8) BS03 MG ? GO:0003723 ... P60492 27079977
    97798 5j4c:2V (2.8) BS04 MG ? GO:0003723 ... P60492 27079977
    97799 5j4c:2W (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 27079977
    97800 5j4c:2W (2.8) BS03 MG ? GO:0003735 ... Q5SHP3 27079977
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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