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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    97401 5j30:YR (3.2) BS02 MG ? GO:0003735 ... Q9Z9H5 27681416
    97402 5j30:YU (3.2) BS02 MG ? GO:0000027 ... P60491 27681416
    97403 5j30:YV (3.2) BS02 MG ? GO:0003723 ... P60492 27681416
    97404 5j30:YV (3.2) BS03 MG ? GO:0003723 ... P60492 27681416
    97405 5j30:YW (3.2) BS02 MG ? GO:0003735 ... Q5SHP3 27681416
    97406 5j30:YW (3.2) BS03 MG ? GO:0003735 ... Q5SHP3 27681416
    97407 5j30:YY (3.2) BS02 ZN ? GO:0003723 ... Q5SHP9 27681416
    97408 5j32:A (1.933) BS01 MG 1.1.1.85 GO:0000287 ... P93832 27137927
    97409 5j32:B (1.933) BS01 MG 1.1.1.85 GO:0000287 ... P93832 27137927
    97410 5j32:C (1.933) BS01 MG 1.1.1.85 GO:0000287 ... P93832 27137927
    97411 5j32:D (1.933) BS01 MG 1.1.1.85 GO:0000287 ... P93832 27137927
    97412 5j33:A (3.492) BS02 MG 1.1.1.85 GO:0000287 ... P93832 27137927
    97413 5j33:C (3.492) BS02 MG 1.1.1.85 GO:0000287 ... P93832 27137927
    97414 5j33:E (3.492) BS02 MG 1.1.1.85 GO:0000287 ... P93832 27137927
    97415 5j33:H (3.492) BS01 MG 1.1.1.85 GO:0000287 ... P93832 27137927
    97416 5j34:A (1.827) BS01 MG 1.1.1.85 GO:0000287 ... P93832 27137927
    97417 5j34:B (1.827) BS01 MG 1.1.1.85 GO:0000287 ... P93832 27137927
    97418 5j34:C (1.827) BS01 MG 1.1.1.85 GO:0000287 ... P93832 27137927
    97419 5j34:D (1.827) BS01 MG 1.1.1.85 GO:0000287 ... P93832 27137927
    97420 5j3c:QB (3.04) BS02 MG ? GO:0003735 ... P80371 27681416
    97421 5j3c:QE (3.04) BS02 MG ? GO:0003723 ... Q5SHQ5 27681416
    97422 5j3c:QI (3.04) BS02 MG ? GO:0000049 ... P80374 27681416
    97423 5j3c:QK (3.04) BS02 MG ? GO:0003735 ... P80376 27681416
    97424 5j3c:QN (3.04) BS02 ZN ? GO:0003735 ... P0DOY6 27681416
    97425 5j3c:QN (3.04) BS03 MG ? GO:0003735 ... P0DOY6 27681416
    97426 5j3c:R0 (3.04) BS03 MG ? GO:0003735 ... P60493 27681416
    97427 5j3c:R0 (3.04) BS04 MG ? GO:0003735 ... P60493 27681416
    97428 5j3c:R0 (3.04) BS05 MG ? GO:0003735 ... P60493 27681416
    97429 5j3c:R1 (3.04) BS02 MG ? GO:0003735 ... P60494 27681416
    97430 5j3c:R3 (3.04) BS03 MG ? GO:0003735 ... Q5SHQ6 27681416
    97431 5j3c:R3 (3.04) BS04 MG ? GO:0003735 ... Q5SHQ6 27681416
    97432 5j3c:R4 (3.04) BS02 ZN ? GO:0003735 ... Q5SJE1 27681416
    97433 5j3c:R5 (3.04) BS02 MG ? GO:0003735 ... P80339 27681416
    97434 5j3c:R5 (3.04) BS03 ZN ? GO:0003735 ... P80339 27681416
    97435 5j3c:R7 (3.04) BS02 MG ? GO:0003735 ... P80340 27681416
    97436 5j3c:R7 (3.04) BS03 MG ? GO:0003735 ... P80340 27681416
    97437 5j3c:R8 (3.04) BS02 MG ? GO:0003735 ... Q5SKU1 27681416
    97438 5j3c:R9 (3.04) BS02 ZN ? GO:0003735 ... Q5SHR2 27681416
    97439 5j3c:RD (3.04) BS03 MG ? GO:0002181 ... P60405 27681416
    97440 5j3c:RD (3.04) BS04 MG ? GO:0002181 ... P60405 27681416
    97441 5j3c:RD (3.04) BS05 MG ? GO:0002181 ... P60405 27681416
    97442 5j3c:RD (3.04) BS06 MG ? GO:0002181 ... P60405 27681416
    97443 5j3c:RD (3.04) BS07 MG ? GO:0002181 ... P60405 27681416
    97444 5j3c:RD (3.04) BS08 MG ? GO:0002181 ... P60405 27681416
    97445 5j3c:RD (3.04) BS09 MG ? GO:0002181 ... P60405 27681416
    97446 5j3c:RD (3.04) BS10 MG ? GO:0002181 ... P60405 27681416
    97447 5j3c:RE (3.04) BS02 MG ? GO:0003735 ... Q5SHN8 27681416
    97448 5j3c:RE (3.04) BS03 MG ? GO:0003735 ... Q5SHN8 27681416
    97449 5j3c:RE (3.04) BS04 MG ? GO:0003735 ... Q5SHN8 27681416
    97450 5j3c:RF (3.04) BS02 MG ? GO:0003735 ... Q5SHN9 27681416
    97451 5j3c:RF (3.04) BS03 MG ? GO:0003735 ... Q5SHN9 27681416
    97452 5j3c:RF (3.04) BS04 MG ? GO:0003735 ... Q5SHN9 27681416
    97453 5j3c:RF (3.04) BS05 MG ? GO:0003735 ... Q5SHN9 27681416
    97454 5j3c:RF (3.04) BS06 MG ? GO:0003735 ... Q5SHN9 27681416
    97455 5j3c:RF (3.04) BS07 MG ? GO:0003735 ... Q5SHN9 27681416
    97456 5j3c:RF (3.04) BS08 MG ? GO:0003735 ... Q5SHN9 27681416
    97457 5j3c:RF (3.04) BS09 MG ? GO:0003735 ... Q5SHN9 27681416
    97458 5j3c:RF (3.04) BS10 MG ? GO:0003735 ... Q5SHN9 27681416
    97459 5j3c:RF (3.04) BS11 MG ? GO:0003735 ... Q5SHN9 27681416
    97460 5j3c:RG (3.04) BS04 MG ? GO:0000049 ... Q5SHQ0 27681416
    97461 5j3c:RG (3.04) BS05 MG ? GO:0000049 ... Q5SHQ0 27681416
    97462 5j3c:RG (3.04) BS06 MG ? GO:0000049 ... Q5SHQ0 27681416
    97463 5j3c:RN (3.04) BS02 MG ? GO:0003729 ... P60488 27681416
    97464 5j3c:RN (3.04) BS03 MG ? GO:0003729 ... P60488 27681416
    97465 5j3c:RP (3.04) BS02 MG ? GO:0003735 ... Q5SHQ7 27681416
    97466 5j3c:RP (3.04) BS03 MG ? GO:0003735 ... Q5SHQ7 27681416
    97467 5j3c:RQ (3.04) BS03 MG ? GO:0000049 ... P60489 27681416
    97468 5j3c:RQ (3.04) BS04 MG ? GO:0000049 ... P60489 27681416
    97469 5j3c:RQ (3.04) BS05 MG ? GO:0000049 ... P60489 27681416
    97470 5j3c:RQ (3.04) BS06 MG ? GO:0000049 ... P60489 27681416
    97471 5j3c:RR (3.04) BS02 MG ? GO:0003735 ... Q9Z9H5 27681416
    97472 5j3c:RR (3.04) BS03 MG ? GO:0003735 ... Q9Z9H5 27681416
    97473 5j3c:RU (3.04) BS02 MG ? GO:0000027 ... P60491 27681416
    97474 5j3c:RU (3.04) BS03 MG ? GO:0000027 ... P60491 27681416
    97475 5j3c:RU (3.04) BS04 MG ? GO:0000027 ... P60491 27681416
    97476 5j3c:RU (3.04) BS05 MG ? GO:0000027 ... P60491 27681416
    97477 5j3c:RV (3.04) BS02 MG ? GO:0003723 ... P60492 27681416
    97478 5j3c:RV (3.04) BS03 MG ? GO:0003723 ... P60492 27681416
    97479 5j3c:RV (3.04) BS04 MG ? GO:0003723 ... P60492 27681416
    97480 5j3c:RY (3.04) BS02 ZN ? GO:0003723 ... Q5SHP9 27681416
    97481 5j3c:XE (3.04) BS02 MG ? GO:0003723 ... Q5SHQ5 27681416
    97482 5j3c:XF (3.04) BS02 MG ? GO:0003735 ... Q5SLP8 27681416
    97483 5j3c:XN (3.04) BS02 ZN ? GO:0003735 ... P0DOY6 27681416
    97484 5j3c:XY (3.04) BS05 MG ? GO:0003747 ... P0A7I0 27681416
    97485 5j3c:Y4 (3.04) BS02 ZN ? GO:0003735 ... Q5SJE1 27681416
    97486 5j3c:Y5 (3.04) BS02 MG ? GO:0003735 ... P80339 27681416
    97487 5j3c:Y5 (3.04) BS03 ZN ? GO:0003735 ... P80339 27681416
    97488 5j3c:Y7 (3.04) BS02 MG ? GO:0003735 ... P80340 27681416
    97489 5j3c:Y9 (3.04) BS02 ZN ? GO:0003735 ... Q5SHR2 27681416
    97490 5j3c:YD (3.04) BS03 MG ? GO:0002181 ... P60405 27681416
    97491 5j3c:YD (3.04) BS04 MG ? GO:0002181 ... P60405 27681416
    97492 5j3c:YD (3.04) BS05 MG ? GO:0002181 ... P60405 27681416
    97493 5j3c:YD (3.04) BS06 MG ? GO:0002181 ... P60405 27681416
    97494 5j3c:YD (3.04) BS07 MG ? GO:0002181 ... P60405 27681416
    97495 5j3c:YD (3.04) BS08 MG ? GO:0002181 ... P60405 27681416
    97496 5j3c:YD (3.04) BS09 MG ? GO:0002181 ... P60405 27681416
    97497 5j3c:YD (3.04) BS10 MG ? GO:0002181 ... P60405 27681416
    97498 5j3c:YE (3.04) BS02 MG ? GO:0003735 ... Q5SHN8 27681416
    97499 5j3c:YE (3.04) BS03 MG ? GO:0003735 ... Q5SHN8 27681416
    97500 5j3c:YF (3.04) BS02 MG ? GO:0003735 ... Q5SHN9 27681416
    97501 5j3c:YF (3.04) BS03 MG ? GO:0003735 ... Q5SHN9 27681416
    97502 5j3c:YF (3.04) BS04 MG ? GO:0003735 ... Q5SHN9 27681416
    97503 5j3c:YF (3.04) BS05 MG ? GO:0003735 ... Q5SHN9 27681416
    97504 5j3c:YG (3.04) BS04 MG ? GO:0000049 ... Q5SHQ0 27681416
    97505 5j3c:YG (3.04) BS05 MG ? GO:0000049 ... Q5SHQ0 27681416
    97506 5j3c:YI (3.04) BS03 MG ? GO:0003735 ... Q5SLQ1 27681416
    97507 5j3c:YQ (3.04) BS03 MG ? GO:0000049 ... P60489 27681416
    97508 5j3c:YQ (3.04) BS04 MG ? GO:0000049 ... P60489 27681416
    97509 5j3c:YR (3.04) BS02 MG ? GO:0003735 ... Q9Z9H5 27681416
    97510 5j3c:YU (3.04) BS02 MG ? GO:0000027 ... P60491 27681416
    97511 5j3c:YV (3.04) BS02 MG ? GO:0003723 ... P60492 27681416
    97512 5j3c:YV (3.04) BS03 MG ? GO:0003723 ... P60492 27681416
    97513 5j3c:YW (3.04) BS02 MG ? GO:0003735 ... Q5SHP3 27681416
    97514 5j3c:YW (3.04) BS03 MG ? GO:0003735 ... Q5SHP3 27681416
    97515 5j3c:YY (3.04) BS02 ZN ? GO:0003723 ... Q5SHP9 27681416
    97516 5j3p:A (3.1) BS01 MG 3.1.4.- GO:0003824 ... O95551 27099339
    97517 5j3p:B (3.1) BS01 MG 3.1.4.- GO:0003824 ... O95551 27099339
    97518 5j3x:A (2.822) BS01 ZN 2.3.2.27 GO:0001784 ... P22681 27609087
    97519 5j3x:A (2.822) BS02 ZN 2.3.2.27 GO:0001784 ... P22681 27609087
    97520 5j3x:A (2.822) BS03 CA 2.3.2.27 GO:0001784 ... P22681 27609087
    97521 5j3x:B (2.822) BS01 ZN 2.3.2.27 GO:0001784 ... P22681 27609087
    97522 5j3x:B (2.822) BS02 ZN 2.3.2.27 GO:0001784 ... P22681 27609087
    97523 5j3x:B (2.822) BS03 CA 2.3.2.27 GO:0001784 ... P22681 27609087
    97524 5j3x:C (2.822) BS01 ZN 2.3.2.27 GO:0001784 ... P22681 27609087
    97525 5j3x:C (2.822) BS02 ZN 2.3.2.27 GO:0001784 ... P22681 27609087
    97526 5j3x:C (2.822) BS03 CA 2.3.2.27 GO:0001784 ... P22681 27609087
    97527 5j3x:D (2.822) BS01 ZN 2.3.2.27 GO:0001784 ... P22681 27609087
    97528 5j3x:D (2.822) BS02 ZN 2.3.2.27 GO:0001784 ... P22681 27609087
    97529 5j3x:D (2.822) BS03 CA 2.3.2.27 GO:0001784 ... P22681 27609087
    97530 5j3x:E (2.822) BS01 ZN 2.3.2.27 GO:0001784 ... P22681 27609087
    97531 5j3x:E (2.822) BS02 ZN 2.3.2.27 GO:0001784 ... P22681 27609087
    97532 5j3x:E (2.822) BS03 CA 2.3.2.27 GO:0001784 ... P22681 27609087
    97533 5j3x:F (2.822) BS01 ZN 2.3.2.27 GO:0001784 ... P22681 27609087
    97534 5j3x:F (2.822) BS02 ZN 2.3.2.27 GO:0001784 ... P22681 27609087
    97535 5j3x:F (2.822) BS03 CA 2.3.2.27 GO:0001784 ... P22681 27609087
    97536 5j3z:A (1.8) BS02 MG 3.1.4.- GO:0003824 ... Q9JJX7 27099339
    97537 5j3z:B (1.8) BS02 MG 3.1.4.- GO:0003824 ... Q9JJX7 27099339
    97538 5j40:A (2.17) BS01 ZN 3.6.4.- GO:0003677 ... P03072 27385654
    97539 5j42:A (1.7) BS02 MN 3.1.4.- GO:0003824 ... Q9JJX7 27099339
    97540 5j42:B (1.7) BS02 MN 3.1.4.- GO:0003824 ... Q9JJX7 27099339
    97541 5j46:A (1.95) BS01 ZN 3.5.1.88 GO:0006412 ... A0A0H3KB98 N/A
    97542 5j47:A (1.99) BS01 ZN 3.6.4.- GO:0003677 ... P03072 27385654
    97543 5j4b:10 (2.6) BS03 MG ? GO:0003735 ... P60493 27079977
    97544 5j4b:10 (2.6) BS04 MG ? GO:0003735 ... P60493 27079977
    97545 5j4b:11 (2.6) BS03 MG ? GO:0003735 ... P60494 27079977
    97546 5j4b:12 (2.6) BS02 MG ? GO:0003735 ... Q5SHP6 27079977
    97547 5j4b:13 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 27079977
    97548 5j4b:13 (2.6) BS04 MG ? GO:0003735 ... Q5SHQ6 27079977
    97549 5j4b:13 (2.6) BS05 MG ? GO:0003735 ... Q5SHQ6 27079977
    97550 5j4b:14 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 27079977
    97551 5j4b:15 (2.6) BS02 MG ? GO:0003735 ... P80339 27079977
    97552 5j4b:15 (2.6) BS03 ZN ? GO:0003735 ... P80339 27079977
    97553 5j4b:16 (2.6) BS02 MG ? GO:0000049 ... P35871 27079977
    97554 5j4b:16 (2.6) BS03 ZN ? GO:0000049 ... P35871 27079977
    97555 5j4b:16 (2.6) BS04 MG ? GO:0000049 ... P35871 27079977
    97556 5j4b:17 (2.6) BS02 MG ? GO:0003735 ... P80340 27079977
    97557 5j4b:17 (2.6) BS03 MG ? GO:0003735 ... P80340 27079977
    97558 5j4b:18 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 27079977
    97559 5j4b:18 (2.6) BS03 MG ? GO:0003735 ... Q5SKU1 27079977
    97560 5j4b:19 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 27079977
    97561 5j4b:1D (2.6) BS03 MG ? GO:0002181 ... P60405 27079977
    97562 5j4b:1D (2.6) BS04 MG ? GO:0002181 ... P60405 27079977
    97563 5j4b:1D (2.6) BS05 MG ? GO:0002181 ... P60405 27079977
    97564 5j4b:1D (2.6) BS06 MG ? GO:0002181 ... P60405 27079977
    97565 5j4b:1D (2.6) BS07 MG ? GO:0002181 ... P60405 27079977
    97566 5j4b:1D (2.6) BS08 MG ? GO:0002181 ... P60405 27079977
    97567 5j4b:1D (2.6) BS09 MG ? GO:0002181 ... P60405 27079977
    97568 5j4b:1D (2.6) BS10 MG ? GO:0002181 ... P60405 27079977
    97569 5j4b:1D (2.6) BS11 MG ? GO:0002181 ... P60405 27079977
    97570 5j4b:1D (2.6) BS12 MG ? GO:0002181 ... P60405 27079977
    97571 5j4b:1E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 27079977
    97572 5j4b:1E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 27079977
    97573 5j4b:1E (2.6) BS04 MG ? GO:0003735 ... Q5SHN8 27079977
    97574 5j4b:1E (2.6) BS05 MG ? GO:0003735 ... Q5SHN8 27079977
    97575 5j4b:1E (2.6) BS06 MG ? GO:0003735 ... Q5SHN8 27079977
    97576 5j4b:1F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 27079977
    97577 5j4b:1F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 27079977
    97578 5j4b:1F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 27079977
    97579 5j4b:1F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 27079977
    97580 5j4b:1F (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 27079977
    97581 5j4b:1F (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 27079977
    97582 5j4b:1F (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 27079977
    97583 5j4b:1F (2.6) BS09 MG ? GO:0003735 ... Q5SHN9 27079977
    97584 5j4b:1F (2.6) BS10 MG ? GO:0003735 ... Q5SHN9 27079977
    97585 5j4b:1F (2.6) BS11 MG ? GO:0003735 ... Q5SHN9 27079977
    97586 5j4b:1F (2.6) BS12 MG ? GO:0003735 ... Q5SHN9 27079977
    97587 5j4b:1F (2.6) BS13 MG ? GO:0003735 ... Q5SHN9 27079977
    97588 5j4b:1G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 27079977
    97589 5j4b:1I (2.6) BS02 MG ? GO:0003735 ... Q5SLQ1 27079977
    97590 5j4b:1N (2.6) BS02 MG ? GO:0003729 ... P60488 27079977
    97591 5j4b:1N (2.6) BS03 MG ? GO:0003729 ... P60488 27079977
    97592 5j4b:1N (2.6) BS04 MG ? GO:0003729 ... P60488 27079977
    97593 5j4b:1O (2.6) BS03 MG ? GO:0003735 ... Q5SHP8 27079977
    97594 5j4b:1O (2.6) BS04 MG ? GO:0003735 ... Q5SHP8 27079977
    97595 5j4b:1P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 27079977
    97596 5j4b:1P (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 27079977
    97597 5j4b:1P (2.6) BS04 MG ? GO:0003735 ... Q5SHQ7 27079977
    97598 5j4b:1P (2.6) BS05 MG ? GO:0003735 ... Q5SHQ7 27079977
    97599 5j4b:1Q (2.6) BS04 MG ? GO:0000049 ... P60489 27079977
    97600 5j4b:1Q (2.6) BS05 MG ? GO:0000049 ... P60489 27079977
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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