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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    95601 5hd1:2D (2.7) BS05 MG ? GO:0002181 ... P60405 26809677
    95602 5hd1:2D (2.7) BS06 MG ? GO:0002181 ... P60405 26809677
    95603 5hd1:2E (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 26809677
    95604 5hd1:2E (2.7) BS03 MG ? GO:0003735 ... Q5SHN8 26809677
    95605 5hd1:2F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 26809677
    95606 5hd1:2F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 26809677
    95607 5hd1:2F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 26809677
    95608 5hd1:2O (2.7) BS03 MG ? GO:0003735 ... Q5SHP8 26809677
    95609 5hd1:2Q (2.7) BS03 MG ? GO:0000049 ... P60489 26809677
    95610 5hd1:2Q (2.7) BS04 MG ? GO:0000049 ... P60489 26809677
    95611 5hd1:2U (2.7) BS02 MG ? GO:0000027 ... P60491 26809677
    95612 5hd1:2V (2.7) BS02 MG ? GO:0003723 ... P60492 26809677
    95613 5hd1:2V (2.7) BS03 MG ? GO:0003723 ... P60492 26809677
    95614 5hd1:2W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 26809677
    95615 5hd1:2Y (2.7) BS02 ZN ? GO:0003723 ... Q5SHP9 26809677
    95616 5hd1:2e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 26809677
    95617 5hd1:2f (2.7) BS02 MG ? GO:0003735 ... Q5SLP8 26809677
    95618 5hd1:2l (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 26809677
    95619 5hd1:2l (2.7) BS03 MG ? GO:0000049 ... Q5SHN3 26809677
    95620 5hd1:2l (2.7) BS04 MG ? GO:0000049 ... Q5SHN3 26809677
    95621 5hd1:2n (2.7) BS02 ZN N/A GO:0003735 ... N/A 26809677
    95622 5hd1:2t (2.7) BS02 MG ? GO:0003723 ... P80380 26809677
    95623 5hda:A (2.3899) BS02 ZN ? GO:0003714 ... Q15326 26845565
    95624 5hda:A (2.3899) BS03 ZN ? GO:0003714 ... Q15326 26845565
    95625 5hda:C (2.3899) BS02 ZN ? GO:0003714 ... Q15326 26845565
    95626 5hda:C (2.3899) BS03 ZN ? GO:0003714 ... Q15326 26845565
    95627 5hdb:A (2.7012) BS01 CA ? GO:0007155 ... P08514 26631735
    95628 5hdb:A (2.7012) BS02 CA ? GO:0007155 ... P08514 26631735
    95629 5hdb:A (2.7012) BS03 CA ? GO:0007155 ... P08514 26631735
    95630 5hdb:A (2.7012) BS04 CA ? GO:0007155 ... P08514 26631735
    95631 5hdb:B (2.7012) BS01 MG ? N/A P05106 26631735
    95632 5hdb:B (2.7012) BS02 CA ? N/A P05106 26631735
    95633 5hdb:C (2.7012) BS01 CA ? GO:0007155 ... P08514 26631735
    95634 5hdb:C (2.7012) BS02 CA ? GO:0007155 ... P08514 26631735
    95635 5hdb:C (2.7012) BS03 CA ? GO:0007155 ... P08514 26631735
    95636 5hdb:C (2.7012) BS04 CA ? GO:0007155 ... P08514 26631735
    95637 5hdb:D (2.7012) BS02 MG ? N/A P05106 26631735
    95638 5hdb:D (2.7012) BS03 CA ? N/A P05106 26631735
    95639 5hdb:D (2.7012) BS04 CA ? N/A P05106 26631735
    95640 5hdq:A (1.83) BS01 FE ? GO:0007155 ... W8TNQ9 27689696
    95641 5he1:A (3.15) BS02 MG 2.7.11.15 GO:0001664 ... P25098 27050625
    95642 5he3:A (2.74) BS01 MG 2.7.11.15 GO:0001664 ... P21146 27050625
    95643 5hee:A (1.41) BS01 ZN ? GO:0008198 ... Q5JHM2 27303894
    95644 5hee:A (1.41) BS02 ZN ? GO:0008198 ... Q5JHM2 27303894
    95645 5hee:B (1.41) BS01 ZN ? GO:0008198 ... Q5JHM2 27303894
    95646 5hee:B (1.41) BS02 ZN ? GO:0008198 ... Q5JHM2 27303894
    95647 5hev:A (3.192) BS01 MG N/A GO:0000160 ... N/A 27670715
    95648 5hev:B (3.192) BS01 MG N/A GO:0000160 ... N/A 27670715
    95649 5hev:C (3.192) BS01 MG N/A GO:0000160 ... N/A 27670715
    95650 5hev:F (3.192) BS01 MG N/A GO:0000160 ... N/A 27670715
    95651 5hez:A (2.66) BS01 ZN 2.7.10.2 GO:0004672 ... O60674 27807284
    95652 5hez:B (2.66) BS03 ZN 2.7.10.2 GO:0004672 ... O60674 27807284
    95653 5hez:C (2.66) BS02 ZN 2.7.10.2 GO:0004672 ... O60674 27807284
    95654 5hgj:A (1.399) BS01 CA ? N/A P56199 29440721
    95655 5hgj:B (1.399) BS01 CA ? N/A P56199 29440721
    95656 5hgt:A (1.75) BS01 CA 3.1.31.1 N/A P00644 N/A
    95657 5hgw:A (1.6) BS01 FE 3.5.1.88 GO:0006412 ... B1YSH1 N/A
    95658 5hgw:B (1.6) BS01 FE 3.5.1.88 GO:0006412 ... B1YSH1 N/A
    95659 5hh4:A (2.0) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 29485857
    95660 5hh4:A (2.0) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 29485857
    95661 5hh4:B (2.0) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 29485857
    95662 5hh4:B (2.0) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 29485857
    95663 5hh4:C (2.0) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 29485857
    95664 5hh4:C (2.0) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 29485857
    95665 5hh4:D (2.0) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 29485857
    95666 5hh4:D (2.0) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 29485857
    95667 5hh5:A (1.8) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 29485857
    95668 5hh6:A (1.8) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 29485857
    95669 5hh7:A (1.901) BS02 ZN ? GO:0003682 ... Q9SU24 26876097
    95670 5hh7:A (1.901) BS03 ZN ? GO:0003682 ... Q9SU24 26876097
    95671 5hha:A (1.24) BS01 CA ? GO:0002049 ... Q9I185 N/A
    95672 5hha:B (1.24) BS01 CA ? GO:0002049 ... Q9I185 N/A
    95673 5hht:A (1.5) BS01 CA 2.2.1.1 GO:0000287 ... P27302 27767080
    95674 5hht:B (1.5) BS03 CA 2.2.1.1 GO:0000287 ... P27302 27767080
    95675 5hi0:A (2.602) BS01 CO 4.1.1.2 GO:0005737 ... O34714 27014926
    95676 5hi0:A (2.602) BS02 CO 4.1.1.2 GO:0005737 ... O34714 27014926
    95677 5hi6:A (2.051) BS02 CA 1.5.1.3 GO:0004146 ... A0A3N4BLI0 N/A
    95678 5hi7:A (2.15) BS01 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 27066749
    95679 5hi7:A (2.15) BS02 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 27066749
    95680 5hi7:A (2.15) BS03 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 27066749
    95681 5hi7:A (2.15) BS04 MG 2.1.1.354 GO:0000978 ... Q9H7B4 27066749
    95682 5hia:A (1.773) BS02 MG 2.4.2.8 GO:0000166 ... P00492 29161011
    95683 5hia:B (1.773) BS02 MG 2.4.2.8 GO:0000166 ... P00492 29161011
    95684 5hia:C (1.773) BS02 MG 2.4.2.8 GO:0000166 ... P00492 29161011
    95685 5hia:D (1.773) BS02 MG 2.4.2.8 GO:0000166 ... P00492 29161011
    95686 5hif:A (1.6) BS01 ZN N/A N/A N/A N/A
    95687 5hif:A (1.6) BS02 ZN N/A N/A N/A N/A
    95688 5hif:B (1.6) BS01 ZN N/A N/A N/A N/A
    95689 5hif:B (1.6) BS02 ZN N/A N/A N/A N/A
    95690 5hif:B (1.6) BS03 MG N/A N/A N/A N/A
    95691 5hio:A (1.9) BS01 FE 3.1.2.32 GO:0016787 ... P20581 27082157
    95692 5hio:A (1.9) BS02 FE 3.1.2.32 GO:0016787 ... P20581 27082157
    95693 5hip:A (1.992) BS01 FE 3.1.2.32 GO:0016787 ... P20581 27082157
    95694 5hip:A (1.992) BS02 FE 3.1.2.32 GO:0016787 ... P20581 27082157
    95695 5hiq:A (2.1) BS01 FE 3.1.2.32 GO:0016787 ... P20581 27082157
    95696 5hiq:A (2.1) BS02 FE 3.1.2.32 GO:0016787 ... P20581 27082157
    95697 5his:A (1.77) BS01 FE 3.1.2.32 GO:0016787 ... P20581 27082157
    95698 5his:A (1.77) BS02 FE 3.1.2.32 GO:0016787 ... P20581 27082157
    95699 5hit:A (2.85) BS02 CA ? GO:0005509 ... P62149 27618660
    95700 5hit:A (2.85) BS03 CA ? GO:0005509 ... P62149 27618660
    95701 5hj0:A (2.64) BS01 ZN ? N/A Q9P802 26921242
    95702 5hj0:B (2.64) BS01 ZN ? N/A Q9P802 26921242
    95703 5hj0:C (2.64) BS01 ZN ? N/A Q9P802 26921242
    95704 5hj2:A (2.153) BS01 CA ? N/A P17301 29440721
    95705 5hj2:B (2.153) BS01 CA ? N/A P17301 29440721
    95706 5hj2:C (2.153) BS01 CA ? N/A P17301 29440721
    95707 5hj2:D (2.153) BS01 CA ? N/A P17301 29440721
    95708 5hj2:E (2.153) BS01 CA ? N/A P17301 29440721
    95709 5hj9:A (1.28) BS01 MN 3.5.3.1 GO:0000050 ... Q6TUJ5 27050264
    95710 5hj9:A (1.28) BS02 MN 3.5.3.1 GO:0000050 ... Q6TUJ5 27050264
    95711 5hja:A (1.65) BS01 MN 3.5.3.1 GO:0000050 ... Q6TUJ5 27050264
    95712 5hja:A (1.65) BS02 MN 3.5.3.1 GO:0000050 ... Q6TUJ5 27050264
    95713 5hje:A (1.4) BS02 CA 2.2.1.1 GO:0003824 ... P34736 27578891
    95714 5hjh:A (1.88) BS01 FE ? GO:0008199 ... B2J981 N/A
    95715 5hjh:A (1.88) BS02 FE ? GO:0008199 ... B2J981 N/A
    95716 5hjh:B (1.88) BS01 FE ? GO:0008199 ... B2J981 N/A
    95717 5hjh:B (1.88) BS02 FE ? GO:0008199 ... B2J981 N/A
    95718 5hjh:C (1.88) BS01 FE ? GO:0008199 ... B2J981 N/A
    95719 5hjh:C (1.88) BS02 FE ? GO:0008199 ... B2J981 N/A
    95720 5hjh:D (1.88) BS01 FE ? GO:0008199 ... B2J981 N/A
    95721 5hjh:D (1.88) BS02 FE ? GO:0008199 ... B2J981 N/A
    95722 5hjo:B (2.29) BS01 CA ? N/A O08795 27462106
    95723 5hjo:B (2.29) BS02 CA ? N/A O08795 27462106
    95724 5hjo:D (2.29) BS01 CA ? N/A O08795 27462106
    95725 5hjo:D (2.29) BS02 CA ? N/A O08795 27462106
    95726 5hjr:B (2.4) BS01 CA ? N/A O08795 27462106
    95727 5hjr:B (2.4) BS02 CA ? N/A O08795 27462106
    95728 5hjr:D (2.4) BS01 CA ? N/A O08795 27462106
    95729 5hjr:D (2.4) BS02 CA ? N/A O08795 27462106
    95730 5hjx:A (1.799) BS02 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    95731 5hjx:B (1.799) BS03 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    95732 5hjx:C (1.799) BS02 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    95733 5hjx:D (1.799) BS03 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    95734 5hjx:E (1.799) BS02 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    95735 5hjx:F (1.799) BS03 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    95736 5hjy:A (2.3) BS02 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    95737 5hjy:B (2.3) BS03 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    95738 5hjy:C (2.3) BS02 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    95739 5hjy:D (2.3) BS03 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    95740 5hjy:E (2.3) BS02 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    95741 5hjy:F (2.3) BS03 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    95742 5hk4:A (2.15) BS02 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    95743 5hk4:B (2.15) BS03 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    95744 5hk4:C (2.15) BS02 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    95745 5hk4:D (2.15) BS03 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    95746 5hk4:E (2.15) BS02 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    95747 5hk4:F (2.15) BS03 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    95748 5hkj:A (1.35) BS01 CA ? N/A P02745
    P02746
    P02747    		 26973654
    95749 5hko:A (1.2) BS01 ZN 3.6.3.17 GO:0005886 ... A0QYB3 N/A
    95750 5hko:A (1.2) BS02 ZN 3.6.3.17 GO:0005886 ... A0QYB3 N/A
    95751 5hkx:A (1.85) BS01 ZN 2.3.2.27 GO:0001784 ... P22681 N/A
    95752 5hkx:A (1.85) BS02 ZN 2.3.2.27 GO:0001784 ... P22681 N/A
    95753 5hl3:A (1.4) BS01 CA ? GO:0046872 ... Q8Y4H2 29847585
    95754 5hl3:A (1.4) BS02 CA ? GO:0046872 ... Q8Y4H2 29847585
    95755 5hl3:A (1.4) BS03 CA ? GO:0046872 ... Q8Y4H2 29847585
    95756 5hl3:A (1.4) BS04 CA ? GO:0046872 ... Q8Y4H2 29847585
    95757 5hl3:A (1.4) BS05 CA ? GO:0046872 ... Q8Y4H2 29847585
    95758 5hl4:A (2.2) BS02 FE ? GO:0005506 ... Q92ZP9 26996959
    95759 5hlf:A (2.95) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 26813581
    95760 5hlf:A (2.95) BS04 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 26813581
    95761 5hlf:C (2.95) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 26813581
    95762 5hli:A (2.05) BS01 CU ? GO:0003700 ... Q5HKZ1 28086264
    95763 5hli:B (2.05) BS01 CU ? GO:0003700 ... Q5HKZ1 28086264
    95764 5hln:A (3.1) BS02 MG 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 27128528
    95765 5hln:B (3.1) BS02 MG 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 27128528
    95766 5hlo:A (2.1) BS01 CA ? GO:0002523 ... P05109 27251136
    95767 5hlo:A (2.1) BS02 CA ? GO:0002523 ... P05109 27251136
    95768 5hlo:A (2.1) BS04 ZN ? GO:0002523 ... P05109 27251136
    95769 5hlo:B (2.1) BS01 CA ? GO:0002523 ... P05109 27251136
    95770 5hlo:B (2.1) BS02 CA ? GO:0002523 ... P05109 27251136
    95771 5hlo:B (2.1) BS03 ZN ? GO:0002523 ... P05109 27251136
    95772 5hlo:C (2.1) BS02 ZN ? GO:0002523 ... P05109 27251136
    95773 5hlo:C (2.1) BS03 CA ? GO:0002523 ... P05109 27251136
    95774 5hlo:C (2.1) BS04 CA ? GO:0002523 ... P05109 27251136
    95775 5hlo:C (2.1) BS05 ZN ? GO:0002523 ... P05109 27251136
    95776 5hlo:D (2.1) BS01 ZN ? GO:0002523 ... P05109 27251136
    95777 5hlo:D (2.1) BS03 CA ? GO:0002523 ... P05109 27251136
    95778 5hlo:D (2.1) BS04 CA ? GO:0002523 ... P05109 27251136
    95779 5hlo:D (2.1) BS05 ZN ? GO:0002523 ... P05109 27251136
    95780 5hlv:A (2.2) BS01 CA ? GO:0002523 ... P05109 27251136
    95781 5hlv:A (2.2) BS02 CA ? GO:0002523 ... P05109 27251136
    95782 5hlv:A (2.2) BS03 ZN ? GO:0002523 ... P05109 27251136
    95783 5hlv:A (2.2) BS04 ZN ? GO:0002523 ... P05109 27251136
    95784 5hlv:B (2.2) BS01 CA ? GO:0002523 ... P05109 27251136
    95785 5hlv:B (2.2) BS02 CA ? GO:0002523 ... P05109 27251136
    95786 5hlv:B (2.2) BS03 ZN ? GO:0002523 ... P05109 27251136
    95787 5hlv:C (2.2) BS01 CA ? GO:0002523 ... P05109 27251136
    95788 5hlv:C (2.2) BS02 CA ? GO:0002523 ... P05109 27251136
    95789 5hlv:C (2.2) BS03 ZN ? GO:0002523 ... P05109 27251136
    95790 5hlv:C (2.2) BS04 ZN ? GO:0002523 ... P05109 27251136
    95791 5hlv:D (2.2) BS01 ZN ? GO:0002523 ... P05109 27251136
    95792 5hlv:D (2.2) BS02 ZN ? GO:0002523 ... P05109 27251136
    95793 5hlv:D (2.2) BS03 CA ? GO:0002523 ... P05109 27251136
    95794 5hlv:D (2.2) BS04 CA ? GO:0002523 ... P05109 27251136
    95795 5hlv:E (2.2) BS01 ZN ? GO:0002523 ... P05109 27251136
    95796 5hlv:E (2.2) BS02 ZN ? GO:0002523 ... P05109 27251136
    95797 5hlv:E (2.2) BS03 CA ? GO:0002523 ... P05109 27251136
    95798 5hlv:E (2.2) BS04 CA ? GO:0002523 ... P05109 27251136
    95799 5hlv:F (2.2) BS01 CA ? GO:0002523 ... P05109 27251136
    95800 5hlv:F (2.2) BS02 CA ? GO:0002523 ... P05109 27251136
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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