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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    95401 5hcq:29 (2.801) BS02 ZN ? GO:0003735 ... Q5SHR2 26809677
    95402 5hcq:2D (2.801) BS02 MG ? GO:0002181 ... P60405 26809677
    95403 5hcq:2D (2.801) BS03 MG ? GO:0002181 ... P60405 26809677
    95404 5hcq:2E (2.801) BS02 MG ? GO:0003735 ... Q5SHN8 26809677
    95405 5hcq:2F (2.801) BS02 MG ? GO:0003735 ... Q5SHN9 26809677
    95406 5hcq:2F (2.801) BS03 MG ? GO:0003735 ... Q5SHN9 26809677
    95407 5hcq:2F (2.801) BS04 MG ? GO:0003735 ... Q5SHN9 26809677
    95408 5hcq:2G (2.801) BS04 MG ? GO:0000049 ... Q5SHQ0 26809677
    95409 5hcq:2Q (2.801) BS03 MG ? GO:0000049 ... P60489 26809677
    95410 5hcq:2Q (2.801) BS04 MG ? GO:0000049 ... P60489 26809677
    95411 5hcq:2Q (2.801) BS05 MG ? GO:0000049 ... P60489 26809677
    95412 5hcq:2U (2.801) BS02 MG ? GO:0000027 ... P60491 26809677
    95413 5hcq:2V (2.801) BS02 MG ? GO:0003723 ... P60492 26809677
    95414 5hcq:2V (2.801) BS03 MG ? GO:0003723 ... P60492 26809677
    95415 5hcq:2W (2.801) BS02 MG ? GO:0003735 ... Q5SHP3 26809677
    95416 5hcq:2Y (2.801) BS02 ZN ? GO:0003723 ... Q5SHP9 26809677
    95417 5hcq:2e (2.801) BS02 MG ? GO:0003723 ... Q5SHQ5 26809677
    95418 5hcq:2f (2.801) BS02 MG ? GO:0003735 ... Q5SLP8 26809677
    95419 5hcq:2k (2.801) BS02 MG ? GO:0003735 ... P80376 26809677
    95420 5hcq:2l (2.801) BS02 MG ? GO:0000049 ... Q5SHN3 26809677
    95421 5hcq:2l (2.801) BS03 MG ? GO:0000049 ... Q5SHN3 26809677
    95422 5hcq:2n (2.801) BS02 ZN N/A GO:0003735 ... N/A 26809677
    95423 5hcq:2n (2.801) BS03 MG N/A GO:0003735 ... N/A 26809677
    95424 5hcr:14 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 26809677
    95425 5hcr:15 (2.8) BS02 MG ? GO:0003735 ... P80339 26809677
    95426 5hcr:15 (2.8) BS03 MG ? GO:0003735 ... P80339 26809677
    95427 5hcr:15 (2.8) BS04 ZN ? GO:0003735 ... P80339 26809677
    95428 5hcr:15 (2.8) BS05 MG ? GO:0003735 ... P80339 26809677
    95429 5hcr:16 (2.8) BS02 MG ? GO:0000049 ... P35871 26809677
    95430 5hcr:16 (2.8) BS03 ZN ? GO:0000049 ... P35871 26809677
    95431 5hcr:17 (2.8) BS02 MG ? GO:0003735 ... P80340 26809677
    95432 5hcr:17 (2.8) BS03 MG ? GO:0003735 ... P80340 26809677
    95433 5hcr:18 (2.8) BS02 MG ? GO:0003735 ... Q5SKU1 26809677
    95434 5hcr:19 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 26809677
    95435 5hcr:1D (2.8) BS03 MG ? GO:0002181 ... P60405 26809677
    95436 5hcr:1D (2.8) BS04 MG ? GO:0002181 ... P60405 26809677
    95437 5hcr:1D (2.8) BS05 MG ? GO:0002181 ... P60405 26809677
    95438 5hcr:1D (2.8) BS06 MG ? GO:0002181 ... P60405 26809677
    95439 5hcr:1D (2.8) BS07 MG ? GO:0002181 ... P60405 26809677
    95440 5hcr:1D (2.8) BS08 MG ? GO:0002181 ... P60405 26809677
    95441 5hcr:1D (2.8) BS09 MG ? GO:0002181 ... P60405 26809677
    95442 5hcr:1D (2.8) BS10 MG ? GO:0002181 ... P60405 26809677
    95443 5hcr:1D (2.8) BS11 MG ? GO:0002181 ... P60405 26809677
    95444 5hcr:1D (2.8) BS12 MG ? GO:0002181 ... P60405 26809677
    95445 5hcr:1E (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 26809677
    95446 5hcr:1F (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 26809677
    95447 5hcr:1F (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 26809677
    95448 5hcr:1F (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 26809677
    95449 5hcr:1F (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 26809677
    95450 5hcr:1F (2.8) BS06 MG ? GO:0003735 ... Q5SHN9 26809677
    95451 5hcr:1F (2.8) BS07 MG ? GO:0003735 ... Q5SHN9 26809677
    95452 5hcr:1G (2.8) BS04 MG ? GO:0000049 ... Q5SHQ0 26809677
    95453 5hcr:1H (2.8) BS02 MG N/A GO:0003735 ... N/A 26809677
    95454 5hcr:1N (2.8) BS02 MG ? GO:0003729 ... P60488 26809677
    95455 5hcr:1P (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 26809677
    95456 5hcr:1P (2.8) BS03 MG ? GO:0003735 ... Q5SHQ7 26809677
    95457 5hcr:1P (2.8) BS04 MG ? GO:0003735 ... Q5SHQ7 26809677
    95458 5hcr:1Q (2.8) BS03 MG ? GO:0000049 ... P60489 26809677
    95459 5hcr:1Q (2.8) BS04 MG ? GO:0000049 ... P60489 26809677
    95460 5hcr:1Q (2.8) BS05 MG ? GO:0000049 ... P60489 26809677
    95461 5hcr:1Q (2.8) BS06 MG ? GO:0000049 ... P60489 26809677
    95462 5hcr:1R (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 26809677
    95463 5hcr:1R (2.8) BS03 MG ? GO:0003735 ... Q9Z9H5 26809677
    95464 5hcr:1U (2.8) BS02 MG ? GO:0000027 ... P60491 26809677
    95465 5hcr:1U (2.8) BS03 MG ? GO:0000027 ... P60491 26809677
    95466 5hcr:1U (2.8) BS04 MG ? GO:0000027 ... P60491 26809677
    95467 5hcr:1U (2.8) BS05 MG ? GO:0000027 ... P60491 26809677
    95468 5hcr:1U (2.8) BS06 MG ? GO:0000027 ... P60491 26809677
    95469 5hcr:1U (2.8) BS07 MG ? GO:0000027 ... P60491 26809677
    95470 5hcr:1V (2.8) BS02 MG ? GO:0003723 ... P60492 26809677
    95471 5hcr:1V (2.8) BS03 MG ? GO:0003723 ... P60492 26809677
    95472 5hcr:1V (2.8) BS04 MG ? GO:0003723 ... P60492 26809677
    95473 5hcr:1V (2.8) BS05 MG ? GO:0003723 ... P60492 26809677
    95474 5hcr:1V (2.8) BS06 MG ? GO:0003723 ... P60492 26809677
    95475 5hcr:1W (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 26809677
    95476 5hcr:1W (2.8) BS03 MG ? GO:0003735 ... Q5SHP3 26809677
    95477 5hcr:1W (2.8) BS04 MG ? GO:0003735 ... Q5SHP3 26809677
    95478 5hcr:1X (2.8) BS02 MG ? GO:0000027 ... Q5SHP0 26809677
    95479 5hcr:1Y (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 26809677
    95480 5hcr:1Z (2.8) BS03 MG ? GO:0003723 ... Q5SHZ1 26809677
    95481 5hcr:1b (2.8) BS02 MG ? GO:0003735 ... P80371 26809677
    95482 5hcr:1d (2.8) BS03 MG ? GO:0003723 ... P80373 26809677
    95483 5hcr:1e (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 26809677
    95484 5hcr:1e (2.8) BS03 MG ? GO:0003723 ... Q5SHQ5 26809677
    95485 5hcr:1e (2.8) BS04 MG ? GO:0003723 ... Q5SHQ5 26809677
    95486 5hcr:1h (2.8) BS02 MG N/A GO:0003735 ... N/A 26809677
    95487 5hcr:1k (2.8) BS02 MG ? GO:0003735 ... P80376 26809677
    95488 5hcr:1l (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 26809677
    95489 5hcr:1m (2.8) BS02 MG ? GO:0000049 ... P80377 26809677
    95490 5hcr:1n (2.8) BS02 ZN N/A GO:0003735 ... N/A 26809677
    95491 5hcr:1n (2.8) BS03 MG N/A GO:0003735 ... N/A 26809677
    95492 5hcr:1r (2.8) BS02 MG ? GO:0003735 ... Q5SLQ0 26809677
    95493 5hcr:23 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 26809677
    95494 5hcr:24 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 26809677
    95495 5hcr:25 (2.8) BS02 ZN ? GO:0003735 ... P80339 26809677
    95496 5hcr:26 (2.8) BS02 ZN ? GO:0000049 ... P35871 26809677
    95497 5hcr:29 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 26809677
    95498 5hcr:2D (2.8) BS03 MG ? GO:0002181 ... P60405 26809677
    95499 5hcr:2D (2.8) BS04 MG ? GO:0002181 ... P60405 26809677
    95500 5hcr:2D (2.8) BS05 MG ? GO:0002181 ... P60405 26809677
    95501 5hcr:2D (2.8) BS06 MG ? GO:0002181 ... P60405 26809677
    95502 5hcr:2E (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 26809677
    95503 5hcr:2E (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 26809677
    95504 5hcr:2F (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 26809677
    95505 5hcr:2F (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 26809677
    95506 5hcr:2F (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 26809677
    95507 5hcr:2F (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 26809677
    95508 5hcr:2G (2.8) BS04 MG ? GO:0000049 ... Q5SHQ0 26809677
    95509 5hcr:2Q (2.8) BS03 MG ? GO:0000049 ... P60489 26809677
    95510 5hcr:2Q (2.8) BS04 MG ? GO:0000049 ... P60489 26809677
    95511 5hcr:2Q (2.8) BS05 MG ? GO:0000049 ... P60489 26809677
    95512 5hcr:2U (2.8) BS02 MG ? GO:0000027 ... P60491 26809677
    95513 5hcr:2V (2.8) BS02 MG ? GO:0003723 ... P60492 26809677
    95514 5hcr:2W (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 26809677
    95515 5hcr:2Y (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 26809677
    95516 5hcr:2e (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 26809677
    95517 5hcr:2f (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 26809677
    95518 5hcr:2l (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 26809677
    95519 5hcr:2l (2.8) BS03 MG ? GO:0000049 ... Q5SHN3 26809677
    95520 5hcr:2n (2.8) BS02 ZN N/A GO:0003735 ... N/A 26809677
    95521 5hcr:2t (2.8) BS02 MG ? GO:0003723 ... P80380 26809677
    95522 5hd1:10 (2.7) BS03 MG ? GO:0003735 ... P60493 26809677
    95523 5hd1:10 (2.7) BS04 MG ? GO:0003735 ... P60493 26809677
    95524 5hd1:14 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 26809677
    95525 5hd1:15 (2.7) BS02 MG ? GO:0003735 ... P80339 26809677
    95526 5hd1:15 (2.7) BS03 MG ? GO:0003735 ... P80339 26809677
    95527 5hd1:15 (2.7) BS04 ZN ? GO:0003735 ... P80339 26809677
    95528 5hd1:15 (2.7) BS05 MG ? GO:0003735 ... P80339 26809677
    95529 5hd1:16 (2.7) BS02 MG ? GO:0000049 ... P35871 26809677
    95530 5hd1:16 (2.7) BS03 ZN ? GO:0000049 ... P35871 26809677
    95531 5hd1:17 (2.7) BS02 MG ? GO:0003735 ... P80340 26809677
    95532 5hd1:17 (2.7) BS03 MG ? GO:0003735 ... P80340 26809677
    95533 5hd1:18 (2.7) BS02 MG ? GO:0003735 ... Q5SKU1 26809677
    95534 5hd1:19 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 26809677
    95535 5hd1:1D (2.7) BS03 MG ? GO:0002181 ... P60405 26809677
    95536 5hd1:1D (2.7) BS04 MG ? GO:0002181 ... P60405 26809677
    95537 5hd1:1D (2.7) BS05 MG ? GO:0002181 ... P60405 26809677
    95538 5hd1:1D (2.7) BS06 MG ? GO:0002181 ... P60405 26809677
    95539 5hd1:1D (2.7) BS07 MG ? GO:0002181 ... P60405 26809677
    95540 5hd1:1D (2.7) BS08 MG ? GO:0002181 ... P60405 26809677
    95541 5hd1:1D (2.7) BS09 MG ? GO:0002181 ... P60405 26809677
    95542 5hd1:1D (2.7) BS10 MG ? GO:0002181 ... P60405 26809677
    95543 5hd1:1D (2.7) BS11 MG ? GO:0002181 ... P60405 26809677
    95544 5hd1:1D (2.7) BS12 MG ? GO:0002181 ... P60405 26809677
    95545 5hd1:1D (2.7) BS13 MG ? GO:0002181 ... P60405 26809677
    95546 5hd1:1D (2.7) BS14 MG ? GO:0002181 ... P60405 26809677
    95547 5hd1:1D (2.7) BS15 MG ? GO:0002181 ... P60405 26809677
    95548 5hd1:1D (2.7) BS16 MG ? GO:0002181 ... P60405 26809677
    95549 5hd1:1D (2.7) BS17 MG ? GO:0002181 ... P60405 26809677
    95550 5hd1:1E (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 26809677
    95551 5hd1:1E (2.7) BS03 MG ? GO:0003735 ... Q5SHN8 26809677
    95552 5hd1:1E (2.7) BS04 MG ? GO:0003735 ... Q5SHN8 26809677
    95553 5hd1:1F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 26809677
    95554 5hd1:1F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 26809677
    95555 5hd1:1F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 26809677
    95556 5hd1:1F (2.7) BS05 MG ? GO:0003735 ... Q5SHN9 26809677
    95557 5hd1:1F (2.7) BS06 MG ? GO:0003735 ... Q5SHN9 26809677
    95558 5hd1:1F (2.7) BS07 MG ? GO:0003735 ... Q5SHN9 26809677
    95559 5hd1:1G (2.7) BS04 MG ? GO:0000049 ... Q5SHQ0 26809677
    95560 5hd1:1N (2.7) BS02 MG ? GO:0003729 ... P60488 26809677
    95561 5hd1:1N (2.7) BS03 MG ? GO:0003729 ... P60488 26809677
    95562 5hd1:1O (2.7) BS03 MG ? GO:0003735 ... Q5SHP8 26809677
    95563 5hd1:1P (2.7) BS02 MG ? GO:0003735 ... Q5SHQ7 26809677
    95564 5hd1:1P (2.7) BS03 MG ? GO:0003735 ... Q5SHQ7 26809677
    95565 5hd1:1P (2.7) BS04 MG ? GO:0003735 ... Q5SHQ7 26809677
    95566 5hd1:1Q (2.7) BS03 MG ? GO:0000049 ... P60489 26809677
    95567 5hd1:1Q (2.7) BS04 MG ? GO:0000049 ... P60489 26809677
    95568 5hd1:1Q (2.7) BS05 MG ? GO:0000049 ... P60489 26809677
    95569 5hd1:1R (2.7) BS02 MG ? GO:0003735 ... Q9Z9H5 26809677
    95570 5hd1:1R (2.7) BS03 MG ? GO:0003735 ... Q9Z9H5 26809677
    95571 5hd1:1U (2.7) BS02 MG ? GO:0000027 ... P60491 26809677
    95572 5hd1:1U (2.7) BS03 MG ? GO:0000027 ... P60491 26809677
    95573 5hd1:1U (2.7) BS04 MG ? GO:0000027 ... P60491 26809677
    95574 5hd1:1U (2.7) BS05 MG ? GO:0000027 ... P60491 26809677
    95575 5hd1:1U (2.7) BS06 MG ? GO:0000027 ... P60491 26809677
    95576 5hd1:1U (2.7) BS07 MG ? GO:0000027 ... P60491 26809677
    95577 5hd1:1V (2.7) BS02 MG ? GO:0003723 ... P60492 26809677
    95578 5hd1:1V (2.7) BS03 MG ? GO:0003723 ... P60492 26809677
    95579 5hd1:1V (2.7) BS04 MG ? GO:0003723 ... P60492 26809677
    95580 5hd1:1V (2.7) BS05 MG ? GO:0003723 ... P60492 26809677
    95581 5hd1:1W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 26809677
    95582 5hd1:1W (2.7) BS03 MG ? GO:0003735 ... Q5SHP3 26809677
    95583 5hd1:1W (2.7) BS04 MG ? GO:0003735 ... Q5SHP3 26809677
    95584 5hd1:1Y (2.7) BS02 ZN ? GO:0003723 ... Q5SHP9 26809677
    95585 5hd1:1b (2.7) BS02 MG ? GO:0003735 ... P80371 26809677
    95586 5hd1:1e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 26809677
    95587 5hd1:1h (2.7) BS02 MG N/A GO:0003735 ... N/A 26809677
    95588 5hd1:1k (2.7) BS02 MG ? GO:0003735 ... P80376 26809677
    95589 5hd1:1l (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 26809677
    95590 5hd1:1m (2.7) BS03 MG ? GO:0000049 ... P80377 26809677
    95591 5hd1:1n (2.7) BS02 ZN N/A GO:0003735 ... N/A 26809677
    95592 5hd1:1n (2.7) BS03 MG N/A GO:0003735 ... N/A 26809677
    95593 5hd1:1s (2.7) BS02 MG ? GO:0000028 ... Q5SHP2 26809677
    95594 5hd1:23 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 26809677
    95595 5hd1:24 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 26809677
    95596 5hd1:25 (2.7) BS02 ZN ? GO:0003735 ... P80339 26809677
    95597 5hd1:26 (2.7) BS02 ZN ? GO:0000049 ... P35871 26809677
    95598 5hd1:29 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 26809677
    95599 5hd1:2D (2.7) BS03 MG ? GO:0002181 ... P60405 26809677
    95600 5hd1:2D (2.7) BS04 MG ? GO:0002181 ... P60405 26809677
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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