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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    96201 5i0t:A (1.37) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    96202 5i0u:A (1.25) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    96203 5i0v:A (1.65) BS01 FE ? GO:0046872 ... A0A0H3PA01 32780051
    96204 5i0v:A (1.65) BS02 CU ? GO:0046872 ... A0A0H3PA01 32780051
    96205 5i0v:B (1.65) BS01 CU ? GO:0046872 ... A0A0H3PA01 32780051
    96206 5i0v:B (1.65) BS02 FE ? GO:0046872 ... A0A0H3PA01 32780051
    96207 5i0w:A (1.55) BS01 CU1 ? GO:0046872 ... A0A0H3PA01 32780051
    96208 5i0w:B (1.55) BS01 CU1 ? GO:0046872 ... A0A0H3PA01 32780051
    96209 5i0w:B (1.55) BS02 FE2 ? GO:0046872 ... A0A0H3PA01 32780051
    96210 5i0x:A (1.5) BS01 CU ? GO:0046872 ... A0A1S4NYE6 32780051
    96211 5i0x:B (1.5) BS01 CU ? GO:0046872 ... A0A1S4NYE6 32780051
    96212 5i0x:B (1.5) BS02 CU ? GO:0046872 ... A0A1S4NYE6 32780051
    96213 5i0y:A (1.4) BS01 CU ? GO:0046872 ... A0A1S4NYE7 32780051
    96214 5i0y:B (1.4) BS01 CU ? GO:0046872 ... A0A1S4NYE7 32780051
    96215 5i10:A (2.0) BS01 MG ? GO:0008168 ... Q9ALM9 N/A
    96216 5i12:A (1.59) BS01 ZN 3.4.24.35 GO:0004222 ... P14780 27356908
    96217 5i12:A (1.59) BS02 ZN 3.4.24.35 GO:0004222 ... P14780 27356908
    96218 5i12:A (1.59) BS03 CA 3.4.24.35 GO:0004222 ... P14780 27356908
    96219 5i12:A (1.59) BS04 CA 3.4.24.35 GO:0004222 ... P14780 27356908
    96220 5i12:A (1.59) BS05 CA 3.4.24.35 GO:0004222 ... P14780 27356908
    96221 5i13:A (2.151) BS01 MN 3.1.-.- GO:0003723 ... P03433 27088785
    96222 5i13:A (2.151) BS02 MN 3.1.-.- GO:0003723 ... P03433 27088785
    96223 5i1r:A (-1.00) BS01 ZN ? N/A P04591 26946052
    96224 5i1r:A (-1.00) BS02 ZN ? N/A P04591 26946052
    96225 5i1t:A (2.6) BS01 ZN ? GO:0030288 ... Q18CL6 27226615
    96226 5i1y:B (1.95) BS01 CO N/A N/A N/A N/A
    96227 5i26:A (1.888) BS01 CU ? GO:0005507 ... P00282 27029516
    96228 5i26:B (1.888) BS01 CU ? GO:0005507 ... P00282 27029516
    96229 5i26:C (1.888) BS01 CU ? GO:0005507 ... P00282 27029516
    96230 5i26:D (1.888) BS01 CU ? GO:0005507 ... P00282 27029516
    96231 5i28:A (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    96232 5i28:B (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    96233 5i28:C (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    96234 5i28:D (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    96235 5i28:E (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    96236 5i28:F (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    96237 5i28:G (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    96238 5i28:H (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    96239 5i28:I (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    96240 5i28:J (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    96241 5i28:K (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    96242 5i28:L (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    96243 5i28:M (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    96244 5i28:N (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    96245 5i28:O (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    96246 5i28:P (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    96247 5i29:A (1.21) BS02 CA 2.3.1.48
    2.7.11.1
    GO:0004402 ... P21675 27219867
    96248 5i2b:A (1.7) BS01 ZN 3.5.1.88 GO:0006412 ... B1FPK4 N/A
    96249 5i2d:D (4.405) BS03 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27284196
    96250 5i2d:D (4.405) BS04 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27284196
    96251 5i2d:D (4.405) BS05 MG 2.7.7.6 GO:0000287 ... Q8RQE8 27284196
    96252 5i2d:O (4.405) BS03 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27284196
    96253 5i2d:O (4.405) BS04 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27284196
    96254 5i2d:O (4.405) BS05 MG 2.7.7.6 GO:0000287 ... Q8RQE8 27284196
    96255 5i2l:A (1.85) BS01 CA ? GO:0005509 ... Q96C19 27974828
    96256 5i2l:A (1.85) BS02 CA ? GO:0005509 ... Q96C19 27974828
    96257 5i2m:C (2.4) BS01 CA ? GO:0016020 ... P0C2X0 16840692
    96258 5i2o:A (1.952) BS01 CA ? GO:0005509 ... Q96C19 27974828
    96259 5i2q:A (1.935) BS01 CA ? GO:0005509 ... Q96C19 27974828
    96260 5i2r:A (2.5) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 26878596
    96261 5i2r:B (2.5) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 26878596
    96262 5i2r:C (2.5) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 26878596
    96263 5i2r:D (2.5) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 26878596
    96264 5i2u:A (2.2) BS01 MG N/A GO:0000272 ... N/A 28008971
    96265 5i2u:B (2.2) BS01 MG N/A GO:0000272 ... N/A 28008971
    96266 5i2z:A (2.3) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96267 5i2z:A (2.3) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96268 5i2z:A (2.3) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96269 5i2z:A (2.3) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96270 5i2z:A (2.3) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96271 5i2z:B (2.3) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96272 5i2z:B (2.3) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96273 5i2z:B (2.3) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96274 5i2z:B (2.3) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96275 5i2z:B (2.3) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96276 5i2z:C (2.3) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96277 5i2z:C (2.3) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96278 5i2z:C (2.3) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96279 5i2z:C (2.3) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96280 5i2z:C (2.3) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96281 5i2z:D (2.3) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96282 5i2z:D (2.3) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96283 5i2z:D (2.3) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96284 5i2z:D (2.3) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96285 5i2z:D (2.3) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96286 5i38:A (2.6) BS01 CU ? GO:0016491 ... B2ZB02 27725765
    96287 5i38:A (2.6) BS02 CU ? GO:0016491 ... B2ZB02 27725765
    96288 5i38:B (2.6) BS01 CU ? GO:0016491 ... B2ZB02 27725765
    96289 5i38:B (2.6) BS02 CU ? GO:0016491 ... B2ZB02 27725765
    96290 5i3a:A (2.2) BS01 ZN ? GO:0016491 ... B2ZB02 27725765
    96291 5i3a:A (2.2) BS02 ZN ? GO:0016491 ... B2ZB02 27725765
    96292 5i3a:B (2.2) BS01 ZN ? GO:0016491 ... B2ZB02 27725765
    96293 5i3a:B (2.2) BS02 ZN ? GO:0016491 ... B2ZB02 27725765
    96294 5i3b:A (2.2) BS01 ZN ? GO:0016491 ... B2ZB02 27725765
    96295 5i3b:A (2.2) BS02 ZN ? GO:0016491 ... B2ZB02 27725765
    96296 5i3b:B (2.2) BS01 ZN ? GO:0016491 ... B2ZB02 27725765
    96297 5i3b:B (2.2) BS02 ZN ? GO:0016491 ... B2ZB02 27725765
    96298 5i3l:A (1.85) BS02 ZN ? N/A Q92784 27402533
    96299 5i3l:A (1.85) BS03 ZN ? N/A Q92784 27402533
    96300 5i3l:A (1.85) BS04 ZN ? N/A Q92784 27402533
    96301 5i3l:A (1.85) BS05 ZN ? N/A Q92784 27402533
    96302 5i3l:B (1.85) BS01 ZN ? N/A Q92784 27402533
    96303 5i3l:B (1.85) BS02 ZN ? N/A Q92784 27402533
    96304 5i3l:B (1.85) BS03 ZN ? N/A Q92784 27402533
    96305 5i3l:B (1.85) BS04 ZN ? N/A Q92784 27402533
    96306 5i3m:A (2.17) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96307 5i3m:A (2.17) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96308 5i3m:A (2.17) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96309 5i3m:A (2.17) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96310 5i3m:A (2.17) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96311 5i3m:B (2.17) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96312 5i3m:B (2.17) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96313 5i3m:B (2.17) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96314 5i3m:B (2.17) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96315 5i3m:B (2.17) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96316 5i3m:C (2.17) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96317 5i3m:C (2.17) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96318 5i3m:C (2.17) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96319 5i3m:C (2.17) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96320 5i3m:C (2.17) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96321 5i3m:D (2.17) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96322 5i3m:D (2.17) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96323 5i3m:D (2.17) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96324 5i3m:D (2.17) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96325 5i3m:D (2.17) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96326 5i3p:A (2.45) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003968 ... Q6YMS4 27500641
    96327 5i3p:A (2.45) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003968 ... Q6YMS4 27500641
    96328 5i3q:A (1.88) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003968 ... Q6YMS4 27500641
    96329 5i3q:A (1.88) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003968 ... Q6YMS4 27500641
    96330 5i3u:A (3.0) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 27192549
    96331 5i3u:C (3.0) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 27192549
    96332 5i42:A (3.3) BS02 CA 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 27192549
    96333 5i42:C (3.3) BS02 CA 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 27192549
    96334 5i43:A (1.95) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96335 5i43:A (1.95) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96336 5i43:A (1.95) BS03 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96337 5i43:A (1.95) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96338 5i43:A (1.95) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96339 5i43:B (1.95) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96340 5i43:B (1.95) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96341 5i43:B (1.95) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96342 5i43:B (1.95) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96343 5i43:B (1.95) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96344 5i43:C (1.95) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96345 5i43:C (1.95) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96346 5i43:C (1.95) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96347 5i43:C (1.95) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96348 5i43:C (1.95) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96349 5i43:D (1.95) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96350 5i43:D (1.95) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96351 5i43:D (1.95) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96352 5i43:D (1.95) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96353 5i43:D (1.95) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96354 5i46:H (2.06) BS02 CA 3.4.21.21 GO:0004252 ... P08709 27015008
    96355 5i49:A (1.8) BS01 ZN 2.7.7.52 N/A Q8WQX5 27744351
    96356 5i4e:A (2.25) BS02 MG ? GO:0003774 ... P05095
    Q7Z406
    29256864
    96357 5i4j:A (2.394) BS01 ZN ? GO:0008199 ... B2J981 N/A
    96358 5i4j:B (2.394) BS01 ZN ? GO:0008199 ... B2J981 N/A
    96359 5i4j:C (2.394) BS01 ZN ? GO:0008199 ... B2J981 N/A
    96360 5i4j:D (2.394) BS01 ZN ? GO:0008199 ... B2J981 N/A
    96361 5i4k:A (1.79) BS01 MN ? GO:0005886 ... Q8Y653 N/A
    96362 5i4k:A (1.79) BS02 MN ? GO:0005886 ... Q8Y653 N/A
    96363 5i4l:C8 (3.1) BS02 MG ? GO:0000054 ... P0CX55 27296282
    96364 5i4l:D6 (3.1) BS02 ZN ? GO:0003735 ... P39939 27296282
    96365 5i4l:D7 (3.1) BS02 ZN ? GO:0000028 ... P35997 27296282
    96366 5i4l:D9 (3.1) BS02 ZN ? GO:0002181 ... P41057 27296282
    96367 5i4l:L2 (3.1) BS03 MG ? GO:0002181 ... P0CX45 27296282
    96368 5i4l:M0 (3.1) BS03 MG ? GO:0000027 ... P41805 27296282
    96369 5i4l:M7 (3.1) BS03 MG ? GO:0000448 ... P05740 27296282
    96370 5i4l:M9 (3.1) BS03 MG ? GO:0002181 ... P0CX82 27296282
    96371 5i4l:O4 (3.1) BS02 MG ? GO:0002181 ... P87262 27296282
    96372 5i4l:O7 (3.1) BS05 ZN ? GO:0000448 ... P49166 27296282
    96373 5i4l:Q0 (3.1) BS02 ZN ? GO:0003735 ... P0CH08 27296282
    96374 5i4l:Q2 (3.1) BS02 ZN ? GO:0002181 ... P0CX27 27296282
    96375 5i4l:Q3 (3.1) BS02 ZN ? GO:0002181 ... P0CX25 27296282
    96376 5i4l:c9 (3.1) BS02 MG ? GO:0000028 ... P07280 27296282
    96377 5i4l:d6 (3.1) BS02 ZN ? GO:0003735 ... P39939 27296282
    96378 5i4l:d9 (3.1) BS02 ZN ? GO:0002181 ... P41057 27296282
    96379 5i4l:e1 (3.1) BS02 ZN ? GO:0003735 ... P05759 27296282
    96380 5i4l:m5 (3.1) BS04 MG ? GO:0002181 ... P05748 27296282
    96381 5i4l:m7 (3.1) BS03 MG ? GO:0000448 ... P05740 27296282
    96382 5i4l:n1 (3.1) BS03 MG ? GO:0002181 ... Q02753 27296282
    96383 5i4l:o4 (3.1) BS02 MG ? GO:0002181 ... P87262 27296282
    96384 5i4l:o7 (3.1) BS04 ZN ? GO:0000448 ... P49166 27296282
    96385 5i4l:q0 (3.1) BS02 ZN ? GO:0003735 ... P0CH08 27296282
    96386 5i4l:q3 (3.1) BS03 ZN ? GO:0002181 ... P0CX25 27296282
    96387 5i4l:sM (3.1) BS03 MG ? N/A P39015 27296282
    96388 5i4m:A (1.8) BS01 ZN 3.5.1.87 GO:0016787 ... A4JQA0 N/A
    96389 5i4m:A (1.8) BS02 ZN 3.5.1.87 GO:0016787 ... A4JQA0 N/A
    96390 5i4m:B (1.8) BS01 ZN 3.5.1.87 GO:0016787 ... A4JQA0 N/A
    96391 5i4m:B (1.8) BS02 ZN 3.5.1.87 GO:0016787 ... A4JQA0 N/A
    96392 5i4o:A (2.05) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96393 5i4o:A (2.05) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96394 5i4o:A (2.05) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96395 5i4o:A (2.05) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96396 5i4o:A (2.05) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96397 5i4o:B (2.05) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96398 5i4o:B (2.05) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96399 5i4o:B (2.05) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96400 5i4o:B (2.05) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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