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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    96401 5i4o:B (2.05) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96402 5i4o:C (2.05) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96403 5i4o:C (2.05) BS04 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96404 5i4o:C (2.05) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96405 5i4o:C (2.05) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96406 5i4o:C (2.05) BS07 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96407 5i4o:D (2.05) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96408 5i4o:D (2.05) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96409 5i4o:D (2.05) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96410 5i4o:D (2.05) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96411 5i4o:D (2.05) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96412 5i51:A (1.54) BS03 CA 2.2.1.1 GO:0003824 ... P34736 27578891
    96413 5i5e:A (1.62) BS03 CA 2.2.1.1 GO:0003824 ... P34736 27578891
    96414 5i5l:A (2.7) BS02 CA 2.7.13.3 GO:0006355 ... Q7CY45 27466363
    96415 5i5m:A (1.37) BS01 CA 1.7.2.4 GO:0004129 ... Q12M27 26885878
    96416 5i5m:B (1.37) BS01 CA 1.7.2.4 GO:0004129 ... Q12M27 26885878
    96417 5i67:A (2.602) BS02 MN 4.1.1.32 GO:0004611 ... A5TYT6 N/A
    96418 5i6k:A (1.07) BS01 CU 1.7.2.1 GO:0005507 ... P25006 27437114
    96419 5i6k:A (1.07) BS02 CU 1.7.2.1 GO:0005507 ... P25006 27437114
    96420 5i6l:A (1.08) BS01 CU 1.7.2.1 GO:0005507 ... P25006 27437114
    96421 5i6l:A (1.08) BS02 CU 1.7.2.1 GO:0005507 ... P25006 27437114
    96422 5i6m:A (1.09) BS01 CU 1.7.2.1 GO:0005507 ... P25006 27437114
    96423 5i6m:A (1.09) BS02 CU 1.7.2.1 GO:0005507 ... P25006 27437114
    96424 5i6n:A (1.22) BS01 CU 1.7.2.1 GO:0005507 ... P25006 27437114
    96425 5i6n:A (1.22) BS02 CU 1.7.2.1 GO:0005507 ... P25006 27437114
    96426 5i6o:A (1.45) BS01 CU 1.7.2.1 GO:0005507 ... P25006 27437114
    96427 5i6o:A (1.45) BS02 CU 1.7.2.1 GO:0005507 ... P25006 27437114
    96428 5i6p:A (1.56) BS01 CU 1.7.2.1 GO:0005507 ... P25006 27437114
    96429 5i6p:A (1.56) BS02 CU 1.7.2.1 GO:0005507 ... P25006 27437114
    96430 5i6w:A (1.9) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    96431 5i6x:A (3.14) BS03 NA ? GO:0016020 ... P31645 27049939
    96432 5i6y:A (1.9) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    96433 5i71:A (3.15) BS03 NA ? GO:0016020 ... P31645 27049939
    96434 5i71:A (3.15) BS04 NA ? GO:0016020 ... P31645 27049939
    96435 5i72:A (2.9) BS01 ZN ? GO:0003723 ... O73557 26912609
    96436 5i72:A (2.9) BS02 ZN ? GO:0003723 ... O73557 26912609
    96437 5i72:B (2.9) BS01 ZN ? GO:0003723 ... O73557 26912609
    96438 5i72:B (2.9) BS02 ZN ? GO:0003723 ... O73557 26912609
    96439 5i73:A (3.24) BS04 NA ? GO:0016020 ... P31645 27049939
    96440 5i73:A (3.24) BS05 NA ? GO:0016020 ... P31645 27049939
    96441 5i75:A (3.49) BS04 NA ? GO:0016020 ... P31645 27049939
    96442 5i78:A (1.58) BS01 CA 3.2.1.4 GO:0000272 ... O74706 27154222
    96443 5i78:A (1.58) BS02 CA 3.2.1.4 GO:0000272 ... O74706 27154222
    96444 5i79:B (2.35) BS04 CA 3.2.1.4 GO:0000272 ... O74706 27154222
    96445 5i7c:A (2.804) BS01 ZN ? N/A P54623 28575671
    96446 5i7c:B (2.804) BS01 ZN ? N/A P54623 28575671
    96447 5i7c:C (2.804) BS01 ZN ? N/A P54623 28575671
    96448 5i7c:D (2.804) BS01 ZN ? N/A P54623 28575671
    96449 5i81:A (2.25) BS01 ZN 3.1.4.12
    3.1.4.3
    GO:0001778 ... P17405 27725636
    96450 5i81:A (2.25) BS02 ZN 3.1.4.12
    3.1.4.3
    GO:0001778 ... P17405 27725636
    96451 5i85:A (2.5) BS02 ZN 3.1.4.12
    3.1.4.3
    GO:0001778 ... P17405 27725636
    96452 5i85:A (2.5) BS03 ZN 3.1.4.12
    3.1.4.3
    GO:0001778 ... P17405 27725636
    96453 5i8b:A (1.5218) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92793 27190605
    96454 5i8b:A (1.5218) BS02 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92793 27190605
    96455 5i8b:A (1.5218) BS03 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92793 27190605
    96456 5i8d:A (2.69) BS01 CA ? GO:0005509 ... Q99PF4 30033219
    96457 5i8d:A (2.69) BS02 CA ? GO:0005509 ... Q99PF4 30033219
    96458 5i8d:A (2.69) BS03 CA ? GO:0005509 ... Q99PF4 30033219
    96459 5i8d:A (2.69) BS04 CA ? GO:0005509 ... Q99PF4 30033219
    96460 5i8d:A (2.69) BS05 CA ? GO:0005509 ... Q99PF4 30033219
    96461 5i8d:A (2.69) BS06 CA ? GO:0005509 ... Q99PF4 30033219
    96462 5i8d:A (2.69) BS07 CA ? GO:0005509 ... Q99PF4 30033219
    96463 5i8e:B (2.655) BS01 ZN N/A N/A N/A 27174988
    96464 5i8e:D (2.655) BS01 ZN N/A N/A N/A 27174988
    96465 5i8g:A (1.41) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92793 27190605
    96466 5i8g:A (1.41) BS02 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92793 27190605
    96467 5i8g:A (1.41) BS03 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92793 27190605
    96468 5i8m:A (2.13) BS02 CA ? GO:0030246 ... Q9HYN5 29147502
    96469 5i8m:A (2.13) BS03 CA ? GO:0030246 ... Q9HYN5 29147502
    96470 5i8m:B (2.13) BS02 CA ? GO:0030246 ... Q9HYN5 29147502
    96471 5i8m:B (2.13) BS03 CA ? GO:0030246 ... Q9HYN5 29147502
    96472 5i8m:C (2.13) BS02 CA ? GO:0030246 ... Q9HYN5 29147502
    96473 5i8m:C (2.13) BS04 CA ? GO:0030246 ... Q9HYN5 29147502
    96474 5i8m:D (2.13) BS01 CA ? GO:0030246 ... Q9HYN5 29147502
    96475 5i8m:D (2.13) BS03 CA ? GO:0030246 ... Q9HYN5 29147502
    96476 5i8q:A (4.2) BS02 MG 3.6.4.13 GO:0000390 ... P53131 28416566
    96477 5i8q:B (4.2) BS02 MG 3.6.4.13 GO:0000390 ... P53131 28416566
    96478 5i8r:A (3.646) BS01 ZN 3.1.4.12
    3.1.4.3
    GO:0001778 ... P17405 27725636
    96479 5i8r:A (3.646) BS02 ZN 3.1.4.12
    3.1.4.3
    GO:0001778 ... P17405 27725636
    96480 5i8r:B (3.646) BS01 ZN 3.1.4.12
    3.1.4.3
    GO:0001778 ... P17405 27725636
    96481 5i8r:B (3.646) BS02 ZN 3.1.4.12
    3.1.4.3
    GO:0001778 ... P17405 27725636
    96482 5i8r:C (3.646) BS01 ZN 3.1.4.12
    3.1.4.3
    GO:0001778 ... P17405 27725636
    96483 5i8r:C (3.646) BS02 ZN 3.1.4.12
    3.1.4.3
    GO:0001778 ... P17405 27725636
    96484 5i8s:A (1.89) BS01 NI 1.13.11.53
    1.13.11.54
    GO:0005506 ... Q99JT9 26858196
    96485 5i8t:A (1.751) BS01 NI 1.13.11.53
    1.13.11.54
    GO:0005506 ... Q99JT9 26858196
    96486 5i8x:A (1.89) BS02 CA ? GO:0030246 ... Q9HYN5 29147502
    96487 5i8x:A (1.89) BS03 CA ? GO:0030246 ... Q9HYN5 29147502
    96488 5i8x:B (1.89) BS01 CA ? GO:0030246 ... Q9HYN5 29147502
    96489 5i8x:B (1.89) BS02 CA ? GO:0030246 ... Q9HYN5 29147502
    96490 5i8x:C (1.89) BS01 CA ? GO:0030246 ... Q9HYN5 29147502
    96491 5i8x:C (1.89) BS03 CA ? GO:0030246 ... Q9HYN5 29147502
    96492 5i8x:D (1.89) BS01 CA ? GO:0030246 ... Q9HYN5 29147502
    96493 5i8x:D (1.89) BS03 CA ? GO:0030246 ... Q9HYN5 29147502
    96494 5i8y:A (1.942) BS01 CO 1.13.11.53
    1.13.11.54
    GO:0005506 ... Q99JT9 26858196
    96495 5i91:A (1.76) BS01 NI 1.13.11.53
    1.13.11.54
    GO:0005506 ... Q99JT9 26858196
    96496 5i93:A (2.236) BS01 NI 1.13.11.53
    1.13.11.54
    GO:0005506 ... Q99JT9 26858196
    96497 5i96:A (1.55) BS01 CA 1.1.1.42 GO:0000287 ... P48735 28193778
    96498 5i96:B (1.55) BS01 CA 1.1.1.42 GO:0000287 ... P48735 28193778
    96499 5i9e:D (2.8) BS01 MG 3.6.4.- GO:0005524 ... P60011 27457955
    96500 5i9o:A (1.95) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    96501 5i9o:B (1.95) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    96502 5i9p:A (1.85) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    96503 5iaa:A (1.85) BS01 ZN ? GO:0008641 ... Q9GZZ9 27653677
    96504 5iaa:B (1.85) BS01 ZN ? GO:0008641 ... Q9GZZ9 27653677
    96505 5iav:A (1.7) BS01 CO ? GO:0003674 ... A0A4Y1WAP5 27129244
    96506 5iav:B (1.7) BS01 CO ? GO:0003674 ... A0A4Y1WAP5 27129244
    96507 5iax:A (2.1) BS01 CO ? GO:0003674 ... A0A4Y1WAP5 27129244
    96508 5iax:B (2.1) BS01 CO ? GO:0003674 ... A0A4Y1WAP5 27129244
    96509 5ib3:A (1.91) BS02 CU ? N/A P01889 31296658
    96510 5ib5:A (2.49) BS02 CU ? N/A P01889 31296658
    96511 5ib5:A (2.49) BS03 CU ? N/A P01889 31296658
    96512 5ib5:D (2.49) BS02 CU ? N/A P01889 31296658
    96513 5ib7:19 (2.99) BS03 MG ? GO:0002181 ... P60405 27174928
    96514 5ib7:19 (2.99) BS04 MG ? GO:0002181 ... P60405 27174928
    96515 5ib7:21 (2.99) BS02 MG ? GO:0003735 ... Q5SHN8 27174928
    96516 5ib7:2A (2.99) BS02 MG ? GO:0003735 ... P80376 27174928
    96517 5ib7:31 (2.99) BS02 MG ? GO:0003735 ... Q5SHN9 27174928
    96518 5ib7:39 (2.99) BS02 MG ? GO:0003735 ... Q5SHN9 27174928
    96519 5ib7:39 (2.99) BS03 MG ? GO:0003735 ... Q5SHN9 27174928
    96520 5ib7:3I (2.99) BS02 MG ? GO:0000049 ... Q5SHN3 27174928
    96521 5ib7:41 (2.99) BS03 MG ? GO:0000049 ... Q5SHQ0 27174928
    96522 5ib7:42 (2.99) BS03 MG ? GO:0003723 ... Q5SHQ5 27174928
    96523 5ib7:45 (2.99) BS04 MG ? GO:0000049 ... P60489 27174928
    96524 5ib7:5I (2.99) BS02 MG N/A GO:0003735 ... N/A 27174928
    96525 5ib7:5I (2.99) BS03 ZN N/A GO:0003735 ... N/A 27174928
    96526 5ib7:B5 (2.99) BS02 MG ? GO:0000027 ... Q5SHP0 27174928
    96527 5ib7:C5 (2.99) BS02 MG ? GO:0003723 ... Q5SHP9 27174928
    96528 5ib7:D8 (2.99) BS02 MG ? GO:0003723 ... P60492 27174928
    96529 5ib8:11 (3.13) BS02 MG ? GO:0002181 ... P60405 27174928
    96530 5ib8:19 (3.13) BS02 MG ? GO:0002181 ... P60405 27174928
    96531 5ib8:21 (3.13) BS02 MG ? GO:0003735 ... Q5SHN8 27174928
    96532 5ib8:2A (3.13) BS02 MG ? GO:0003735 ... P80376 27174928
    96533 5ib8:2I (3.13) BS02 MG ? GO:0003735 ... P80376 27174928
    96534 5ib8:31 (3.13) BS02 MG ? GO:0003735 ... Q5SHN9 27174928
    96535 5ib8:39 (3.13) BS02 MG ? GO:0003735 ... Q5SHN9 27174928
    96536 5ib8:39 (3.13) BS03 MG ? GO:0003735 ... Q5SHN9 27174928
    96537 5ib8:3I (3.13) BS02 MG ? GO:0000049 ... Q5SHN3 27174928
    96538 5ib8:41 (3.13) BS03 MG ? GO:0000049 ... Q5SHQ0 27174928
    96539 5ib8:42 (3.13) BS03 MG ? GO:0003723 ... Q5SHQ5 27174928
    96540 5ib8:45 (3.13) BS04 MG ? GO:0000049 ... P60489 27174928
    96541 5ib8:5I (3.13) BS02 ZN N/A GO:0003735 ... N/A 27174928
    96542 5ib8:B5 (3.13) BS02 MG ? GO:0000027 ... Q5SHP0 27174928
    96543 5ib9:A (1.4) BS01 ZN ? GO:0004177 ... A2V759 N/A
    96544 5ib9:A (1.4) BS02 ZN ? GO:0004177 ... A2V759 N/A
    96545 5ib9:A (1.4) BS03 ZN ? GO:0004177 ... A2V759 N/A
    96546 5ib9:A (1.4) BS04 ZN ? GO:0004177 ... A2V759 N/A
    96547 5ibb:11 (2.96) BS03 MG ? GO:0002181 ... P60405 27174928
    96548 5ibb:19 (2.96) BS03 MG ? GO:0002181 ... P60405 27174928
    96549 5ibb:19 (2.96) BS04 MG ? GO:0002181 ... P60405 27174928
    96550 5ibb:21 (2.96) BS02 MG ? GO:0003735 ... Q5SHN8 27174928
    96551 5ibb:29 (2.96) BS02 MG ? GO:0003735 ... Q5SHN8 27174928
    96552 5ibb:2A (2.96) BS02 MG ? GO:0003735 ... P80376 27174928
    96553 5ibb:2I (2.96) BS02 MG ? GO:0003735 ... P80376 27174928
    96554 5ibb:31 (2.96) BS02 MG ? GO:0003735 ... Q5SHN9 27174928
    96555 5ibb:39 (2.96) BS02 MG ? GO:0003735 ... Q5SHN9 27174928
    96556 5ibb:39 (2.96) BS03 MG ? GO:0003735 ... Q5SHN9 27174928
    96557 5ibb:3A (2.96) BS02 MG ? GO:0000049 ... Q5SHN3 27174928
    96558 5ibb:3I (2.96) BS02 MG ? GO:0000049 ... Q5SHN3 27174928
    96559 5ibb:41 (2.96) BS04 MG ? GO:0000049 ... Q5SHQ0 27174928
    96560 5ibb:42 (2.96) BS03 MG ? GO:0003723 ... Q5SHQ5 27174928
    96561 5ibb:5A (2.96) BS02 ZN N/A GO:0003735 ... N/A 27174928
    96562 5ibb:5E (2.96) BS02 MG ? GO:0003735 ... Q5SLP8 27174928
    96563 5ibb:5I (2.96) BS02 MG N/A GO:0003735 ... N/A 27174928
    96564 5ibb:5I (2.96) BS03 ZN N/A GO:0003735 ... N/A 27174928
    96565 5ibb:88 (2.96) BS04 MG ? GO:0000049 ... P60489 27174928
    96566 5ibb:C5 (2.96) BS02 ZN ? GO:0003723 ... Q5SHP9 27174928
    96567 5ibb:D8 (2.96) BS02 MG ? GO:0003723 ... P60492 27174928
    96568 5ibb:F8 (2.96) BS02 MG ? GO:0000027 ... Q5SHP0 27174928
    96569 5ibb:G8 (2.96) BS02 ZN ? GO:0003723 ... Q5SHP9 27174928
    96570 5ibq:A (1.2) BS02 CA ? GO:0030246 ... Q2JZQ5 N/A
    96571 5ic5:A (1.9) BS01 ZN ? GO:0000160 ... F5Y2U8 26833410
    96572 5ic5:A (1.9) BS02 ZN ? GO:0000160 ... F5Y2U8 26833410
    96573 5ic5:A (1.9) BS03 ZN ? GO:0000160 ... F5Y2U8 26833410
    96574 5ic5:A (1.9) BS04 MG ? GO:0000160 ... F5Y2U8 26833410
    96575 5icn:B (3.3) BS03 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q13547 27109927
    96576 5icu:A (1.46) BS01 CU ? GO:0005507 ... A0A158RFT6 27010565
    96577 5id6:A (2.382) BS02 MG ? GO:0046872 ... A0A182DWE3 27096363
    96578 5ido:A (2.2) BS02 ZN 2.7.7.52 N/A Q8WQX5 27744351
    96579 5idz:A (2.63) BS01 MG 4.2.1.11 GO:0000015 ... P09104 N/A
    96580 5idz:B (2.63) BS01 MG 4.2.1.11 GO:0000015 ... P09104 N/A
    96581 5ie9:A (2.8) BS01 MN ? GO:0046872 ... Q813T0 26920050
    96582 5ie9:B (2.8) BS01 MN ? GO:0046872 ... Q813T0 26920050
    96583 5ie9:C (2.8) BS01 MN ? GO:0046872 ... Q813T0 26920050
    96584 5ie9:D (2.8) BS01 MN ? GO:0046872 ... Q813T0 26920050
    96585 5iea:A (3.258) BS01 ZN 2.3.2.27
    6.1.1.11
    GO:0000166 ... P34945
    Q0PF16
    27253059
    96586 5iea:A (3.258) BS02 ZN 2.3.2.27
    6.1.1.11
    GO:0000166 ... P34945
    Q0PF16
    27253059
    96587 5iea:B (3.258) BS01 ZN 2.3.2.27
    6.1.1.11
    GO:0000166 ... P34945
    Q0PF16
    27253059
    96588 5iea:B (3.258) BS02 ZN 2.3.2.27
    6.1.1.11
    GO:0000166 ... P34945
    Q0PF16
    27253059
    96589 5iea:C (3.258) BS01 ZN 2.3.2.27
    6.1.1.11
    GO:0000166 ... P34945
    Q0PF16
    27253059
    96590 5iea:C (3.258) BS02 ZN 2.3.2.27
    6.1.1.11
    GO:0000166 ... P34945
    Q0PF16
    27253059
    96591 5iea:D (3.258) BS01 ZN 2.3.2.27
    6.1.1.11
    GO:0000166 ... P34945
    Q0PF16
    27253059
    96592 5iea:D (3.258) BS02 ZN 2.3.2.27
    6.1.1.11
    GO:0000166 ... P34945
    Q0PF16
    27253059
    96593 5iea:F (3.258) BS01 ZN 2.3.2.27
    6.1.1.11
    GO:0000166 ... P34945
    Q0PF16
    27253059
    96594 5iea:F (3.258) BS02 ZN 2.3.2.27
    6.1.1.11
    GO:0000166 ... P34945
    Q0PF16
    27253059
    96595 5iea:K (3.258) BS01 ZN 2.3.2.27
    6.1.1.11
    GO:0000166 ... P34945
    Q0PF16
    27253059
    96596 5iea:K (3.258) BS02 ZN 2.3.2.27
    6.1.1.11
    GO:0000166 ... P34945
    Q0PF16
    27253059
    96597 5ied:B (1.81) BS01 CA ? N/A O08795 27462106
    96598 5ied:B (1.81) BS02 CA ? N/A O08795 27462106
    96599 5iee:B (1.92) BS01 CA ? N/A O08795 27462106
    96600 5iee:B (1.92) BS02 CA ? N/A O08795 27462106

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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