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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    96601 5ief:B (2.38) BS01 CA ? N/A O08795 27462106
    96602 5ief:B (2.38) BS02 CA ? N/A O08795 27462106
    96603 5ieg:B (1.822) BS01 CA ? N/A O08795 27462106
    96604 5ieg:B (1.822) BS02 CA ? N/A O08795 27462106
    96605 5ife:D (3.1) BS01 ZN ? GO:0000398 ... Q7RTV0 27720643
    96606 5ife:D (3.1) BS02 ZN ? GO:0000398 ... Q7RTV0 27720643
    96607 5ife:D (3.1) BS03 ZN ? GO:0000398 ... Q7RTV0 27720643
    96608 5ifo:A (3.2) BS01 RU ? GO:0003677 ... P02768 27196130
    96609 5igb:A (1.8) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    96610 5igc:A (1.8) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    96611 5igd:A (1.8) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    96612 5ige:A (1.8) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    96613 5igf:A (1.7) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    96614 5igg:A (1.7) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    96615 5igv:A (1.55) BS01 MG ? GO:0016740 ... O32553 28416110
    96616 5igv:A (1.55) BS02 CA ? GO:0016740 ... O32553 28416110
    96617 5igw:A (2.096) BS02 MG ? GO:0016740 ... O32553 28416110
    96618 5igw:A (2.096) BS03 MG ? GO:0016740 ... O32553 28416110
    96619 5igy:A (1.45) BS01 CA ? GO:0016740 ... O32553 28416110
    96620 5igz:A (1.6) BS02 MG ? GO:0016740 ... O32553 28416110
    96621 5igz:A (1.6) BS03 MG ? GO:0016740 ... O32553 28416110
    96622 5ih0:A (1.65) BS01 MG ? GO:0016740 ... O32553 28416110
    96623 5ih1:A (1.31) BS02 MG ? GO:0016740 ... O32553 28416110
    96624 5ih1:A (1.31) BS03 CA ? GO:0016740 ... O32553 28416110
    96625 5ih4:A (1.9) BS01 ZN 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P48730 27049670
    96626 5ih5:A (2.25) BS01 ZN 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P48730 27049670
    96627 5ih6:A (2.3) BS01 ZN 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P48730 27049670
    96628 5ihe:A (2.5) BS02 FE 2.7.7.7
    3.1.11.1    		 GO:0003676 ... Q9V2F3 27548043
    96629 5ihe:A (2.5) BS03 ZN 2.7.7.7
    3.1.11.1    		 GO:0003676 ... Q9V2F3 27548043
    96630 5ihe:B (2.5) BS02 FE 2.7.7.7
    3.1.11.1    		 GO:0003676 ... Q9V2F3 27548043
    96631 5ihe:B (2.5) BS03 ZN 2.7.7.7
    3.1.11.1    		 GO:0003676 ... Q9V2F3 27548043
    96632 5ihe:B (2.5) BS04 CA 2.7.7.7
    3.1.11.1    		 GO:0003676 ... Q9V2F3 27548043
    96633 5iif:A (1.85) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    96634 5iih:A (2.4) BS01 ZN ? GO:0003677 ... P35747 28567254
    96635 5iii:A (1.8) BS05 MG 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 27481934
    96636 5iij:A (1.724) BS05 MG 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 27481934
    96637 5iin:A (2.15) BS05 MG 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 27481934
    96638 5iit:B (2.134) BS01 MG ?
    2.7.4.1    		 N/A O75367
    P47075    		 27080106
    96639 5iit:C (2.134) BS01 MG ?
    2.7.4.1    		 N/A O75367
    P47075    		 27080106
    96640 5iiu:A (2.3) BS01 ZN ? GO:0003677 ... P35747 28567254
    96641 5iiu:A (2.3) BS02 ZN ? GO:0003677 ... P35747 28567254
    96642 5iiu:A (2.3) BS03 ZN ? GO:0003677 ... P35747 28567254
    96643 5iiu:A (2.3) BS04 ZN ? GO:0003677 ... P35747 28567254
    96644 5iiu:A (2.3) BS05 ZN ? GO:0003677 ... P35747 28567254
    96645 5iiu:A (2.3) BS06 ZN ? GO:0003677 ... P35747 28567254
    96646 5iiu:A (2.3) BS07 ZN ? GO:0003677 ... P35747 28567254
    96647 5iix:A (2.2) BS01 ZN ? GO:0003677 ... P35747 28567254
    96648 5iix:A (2.2) BS02 ZN ? GO:0003677 ... P35747 28567254
    96649 5iix:A (2.2) BS03 ZN ? GO:0003677 ... P35747 28567254
    96650 5iix:A (2.2) BS04 ZN ? GO:0003677 ... P35747 28567254
    96651 5iix:A (2.2) BS05 ZN ? GO:0003677 ... P35747 28567254
    96652 5iix:A (2.2) BS06 ZN ? GO:0003677 ... P35747 28567254
    96653 5iiy:A (1.888) BS02 CA ? N/A A3CM52 27685666
    96654 5iiy:A (1.888) BS03 CA ? N/A A3CM52 27685666
    96655 5iiy:B (1.888) BS01 CA ? N/A A3CM52 27685666
    96656 5iiy:B (1.888) BS02 CA ? N/A A3CM52 27685666
    96657 5ij1:A (1.8) BS02 CA ? N/A A3CM52 27685666
    96658 5ij1:A (1.8) BS03 CA ? N/A A3CM52 27685666
    96659 5ij1:B (1.8) BS01 CA ? N/A A3CM52 27685666
    96660 5ij1:B (1.8) BS02 CA ? N/A A3CM52 27685666
    96661 5ij2:A (1.683) BS02 CA ? N/A A3CM52 27685666
    96662 5ij2:A (1.683) BS03 CA ? N/A A3CM52 27685666
    96663 5ij2:B (1.683) BS01 CA ? N/A A3CM52 27685666
    96664 5ij2:B (1.683) BS02 CA ? N/A A3CM52 27685666
    96665 5ij3:A (1.7) BS02 CA ? N/A A3CM52 27685666
    96666 5ij3:A (1.7) BS03 CA ? N/A A3CM52 27685666
    96667 5ij3:B (1.7) BS01 CA ? N/A A3CM52 27685666
    96668 5ij3:B (1.7) BS02 CA ? N/A A3CM52 27685666
    96669 5ij4:A (-1.00) BS01 ZN ? GO:0008270 ... P53899 27662200
    96670 5ij4:A (-1.00) BS02 ZN ? GO:0008270 ... P53899 27662200
    96671 5ij5:A (2.55) BS01 ZN ? GO:0003677 ... P35747 28567254
    96672 5ij5:A (2.55) BS02 ZN ? GO:0003677 ... P35747 28567254
    96673 5ij5:A (2.55) BS03 ZN ? GO:0003677 ... P35747 28567254
    96674 5ij5:A (2.55) BS04 ZN ? GO:0003677 ... P35747 28567254
    96675 5ij5:A (2.55) BS05 ZN ? GO:0003677 ... P35747 28567254
    96676 5ij5:A (2.55) BS06 ZN ? GO:0003677 ... P35747 28567254
    96677 5ij5:A (2.55) BS07 ZN ? GO:0003677 ... P35747 28567254
    96678 5ij7:A (2.62) BS02 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96679 5ij7:A (2.62) BS03 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96680 5ij7:A (2.62) BS04 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96681 5ij7:A (2.62) BS05 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96682 5ij7:A (2.62) BS06 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96683 5ij7:A (2.62) BS07 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96684 5ij7:A (2.62) BS08 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96685 5ij7:B (2.62) BS02 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96686 5ij7:B (2.62) BS03 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96687 5ij7:B (2.62) BS04 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96688 5ij7:B (2.62) BS05 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96689 5ij7:B (2.62) BS06 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96690 5ij7:B (2.62) BS07 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96691 5ij7:B (2.62) BS08 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96692 5ij8:A (2.99) BS02 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96693 5ij8:A (2.99) BS03 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96694 5ij8:A (2.99) BS04 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96695 5ij8:A (2.99) BS05 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96696 5ij8:A (2.99) BS06 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96697 5ij8:A (2.99) BS07 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96698 5ij8:A (2.99) BS08 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96699 5ij8:B (2.99) BS02 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96700 5ij8:B (2.99) BS03 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96701 5ij8:B (2.99) BS04 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96702 5ij8:B (2.99) BS05 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96703 5ij8:B (2.99) BS06 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96704 5ij8:B (2.99) BS07 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96705 5ij8:B (2.99) BS08 ZN 2.1.1.356 GO:0006338 ... G1KPH4
    Q15910    		 27122193
    96706 5ije:A (2.4) BS01 ZN ? GO:0003677 ... P35747 28567254
    96707 5ije:A (2.4) BS02 ZN ? GO:0003677 ... P35747 28567254
    96708 5ije:A (2.4) BS03 ZN ? GO:0003677 ... P35747 28567254
    96709 5ije:A (2.4) BS04 ZN ? GO:0003677 ... P35747 28567254
    96710 5ije:A (2.4) BS05 ZN ? GO:0003677 ... P35747 28567254
    96711 5ijf:A (2.65) BS01 ZN ? GO:0003677 ... P02768 28567254
    96712 5ijl:A (2.19) BS01 ZN 2.7.7.7
    3.1.11.1    		 GO:0003677 ... Q9V2F4 27548043
    96713 5ijl:A (2.19) BS02 ZN 2.7.7.7
    3.1.11.1    		 GO:0003677 ... Q9V2F4 27548043
    96714 5ijq:A (2.05) BS02 ZN 3.1.4.39 GO:0001953 ... Q64610 27268273
    96715 5ijq:A (2.05) BS03 ZN 3.1.4.39 GO:0001953 ... Q64610 27268273
    96716 5ijq:A (2.05) BS05 CA 3.1.4.39 GO:0001953 ... Q64610 27268273
    96717 5ijs:A (2.2) BS02 ZN 3.1.4.39 GO:0001953 ... Q64610 27268273
    96718 5ijs:A (2.2) BS03 ZN 3.1.4.39 GO:0001953 ... Q64610 27268273
    96719 5ijs:A (2.2) BS04 CA 3.1.4.39 GO:0001953 ... Q64610 27268273
    96720 5iju:A (1.7) BS01 CU N/A N/A N/A 27722375
    96721 5iju:B (1.7) BS01 CA N/A N/A N/A 27722375
    96722 5iju:B (1.7) BS02 CU N/A N/A N/A 27722375
    96723 5ik0:A (2.2) BS01 MG 4.2.3.61 GO:0000287 ... Q40577 27328867
    96724 5ik0:A (2.2) BS02 MG 4.2.3.61 GO:0000287 ... Q40577 27328867
    96725 5ik4:A (1.27) BS01 CA ? N/A Q60675 27526028
    96726 5ik4:A (1.27) BS02 CA ? N/A Q60675 27526028
    96727 5ik5:A (1.39) BS02 CA ? N/A Q60675 27526028
    96728 5ik5:A (1.39) BS03 CA ? N/A Q60675 27526028
    96729 5ik6:A (2.3) BS01 MG 4.2.3.61 GO:0000287 ... Q40577 27328867
    96730 5ik6:A (2.3) BS02 MG 4.2.3.61 GO:0000287 ... Q40577 27328867
    96731 5ik6:A (2.3) BS03 MG 4.2.3.61 GO:0000287 ... Q40577 27328867
    96732 5ik7:A (2.0) BS01 CA ? N/A Q60675 27526028
    96733 5ik7:A (2.0) BS02 CA ? N/A Q60675 27526028
    96734 5ik7:B (2.0) BS01 CA ? N/A Q60675 27526028
    96735 5ik7:B (2.0) BS02 CA ? N/A Q60675 27526028
    96736 5ik8:A (2.0) BS01 CA ? N/A Q60675 27526028
    96737 5ik8:A (2.0) BS02 CA ? N/A Q60675 27526028
    96738 5ik8:B (2.0) BS03 CA ? N/A Q60675 27526028
    96739 5ik8:B (2.0) BS04 CA ? N/A Q60675 27526028
    96740 5ik9:A (2.23) BS01 MG 4.2.3.61 GO:0000287 ... Q40577 27328867
    96741 5ik9:A (2.23) BS02 MG 4.2.3.61 GO:0000287 ... Q40577 27328867
    96742 5ik9:A (2.23) BS03 MG 4.2.3.61 GO:0000287 ... Q40577 27328867
    96743 5ika:A (2.45) BS01 MG 4.2.3.61 GO:0000287 ... Q40577 27328867
    96744 5ika:A (2.45) BS02 MG 4.2.3.61 GO:0000287 ... Q40577 27328867
    96745 5ika:A (2.45) BS03 MG 4.2.3.61 GO:0000287 ... Q40577 27328867
    96746 5ikf:A (2.8) BS01 ZN 3.6.4.- N/A Q9P793 27105116
    96747 5ikf:A (2.8) BS02 ZN 3.6.4.- N/A Q9P793 27105116
    96748 5ikh:A (2.1) BS02 MG 4.2.3.61 GO:0000287 ... Q40577 27328867
    96749 5ikh:A (2.1) BS03 MG 4.2.3.61 GO:0000287 ... Q40577 27328867
    96750 5ikj:A (2.3) BS01 ZN ? GO:0000183 ... O13881 27105116
    96751 5ikk:A (2.4) BS01 ZN 3.5.1.98 GO:0000118 ... P56523 27105116
    96752 5ikk:A (2.4) BS02 ZN 3.5.1.98 GO:0000118 ... P56523 27105116
    96753 5ikk:A (2.4) BS03 MG 3.5.1.98 GO:0000118 ... P56523 27105116
    96754 5iku:A (1.9) BS01 CA 3.4.24.3 N/A Q9X721 30035850
    96755 5iku:A (1.9) BS02 CA 3.4.24.3 N/A Q9X721 30035850
    96756 5iku:A (1.9) BS03 CA 3.4.24.3 N/A Q9X721 30035850
    96757 5iku:A (1.9) BS04 CA 3.4.24.3 N/A Q9X721 30035850
    96758 5iky:A (2.5) BS01 MG N/A GO:0043720 ... N/A 27226606
    96759 5ikz:A (2.8) BS01 MG N/A GO:0043720 ... N/A 27226606
    96760 5il3:A (1.85) BS01 MG 4.2.3.61 GO:0000287 ... Q40577 N/A
    96761 5il8:A (2.3) BS01 CA 4.2.3.61 GO:0000287 ... Q40577 N/A
    96762 5il8:A (2.3) BS02 CA 4.2.3.61 GO:0000287 ... Q40577 N/A
    96763 5ild:A (2.12) BS01 MG 4.2.3.61 GO:0000287 ... Q40577 N/A
    96764 5ilg:A (2.4) BS01 MG 1.1.1.-
    1.1.1.105    		 GO:0000166 ... Q9VV42 27809489
    96765 5ilg:B (2.4) BS01 MG 1.1.1.-
    1.1.1.105    		 GO:0000166 ... Q9VV42 27809489
    96766 5ilh:A (2.1) BS01 CA 4.2.3.61 GO:0000287 ... Q40577 N/A
    96767 5ilh:A (2.1) BS02 CA 4.2.3.61 GO:0000287 ... Q40577 N/A
    96768 5ili:A (1.9) BS01 MG 4.2.3.61 GO:0000287 ... Q40577 N/A
    96769 5ily:A (2.45) BS01 MG 4.2.3.61 GO:0000287 ... Q40577 N/A
    96770 5img:C (1.844) BS01 CO N/A GO:0006508 ... N/A N/A
    96771 5img:E (1.844) BS01 CO N/A GO:0006508 ... N/A N/A
    96772 5img:G (1.844) BS01 CO N/A GO:0006508 ... N/A N/A
    96773 5img:H (1.844) BS01 CO N/A GO:0006508 ... N/A N/A
    96774 5imh:B (2.471) BS01 CO N/A GO:0006508 ... N/A N/A
    96775 5imh:C (2.471) BS01 CO N/A GO:0006508 ... N/A N/A
    96776 5imi:A (2.462) BS02 MG 4.2.3.9 GO:0016829 ... Q9UR08 27172425
    96777 5imi:B (2.462) BS02 MG 4.2.3.9 GO:0016829 ... Q9UR08 27172425
    96778 5imi:C (2.462) BS02 MG 4.2.3.9 GO:0016829 ... Q9UR08 27172425
    96779 5imi:D (2.462) BS02 MG 4.2.3.9 GO:0016829 ... Q9UR08 27172425
    96780 5imn:A (2.527) BS02 MG 4.2.3.9 GO:0016829 ... Q9UR08 27172425
    96781 5imn:B (2.527) BS02 MG 4.2.3.9 GO:0016829 ... Q9UR08 27172425
    96782 5imn:C (2.527) BS02 MG 4.2.3.9 GO:0016829 ... Q9UR08 27172425
    96783 5imn:D (2.527) BS02 MG 4.2.3.9 GO:0016829 ... Q9UR08 27172425
    96784 5imp:A (2.038) BS02 MG 4.2.3.9 GO:0016829 ... Q9UR08 27172425
    96785 5imp:B (2.038) BS02 MG 4.2.3.9 GO:0016829 ... Q9UR08 27172425
    96786 5imp:C (2.038) BS02 MG 4.2.3.9 GO:0016829 ... Q9UR08 27172425
    96787 5imp:D (2.038) BS02 MG 4.2.3.9 GO:0016829 ... Q9UR08 27172425
    96788 5ims:A (1.984) BS02 MG 2.2.1.6 GO:0000287 ... P07342 N/A
    96789 5ims:B (1.984) BS03 MG 2.2.1.6 GO:0000287 ... P07342 N/A
    96790 5imt:A (2.7001) BS01 ZN ? GO:0005576 ... Q9LCB8 27499440
    96791 5imt:A (2.7001) BS02 ZN ? GO:0005576 ... Q9LCB8 27499440
    96792 5imt:D (2.7001) BS01 ZN ? N/A P13987 27499440
    96793 5in2:A (1.55) BS01 ZN 1.15.1.1 GO:0004784 ... Q07449 N/A
    96794 5in2:A (1.55) BS02 CU 1.15.1.1 GO:0004784 ... Q07449 N/A
    96795 5in3:A (1.73) BS02 ZN 2.7.7.12 GO:0005515 ... P07902 27005423
    96796 5in3:B (1.73) BS01 ZN 2.7.7.12 GO:0005515 ... P07902 27005423
    96797 5in8:A (2.35) BS01 MG 4.2.3.9 GO:0016829 ... Q9UR08 27172425
    96798 5in8:B (2.35) BS02 MG 4.2.3.9 GO:0016829 ... Q9UR08 27172425
    96799 5in8:C (2.35) BS01 MG 4.2.3.9 GO:0016829 ... Q9UR08 27172425
    96800 5in8:D (2.35) BS01 MG 4.2.3.9 GO:0016829 ... Q9UR08 27172425
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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