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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    96001 5hu3:A (1.885) BS03 MG 2.7.11.17 GO:0004672 ... Q00168 30381148
    96002 5huc:A (2.45) BS01 MN 2.5.1.54 GO:0003849 ... Q8NNL5 29178787
    96003 5hud:A (2.15) BS01 MN 2.5.1.54 GO:0003849 ... Q8NNL5 29178787
    96004 5hud:B (2.15) BS01 MN 2.5.1.54 GO:0003849 ... Q8NNL5 29178787
    96005 5hud:C (2.15) BS01 MN 2.5.1.54 GO:0003849 ... Q8NNL5 29178787
    96006 5hud:D (2.15) BS01 MN 2.5.1.54 GO:0003849 ... Q8NNL5 29178787
    96007 5hue:A (2.65) BS01 MN 2.5.1.54 GO:0003849 ... Q8NNL5 29178787
    96008 5hug:A (1.85) BS01 CA 3.2.1.18 GO:0004308 ... A0A0C5BL75 27053557
    96009 5hug:A (1.85) BS02 CA 3.2.1.18 GO:0004308 ... A0A0C5BL75 27053557
    96010 5huh:A (2.5) BS01 MG 6.3.1.5 GO:0003952 ... A0A0H3BZ89 28618168
    96011 5huh:B (2.5) BS01 MG 6.3.1.5 GO:0003952 ... A0A0H3BZ89 28618168
    96012 5huk:A (2.45) BS03 CA 3.2.1.18 GO:0004308 ... A0A0C4WXC5 27053557
    96013 5huk:B (2.45) BS03 CA 3.2.1.18 GO:0004308 ... A0A0C4WXC5 27053557
    96014 5huk:C (2.45) BS01 CA 3.2.1.18 GO:0004308 ... A0A0C4WXC5 27053557
    96015 5huk:D (2.45) BS02 CA 3.2.1.18 GO:0004308 ... A0A0C4WXC5 27053557
    96016 5hum:A (1.6) BS01 CA 3.2.1.18 GO:0004308 ... A0A0B4N5Z5 27053557
    96017 5hum:B (1.6) BS01 CA 3.2.1.18 GO:0004308 ... A0A0B4N5Z5 27053557
    96018 5hum:C (1.6) BS01 CA 3.2.1.18 GO:0004308 ... A0A0B4N5Z5 27053557
    96019 5hum:D (1.6) BS01 CA 3.2.1.18 GO:0004308 ... A0A0B4N5Z5 27053557
    96020 5hun:A (2.3) BS01 CA 3.2.1.18 GO:0004308 ... A0A0C4WVM3 27053557
    96021 5hur:A (1.5) BS01 CA 3.1.31.1 N/A P00644 N/A
    96022 5hv0:A (1.63) BS01 CD ? GO:0003674 ... A0A4Y1WAP5 27139630
    96023 5hv0:A (1.63) BS02 CD ? GO:0003674 ... A0A4Y1WAP5 27139630
    96024 5hv0:B (1.63) BS01 CD ? GO:0003674 ... A0A4Y1WAP5 27139630
    96025 5hv0:B (1.63) BS02 CD ? GO:0003674 ... A0A4Y1WAP5 27139630
    96026 5hv1:A (3.103) BS03 MG N/A GO:0005524 ... N/A 27001859
    96027 5hv3:A (3.118) BS02 MG N/A GO:0005524 ... N/A 27001859
    96028 5hv4:A (2.35) BS01 CD ? GO:0003674 ... A0A4Y1WAP5 27139630
    96029 5hv4:A (2.35) BS02 CD ? GO:0003674 ... A0A4Y1WAP5 27139630
    96030 5hva:A (2.1) BS01 MG ? GO:0046872 ... Q9RS96 27739259
    96031 5hva:B (2.1) BS01 MG ? GO:0046872 ... Q9RS96 27739259
    96032 5hva:C (2.1) BS02 MG ? GO:0046872 ... Q9RS96 27739259
    96033 5hva:C (2.1) BS03 MG ? GO:0046872 ... Q9RS96 27739259
    96034 5hva:D (2.1) BS02 MG ? GO:0046872 ... Q9RS96 27739259
    96035 5hva:D (2.1) BS03 MG ? GO:0046872 ... Q9RS96 27739259
    96036 5hvf:A (2.85) BS01 ZN 3.4.17.20 GO:0003331 ... Q96IY4 27279497
    96037 5hvg:A (3.05) BS01 ZN 3.4.17.20 GO:0003331 ... Q96IY4 27279497
    96038 5hvg:C (3.05) BS01 ZN 3.4.17.20 GO:0003331 ... Q96IY4 27279497
    96039 5hvh:A (3.0) BS01 ZN 3.4.17.20 GO:0003331 ... Q96IY4 27279497
    96040 5hvq:C (2.923) BS01 ZN 2.3.2.27 GO:0006281 ... Q8WV22 26910052
    96041 5hvq:C (2.923) BS02 ZN 2.3.2.27 GO:0006281 ... Q8WV22 26910052
    96042 5hvw:A (1.95) BS03 ZN ? N/A P01861 27479095
    96043 5hwa:A (1.35) BS04 ZN 3.2.1.132 GO:0005576 ... P33673 N/A
    96044 5hwa:A (1.35) BS05 ZN 3.2.1.132 GO:0005576 ... P33673 N/A
    96045 5hwe:A (1.71) BS01 MG 3.5.2.1 GO:0006212 ... Q8RSQ2 28235873
    96046 5hwu:A (2.1) BS01 MN ? GO:0046872 ... Q9RS96 27739259
    96047 5hwu:B (2.1) BS02 MN ? GO:0046872 ... Q9RS96 27739259
    96048 5hwu:B (2.1) BS03 MN ? GO:0046872 ... Q9RS96 27739259
    96049 5hwx:A (2.4) BS01 NA ? GO:0005262 ... Q57556 27183196
    96050 5hwx:A (2.4) BS02 NA ? GO:0005262 ... Q57556 27183196
    96051 5hwy:A (2.098) BS01 NA ? GO:0005262 ... Q57556 27183196
    96052 5hwy:A (2.098) BS02 NA ? GO:0005262 ... Q57556 27183196
    96053 5hx1:A (1.799) BS02 MG ? GO:0046872 ... Q9RS96 27739259
    96054 5hx1:B (1.799) BS02 MG ? GO:0046872 ... Q9RS96 27739259
    96055 5hx1:C (1.799) BS02 MG ? GO:0046872 ... Q9RS96 27739259
    96056 5hx1:D (1.799) BS02 MG ? GO:0046872 ... Q9RS96 27739259
    96057 5hx5:A (2.33) BS01 ZN 3.5.4.38 GO:0003824 ... Q8IUX4 27139641
    96058 5hx5:B (2.33) BS01 ZN 3.5.4.38 GO:0003824 ... Q8IUX4 27139641
    96059 5hxb:C (3.6) BS01 ZN ? GO:0005515 ... Q96SW2 27338790
    96060 5hxb:Z (3.6) BS01 ZN ? GO:0005515 ... Q96SW2 27338790
    96061 5hxc:A (2.101) BS01 CA ? GO:0005262 ... Q57556 27183196
    96062 5hxc:A (2.101) BS02 NA ? GO:0005262 ... Q57556 27183196
    96063 5hxc:A (2.101) BS03 NA ? GO:0005262 ... Q57556 27183196
    96064 5hxc:A (2.101) BS04 NA ? GO:0005262 ... Q57556 27183196
    96065 5hxd:A (2.6) BS01 ZN 3.4.17.- GO:0004040 ... P0ACV7 27894248
    96066 5hxd:B (2.6) BS01 ZN 3.4.17.- GO:0004040 ... P0ACV7 27894248
    96067 5hxe:A (2.288) BS01 NA ? GO:0005262 ... Q57556 27183196
    96068 5hxe:A (2.288) BS02 NA ? GO:0005262 ... Q57556 27183196
    96069 5hxe:A (2.288) BS03 NA ? GO:0005262 ... Q57556 27183196
    96070 5hxe:A (2.288) BS04 NA ? GO:0005262 ... Q57556 27183196
    96071 5hxh:A (2.804) BS01 CA ? GO:0005262 ... Q57556 27183196
    96072 5hxh:B (2.804) BS01 CA ? GO:0005262 ... Q57556 27183196
    96073 5hxm:A (1.9) BS04 MG 3.2.1.177 GO:0003824 ... Q8Y4J2 28089449
    96074 5hxm:A (1.9) BS05 CA 3.2.1.177 GO:0003824 ... Q8Y4J2 28089449
    96075 5hxr:A (2.463) BS01 CA ? GO:0005262 ... Q57556 27183196
    96076 5hxr:A (2.463) BS02 CA ? GO:0005262 ... Q57556 27183196
    96077 5hy7:B (2.9) BS01 CA ? GO:0000398 ... G0S5A2 27720643
    96078 5hya:A (1.897) BS01 NA ? GO:0005262 ... Q57556 27183196
    96079 5hya:A (1.897) BS02 NA ? GO:0005262 ... Q57556 27183196
    96080 5hya:A (1.897) BS03 NA ? GO:0005262 ... Q57556 27183196
    96081 5hya:A (1.897) BS04 CA ? GO:0005262 ... Q57556 27183196
    96082 5hyg:A (2.03) BS01 FE 1.14.99.67 GO:0016491 ... F2RB83 27229511
    96083 5hyg:A (2.03) BS02 FE 1.14.99.67 GO:0016491 ... F2RB83 27229511
    96084 5hyh:A (2.03) BS01 FE 1.14.99.67 GO:0016491 ... F2RB83 27229511
    96085 5hyh:A (2.03) BS02 FE 1.14.99.67 GO:0016491 ... F2RB83 27229511
    96086 5hyn:A (2.95) BS03 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96087 5hyn:A (2.95) BS04 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96088 5hyn:A (2.95) BS05 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96089 5hyn:A (2.95) BS06 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96090 5hyn:A (2.95) BS07 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96091 5hyn:A (2.95) BS08 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96092 5hyn:A (2.95) BS09 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96093 5hyn:A (2.95) BS10 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96094 5hyn:F (2.95) BS03 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96095 5hyn:F (2.95) BS04 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96096 5hyn:F (2.95) BS05 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96097 5hyn:F (2.95) BS06 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96098 5hyn:F (2.95) BS07 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96099 5hyn:F (2.95) BS08 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96100 5hyn:F (2.95) BS09 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96101 5hyn:F (2.95) BS10 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96102 5hyn:K (2.95) BS02 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96103 5hyn:K (2.95) BS03 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96104 5hyn:K (2.95) BS04 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96105 5hyn:K (2.95) BS05 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96106 5hyn:K (2.95) BS06 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96107 5hyn:K (2.95) BS07 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96108 5hyn:K (2.95) BS08 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96109 5hyn:K (2.95) BS09 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96110 5hyn:Q (2.95) BS02 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96111 5hyn:Q (2.95) BS03 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96112 5hyn:Q (2.95) BS04 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96113 5hyn:Q (2.95) BS05 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96114 5hyn:Q (2.95) BS06 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96115 5hyn:Q (2.95) BS07 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96116 5hyn:Q (2.95) BS08 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96117 5hyn:Q (2.95) BS09 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    96118 5hyv:A (1.031) BS02 CA 2.2.1.1 GO:0003824 ... P34736 27578891
    96119 5hzd:A (1.6) BS01 ZN 2.7.7.52 N/A Q8WQX5 27744351
    96120 5hze:A (2.4) BS02 MG 2.7.12.2 GO:0004672 ... Q02750 N/A
    96121 5hzf:A (1.55) BS01 MG ? N/A P02745
    P02746
    P02747    		 26973654
    96122 5hzh:A (2.6) BS03 MG 2.7.11.1
    3.6.5.2    		 GO:0003924 ... O49003
    P63000    		 27980211
    96123 5hzl:B (2.75) BS01 CA ? GO:0046872 ... Q8Y4J3 N/A
    96124 5hzl:B (2.75) BS02 CA ? GO:0046872 ... Q8Y4J3 N/A
    96125 5hzl:B (2.75) BS03 CA ? GO:0046872 ... Q8Y4J3 N/A
    96126 5hzl:B (2.75) BS04 CA ? GO:0046872 ... Q8Y4J3 N/A
    96127 5hzl:B (2.75) BS05 CA ? GO:0046872 ... Q8Y4J3 N/A
    96128 5hzs:A (2.17) BS01 CO ? GO:0006091 ... Q5TLG6 27433793
    96129 5hzs:B (2.17) BS01 CO ? GO:0006091 ... Q5TLG6 27433793
    96130 5hzs:C (2.17) BS01 CO ? GO:0006091 ... Q5TLG6 27433793
    96131 5hzs:D (2.17) BS01 CO ? GO:0006091 ... Q5TLG6 27433793
    96132 5hzs:E (2.17) BS01 CO ? GO:0006091 ... Q5TLG6 27433793
    96133 5hzs:F (2.17) BS01 CO ? GO:0006091 ... Q5TLG6 27433793
    96134 5hzs:G (2.17) BS01 CO ? GO:0006091 ... Q5TLG6 27433793
    96135 5hzs:H (2.17) BS01 CO ? GO:0006091 ... Q5TLG6 27433793
    96136 5hzs:I (2.17) BS01 CO ? GO:0006091 ... Q5TLG6 27433793
    96137 5hzs:J (2.17) BS01 CO ? GO:0006091 ... Q5TLG6 27433793
    96138 5hzs:K (2.17) BS01 CO ? GO:0006091 ... Q5TLG6 27433793
    96139 5hzs:L (2.17) BS01 CO ? GO:0006091 ... Q5TLG6 27433793
    96140 5hzt:A (2.84) BS01 CU ? GO:0006091 ... Q5TLG6 27433793
    96141 5hzt:B (2.84) BS01 CU ? GO:0006091 ... Q5TLG6 27433793
    96142 5hzt:C (2.84) BS01 CU ? GO:0006091 ... Q5TLG6 27433793
    96143 5hzt:D (2.84) BS01 CU ? GO:0006091 ... Q5TLG6 27433793
    96144 5hzt:E (2.84) BS01 CU ? GO:0006091 ... Q5TLG6 27433793
    96145 5hzt:F (2.84) BS01 CU ? GO:0006091 ... Q5TLG6 27433793
    96146 5hzt:G (2.84) BS01 CU ? GO:0006091 ... Q5TLG6 27433793
    96147 5hzt:H (2.84) BS01 CU ? GO:0006091 ... Q5TLG6 27433793
    96148 5hzt:I (2.84) BS01 CU ? GO:0006091 ... Q5TLG6 27433793
    96149 5hzt:J (2.84) BS01 CU ? GO:0006091 ... Q5TLG6 27433793
    96150 5hzt:K (2.84) BS01 CU ? GO:0006091 ... Q5TLG6 27433793
    96151 5hzt:L (2.84) BS01 CU ? GO:0006091 ... Q5TLG6 27433793
    96152 5hzz:A (1.801) BS01 MN ? GO:0046872 ... Q9RS96 27739259
    96153 5hzz:B (1.801) BS01 MN ? GO:0046872 ... Q9RS96 27739259
    96154 5hzz:C (1.801) BS02 MN ? GO:0046872 ... Q9RS96 27739259
    96155 5hzz:C (1.801) BS03 MN ? GO:0046872 ... Q9RS96 27739259
    96156 5hzz:D (1.801) BS02 MN ? GO:0046872 ... Q9RS96 27739259
    96157 5hzz:D (1.801) BS03 MN ? GO:0046872 ... Q9RS96 27739259
    96158 5i00:A (1.49) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    96159 5i01:A (2.37) BS01 ZN 5.3.1.28 GO:0005737 ... Q5F5E3 28063198
    96160 5i01:B (2.37) BS01 ZN 5.3.1.28 GO:0005737 ... Q5F5E3 28063198
    96161 5i01:C (2.37) BS01 ZN 5.3.1.28 GO:0005737 ... Q5F5E3 28063198
    96162 5i01:D (2.37) BS01 ZN 5.3.1.28 GO:0005737 ... Q5F5E3 28063198
    96163 5i02:A (1.25) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    96164 5i03:A (1.73) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    96165 5i06:A (1.36) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    96166 5i07:A (1.89) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    96167 5i07:B (1.89) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    96168 5i09:A (1.44) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    96169 5i0d:A (1.77) BS10 MG ? GO:0003824 ... Q8Y4J2 28089449
    96170 5i0d:A (1.77) BS11 CA ? GO:0003824 ... Q8Y4J2 28089449
    96171 5i0d:B (1.77) BS11 MG ? GO:0003824 ... Q8Y4J2 28089449
    96172 5i0d:B (1.77) BS12 CA ? GO:0003824 ... Q8Y4J2 28089449
    96173 5i0f:B (1.85) BS05 CA N/A GO:0003824 ... N/A 28089449
    96174 5i0f:B (1.85) BS06 CA N/A GO:0003824 ... N/A 28089449
    96175 5i0f:B (1.85) BS07 CA N/A GO:0003824 ... N/A 28089449
    96176 5i0h:A (1.8) BS02 MG ? GO:0003774 ... Q9HD67 27580874
    96177 5i0h:B (1.8) BS02 MG ? GO:0003774 ... Q9HD67 27580874
    96178 5i0i:A (3.15) BS01 MG ? GO:0003774 ... Q9HD67 27580874
    96179 5i0i:B (3.15) BS01 MG ? GO:0003774 ... Q9HD67 27580874
    96180 5i0l:A (2.45) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96181 5i0l:A (2.45) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96182 5i0l:A (2.45) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96183 5i0l:A (2.45) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96184 5i0l:A (2.45) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96185 5i0l:B (2.45) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96186 5i0l:B (2.45) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    96187 5i0l:B (2.45) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96188 5i0l:B (2.45) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96189 5i0l:B (2.45) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    96190 5i0n:A (2.28) BS03 CA 2.7.1.67
    3.2.1.17    		 GO:0003796 ... D9IEF7
    Q9BTU6    		 N/A
    96191 5i0p:A (2.5) BS01 ZN ? GO:0016787 ... B1YNR3 N/A
    96192 5i0p:A (2.5) BS02 ZN ? GO:0016787 ... B1YNR3 N/A
    96193 5i0p:B (2.5) BS01 ZN ? GO:0016787 ... B1YNR3 N/A
    96194 5i0p:B (2.5) BS02 ZN ? GO:0016787 ... B1YNR3 N/A
    96195 5i0p:C (2.5) BS01 ZN ? GO:0016787 ... B1YNR3 N/A
    96196 5i0p:C (2.5) BS02 ZN ? GO:0016787 ... B1YNR3 N/A
    96197 5i0p:D (2.5) BS01 ZN ? GO:0016787 ... B1YNR3 N/A
    96198 5i0p:D (2.5) BS02 ZN ? GO:0016787 ... B1YNR3 N/A
    96199 5i0r:A (1.35) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    96200 5i0s:A (1.3) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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