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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    96801 5inh:A (1.84) BS03 ZN 3.1.4.39 GO:0003676 ... Q9R1E6 28564542
    96802 5inh:A (1.84) BS04 ZN 3.1.4.39 GO:0003676 ... Q9R1E6 28564542
    96803 5inh:A (1.84) BS05 CA 3.1.4.39 GO:0003676 ... Q9R1E6 28564542
    96804 5inm:A (2.4) BS01 MG 3.1.4.- GO:0003824 ... Q9JJX7 27060144
    96805 5inm:B (2.4) BS01 MG 3.1.4.- GO:0003824 ... Q9JJX7 27060144
    96806 5inm:D (2.4) BS01 MG 3.1.4.- GO:0003824 ... Q9JJX7 27060144
    96807 5inm:E (2.4) BS01 MG 3.1.4.- GO:0003824 ... Q9JJX7 27060144
    96808 5inq:A (1.848) BS02 CA 3.1.4.- GO:0003824 ... Q9JJX7 27060144
    96809 5inq:B (1.848) BS02 CA 3.1.4.- GO:0003824 ... Q9JJX7 27060144
    96810 5ioc:A (1.9) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    96811 5iod:A (1.6) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    96812 5ioo:A (2.521) BS01 MG ? GO:0046872 ... A0A1L1QK08 27578274
    96813 5ip7:A (3.52) BS01 ZN 2.7.7.6 GO:0000428 ... P04050 27193681
    96814 5ip7:A (3.52) BS02 ZN 2.7.7.6 GO:0000428 ... P04050 27193681
    96815 5ip7:A (3.52) BS03 MG 2.7.7.6 GO:0000428 ... P04050 27193681
    96816 5ip7:B (3.52) BS02 ZN 2.7.7.6 GO:0000428 ... P08518 27193681
    96817 5ip7:C (3.52) BS01 ZN ? GO:0003677 ... P16370 27193681
    96818 5ip7:I (3.52) BS01 ZN ? GO:0000428 ... P27999 27193681
    96819 5ip7:I (3.52) BS02 ZN ? GO:0000428 ... P27999 27193681
    96820 5ip7:J (3.52) BS01 ZN ? GO:0000428 ... P22139 27193681
    96821 5ip7:L (3.52) BS01 ZN ? GO:0003677 ... P40422 27193681
    96822 5ip9:A (3.9) BS01 ZN 2.7.7.6 GO:0000428 ... P04050 27193681
    96823 5ip9:A (3.9) BS02 ZN 2.7.7.6 GO:0000428 ... P04050 27193681
    96824 5ip9:B (3.9) BS02 ZN 2.7.7.6 GO:0000428 ... P08518 27193681
    96825 5ip9:C (3.9) BS01 ZN ? GO:0003677 ... P16370 27193681
    96826 5ip9:I (3.9) BS01 ZN ? GO:0000428 ... P27999 27193681
    96827 5ip9:I (3.9) BS02 ZN ? GO:0000428 ... P27999 27193681
    96828 5ip9:J (3.9) BS01 ZN ? GO:0000428 ... P22139 27193681
    96829 5ip9:L (3.9) BS01 ZN ? GO:0003677 ... P40422 27193681
    96830 5ipl:D (3.6) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 27035955
    96831 5ipl:D (3.6) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 27035955
    96832 5ipl:D (3.6) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 27035955
    96833 5ipm:D (4.2) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 27035955
    96834 5ipm:D (4.2) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 27035955
    96835 5ipm:D (4.2) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 27035955
    96836 5ipn:D (4.61) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 27035955
    96837 5ipn:D (4.61) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 27035955
    96838 5ipn:D (4.61) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 27035955
    96839 5ipz:A (2.1) BS01 ZN 4.2.1.1 GO:0004089 ... P22748 28975383
    96840 5ipz:B (2.1) BS01 ZN 4.2.1.1 GO:0004089 ... P22748 28975383
    96841 5ipz:C (2.1) BS01 ZN 4.2.1.1 GO:0004089 ... P22748 28975383
    96842 5ipz:D (2.1) BS01 ZN 4.2.1.1 GO:0004089 ... P22748 28975383
    96843 5iq6:A (3.0) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q6YMS4 27649989
    96844 5iq6:A (3.0) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q6YMS4 27649989
    96845 5iqa:A (2.15) BS02 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96846 5iqa:B (2.15) BS02 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96847 5iqa:C (2.15) BS02 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96848 5iqa:D (2.15) BS02 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96849 5iqb:A (2.3) BS03 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96850 5iqb:B (2.3) BS03 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96851 5iqb:C (2.3) BS03 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96852 5iqb:D (2.3) BS03 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96853 5iqc:A (2.3) BS03 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96854 5iqc:B (2.3) BS03 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96855 5iqc:C (2.3) BS03 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96856 5iqc:D (2.3) BS03 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96857 5iqd:A (2.2) BS03 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96858 5iqd:B (2.2) BS03 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96859 5iqd:C (2.2) BS03 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96860 5iqd:D (2.2) BS03 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96861 5iqe:A (2.5) BS03 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96862 5iqe:B (2.5) BS03 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96863 5iqe:C (2.5) BS03 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96864 5iqe:D (2.5) BS03 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96865 5iqf:A (2.35) BS02 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96866 5iqf:B (2.35) BS02 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96867 5iqf:C (2.35) BS02 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96868 5iqf:D (2.35) BS02 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96869 5iqg:A (2.5) BS03 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96870 5iqg:B (2.5) BS03 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96871 5iqg:C (2.5) BS03 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96872 5iqg:D (2.5) BS03 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96873 5iqh:A (2.25) BS02 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96874 5iqh:B (2.25) BS02 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96875 5iqh:C (2.25) BS02 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96876 5iqh:D (2.25) BS02 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96877 5iqi:A (2.15) BS02 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96878 5iqi:B (2.15) BS02 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96879 5iqi:C (2.15) BS02 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96880 5iqi:D (2.15) BS02 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    96881 5iqk:A (1.75) BS01 ZN 3.5.2.6 GO:0008800 ... A0A059Q5E8 27431213
    96882 5iqk:A (1.75) BS02 ZN 3.5.2.6 GO:0008800 ... A0A059Q5E8 27431213
    96883 5iqk:A (1.75) BS03 ZN 3.5.2.6 GO:0008800 ... A0A059Q5E8 27431213
    96884 5iqk:B (1.75) BS01 ZN 3.5.2.6 GO:0008800 ... A0A059Q5E8 27431213
    96885 5iqk:B (1.75) BS02 ZN 3.5.2.6 GO:0008800 ... A0A059Q5E8 27431213
    96886 5iqk:B (1.75) BS03 ZN 3.5.2.6 GO:0008800 ... A0A059Q5E8 27431213
    96887 5iqk:B (1.75) BS04 ZN 3.5.2.6 GO:0008800 ... A0A059Q5E8 27431213
    96888 5iqn:A (1.0) BS02 CO ? GO:0005515 ... P08190 27351462
    96889 5iqn:G (1.0) BS02 CO ? GO:0005515 ... P08190 27351462
    96890 5iqo:A (1.302) BS03 CO ? GO:0005515 ... P08190 27351462
    96891 5iqr:8 (3.0) BS04 ZN 2.7.6.5 GO:0005515 ... P0AG20 27279228
    96892 5iqr:U (3.0) BS02 MG ? GO:0000027 ... P60624 27279228
    96893 5iqr:a (3.0) BS02 ZN ? GO:0002181 ... P0A7M9 27279228
    96894 5iqr:f (3.0) BS02 ZN ? GO:0002181 ... P0A7Q6 27279228
    96895 5iqr:r (3.0) BS03 MG ? GO:0000049 ... P0A7S9 27279228
    96896 5iqs:A (2.0) BS01 FE2 ? GO:0046872 ... A0A067YX61 27348090
    96897 5iqs:B (2.0) BS01 FE2 ? GO:0046872 ... A0A067YX61 27348090
    96898 5iqs:C (2.0) BS01 FE2 ? GO:0046872 ... A0A067YX61 27348090
    96899 5iqt:A (2.4) BS01 FE2 ? GO:0046872 ... A0A067YX61 27348090
    96900 5iqt:B (2.4) BS01 FE2 ? GO:0046872 ... A0A067YX61 27348090
    96901 5iqt:C (2.4) BS01 FE2 ? GO:0046872 ... A0A067YX61 27348090
    96902 5iqu:A (2.51) BS01 FE2 ? GO:0046872 ... A0A067YX61 27348090
    96903 5iqv:A (2.4) BS01 FE2 ? GO:0046872 ... A0A067YX61 27348090
    96904 5iqv:B (2.4) BS01 FE2 ? GO:0046872 ... A0A067YX61 27348090
    96905 5iqv:C (2.4) BS01 FE2 ? GO:0046872 ... A0A067YX61 27348090
    96906 5ir4:A (1.48) BS01 FE2 1.13.11.-
    1.13.11.33    		 GO:0016702 ... Q9I4G8 27500637
    96907 5ir5:A (1.9) BS01 FE2 1.13.11.-
    1.13.11.33    		 GO:0016702 ... Q9I4G8 27500637
    96908 5irb:A (2.0) BS01 CA ? N/A A1YIY2 28808685
    96909 5irb:A (2.0) BS02 CA ? N/A A1YIY2 28808685
    96910 5irb:A (2.0) BS03 CA ? N/A A1YIY2 28808685
    96911 5irb:A (2.0) BS04 CA ? N/A A1YIY2 28808685
    96912 5irb:A (2.0) BS05 CA ? N/A A1YIY2 28808685
    96913 5irb:A (2.0) BS06 CA ? N/A A1YIY2 28808685
    96914 5irb:A (2.0) BS07 CA ? N/A A1YIY2 28808685
    96915 5irb:A (2.0) BS08 CA ? N/A A1YIY2 28808685
    96916 5irb:A (2.0) BS09 CA ? N/A A1YIY2 28808685
    96917 5irb:B (2.0) BS01 CA ? N/A A1YIY2 28808685
    96918 5irb:B (2.0) BS02 CA ? N/A A1YIY2 28808685
    96919 5irb:B (2.0) BS03 CA ? N/A A1YIY2 28808685
    96920 5irb:B (2.0) BS04 CA ? N/A A1YIY2 28808685
    96921 5irb:B (2.0) BS05 CA ? N/A A1YIY2 28808685
    96922 5irb:B (2.0) BS06 CA ? N/A A1YIY2 28808685
    96923 5irb:B (2.0) BS07 CA ? N/A A1YIY2 28808685
    96924 5irb:B (2.0) BS08 CA ? N/A A1YIY2 28808685
    96925 5irb:B (2.0) BS09 MG ? N/A A1YIY2 28808685
    96926 5irb:B (2.0) BS10 MG ? N/A A1YIY2 28808685
    96927 5irc:D (1.72) BS02 MG 3.6.5.2 GO:0000902 ... P61586 27481945
    96928 5irc:F (1.72) BS02 MG 3.6.5.2 GO:0000902 ... P61586 27481945
    96929 5irp:A (2.1) BS03 MG 5.1.1.1 GO:0003824 ... P94494 30977502
    96930 5irp:B (2.1) BS03 MG 5.1.1.1 GO:0003824 ... P94494 30977502
    96931 5irp:B (2.1) BS04 MG 5.1.1.1 GO:0003824 ... P94494 30977502
    96932 5irr:A (2.04) BS01 MG ? GO:0005525 ... A8IYS5 28476887
    96933 5irr:B (2.04) BS02 MG ? GO:0005525 ... A8IYS5 28476887
    96934 5iry:A (3.095) BS01 CA ? GO:0005509 ... Q08554 27298358
    96935 5iry:A (3.095) BS02 CA ? GO:0005509 ... Q08554 27298358
    96936 5iry:A (3.095) BS03 CA ? GO:0005509 ... Q08554 27298358
    96937 5iry:A (3.095) BS04 CA ? GO:0005509 ... Q08554 27298358
    96938 5iry:A (3.095) BS05 CA ? GO:0005509 ... Q08554 27298358
    96939 5iry:A (3.095) BS06 CA ? GO:0005509 ... Q08554 27298358
    96940 5iry:A (3.095) BS07 CA ? GO:0005509 ... Q08554 27298358
    96941 5iry:A (3.095) BS08 CA ? GO:0005509 ... Q08554 27298358
    96942 5iry:A (3.095) BS09 CA ? GO:0005509 ... Q08554 27298358
    96943 5iry:A (3.095) BS10 CA ? GO:0005509 ... Q08554 27298358
    96944 5iry:A (3.095) BS11 CA ? GO:0005509 ... Q08554 27298358
    96945 5iry:A (3.095) BS12 CA ? GO:0005509 ... Q08554 27298358
    96946 5iry:B (3.095) BS01 CA ? GO:0005509 ... Q08554 27298358
    96947 5iry:B (3.095) BS02 CA ? GO:0005509 ... Q08554 27298358
    96948 5iry:B (3.095) BS03 CA ? GO:0005509 ... Q08554 27298358
    96949 5iry:B (3.095) BS04 CA ? GO:0005509 ... Q08554 27298358
    96950 5iry:B (3.095) BS05 CA ? GO:0005509 ... Q08554 27298358
    96951 5iry:B (3.095) BS06 CA ? GO:0005509 ... Q08554 27298358
    96952 5iry:B (3.095) BS07 CA ? GO:0005509 ... Q08554 27298358
    96953 5iry:B (3.095) BS08 CA ? GO:0005509 ... Q08554 27298358
    96954 5iry:B (3.095) BS09 CA ? GO:0005509 ... Q08554 27298358
    96955 5iry:B (3.095) BS10 CA ? GO:0005509 ... Q08554 27298358
    96956 5iry:B (3.095) BS11 CA ? GO:0005509 ... Q08554 27298358
    96957 5iry:B (3.095) BS12 CA ? GO:0005509 ... Q08554 27298358
    96958 5is2:A (1.881) BS01 MG 3.1.3.3 GO:0000287 ... A0QJI1 N/A
    96959 5isl:A (1.694) BS02 MN 1.14.11.67 N/A P29375 27427228
    96960 5isr:A (1.9) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    96961 5isy:A (2.354) BS01 ZN 3.6.1.-
    3.6.1.22    		 GO:0000210 ... P32664 27561816
    96962 5isy:C (2.354) BS01 ZN 3.6.1.-
    3.6.1.22    		 GO:0000210 ... P32664 27561816
    96963 5it0:A (1.968) BS01 MG 3.1.3.3 GO:0000287 ... A0QJI1 N/A
    96964 5it4:A (2.102) BS01 MG 3.1.3.3 GO:0000287 ... A0QJI1 N/A
    96965 5it5:A (2.648) BS02 ZN ? N/A Q5SLC9 27667690
    96966 5it5:B (2.648) BS02 ZN ? N/A Q5SLC9 27667690
    96967 5it5:B (2.648) BS03 MG ? N/A Q5SLC9 27667690
    96968 5it5:C (2.648) BS02 ZN ? N/A Q5SLC9 27667690
    96969 5it5:D (2.648) BS02 ZN ? N/A Q5SLC9 27667690
    96970 5it5:E (2.648) BS02 ZN ? N/A Q5SLC9 27667690
    96971 5it5:F (2.648) BS01 ZN ? N/A Q5SLC9 27667690
    96972 5it7:1 (3.6) BS04 MG N/A GO:0003924 ... N/A 27159451
    96973 5it7:a (3.6) BS02 ZN ? GO:0003735 ... Q6CS01 27159451
    96974 5it7:a (3.6) BS03 MG ? GO:0003735 ... Q6CS01 27159451
    96975 5it7:b (3.6) BS02 ZN ? GO:0000028 ... Q6CNL2 27159451
    96976 5it7:f (3.6) BS02 ZN ? GO:0003735 ... P69061 27159451
    96977 5it7:jj (3.6) BS03 ZN ? GO:0003723 ... Q6CUW0 27159451
    96978 5it7:mm (3.6) BS02 ZN ? GO:0003735 ... Q9Y854 27159451
    96979 5it7:oo (3.6) BS02 ZN ? GO:0003735 ... P31027 27159451
    96980 5it8:AB (3.12) BS02 ZN ? GO:0000028 ... P0A7V0 27382179
    96981 5it8:C5 (3.12) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    96982 5it8:D5 (3.12) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    96983 5it9:a (3.8) BS02 ZN ? GO:0003735 ... Q6CS01 27159451
    96984 5iti:A (1.95) BS01 CA 3.1.3.16 GO:0004722 ... Q8DGS1 N/A
    96985 5iti:A (1.95) BS02 CA 3.1.3.16 GO:0004722 ... Q8DGS1 N/A
    96986 5iti:A (1.95) BS03 CA 3.1.3.16 GO:0004722 ... Q8DGS1 N/A
    96987 5iti:A (1.95) BS04 CA 3.1.3.16 GO:0004722 ... Q8DGS1 N/A
    96988 5iu0:A (1.499) BS01 MG 4.1.1.39 GO:0000287 ... O03042 29372894
    96989 5iu0:B (1.499) BS02 MG 4.1.1.39 GO:0000287 ... O03042 29372894
    96990 5iu9:A (3.59) BS01 CA ? GO:0005509 ... F8W3X3 27787195
    96991 5iu9:A (3.59) BS02 CA ? GO:0005509 ... F8W3X3 27787195
    96992 5iu9:A (3.59) BS03 CA ? GO:0005509 ... F8W3X3 27787195
    96993 5iu9:A (3.59) BS04 CA ? GO:0005509 ... F8W3X3 27787195
    96994 5iu9:A (3.59) BS05 CA ? GO:0005509 ... F8W3X3 27787195
    96995 5iu9:A (3.59) BS06 CA ? GO:0005509 ... F8W3X3 27787195
    96996 5iu9:A (3.59) BS07 CA ? GO:0005509 ... F8W3X3 27787195
    96997 5iu9:A (3.59) BS08 CA ? GO:0005509 ... F8W3X3 27787195
    96998 5iu9:A (3.59) BS09 CA ? GO:0005509 ... F8W3X3 27787195
    96999 5iu9:B (3.59) BS01 CA ? GO:0005509 ... F8W3X3 27787195
    97000 5iu9:B (3.59) BS02 CA ? GO:0005509 ... F8W3X3 27787195
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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