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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    93401 5fdv:2d (2.8) BS04 MG ? GO:0003723 ... P80373 26792896
    93402 5fdv:2f (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 26792896
    93403 5fdv:2k (2.8) BS02 MG ? GO:0003735 ... P80376 26792896
    93404 5fdv:2l (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 26792896
    93405 5fdv:2m (2.8) BS02 MG ? GO:0000049 ... P80377 26792896
    93406 5fdv:2n (2.8) BS02 ZN N/A GO:0003735 ... N/A 26792896
    93407 5fej:A (2.5) BS01 CU1 ? N/A Q6YRW5 27599732
    93408 5fej:A (2.5) BS02 CU1 ? N/A Q6YRW5 27599732
    93409 5fej:B (2.5) BS01 CU1 ? N/A Q6YRW5 27599732
    93410 5fej:B (2.5) BS02 CU1 ? N/A Q6YRW5 27599732
    93411 5fej:C (2.5) BS01 CU1 ? N/A Q6YRW5 27599732
    93412 5fej:C (2.5) BS02 CU1 ? N/A Q6YRW5 27599732
    93413 5fej:D (2.5) BS01 CU1 ? N/A Q6YRW5 27599732
    93414 5fej:D (2.5) BS02 CU1 ? N/A Q6YRW5 27599732
    93415 5fem:A (2.168) BS01 MG 2.2.1.6 GO:0000287 ... P07342 26924714
    93416 5fem:A (2.168) BS04 MG 2.2.1.6 GO:0000287 ... P07342 26924714
    93417 5fem:B (2.168) BS04 MG 2.2.1.6 GO:0000287 ... P07342 26924714
    93418 5fem:B (2.168) BS06 MG 2.2.1.6 GO:0000287 ... P07342 26924714
    93419 5fer:A (2.34) BS01 ZN 2.3.2.27
    6.3.2.n3    		 N/A Q14258 27154206
    93420 5fer:A (2.34) BS02 ZN 2.3.2.27
    6.3.2.n3    		 N/A Q14258 27154206
    93421 5fer:D (2.34) BS01 ZN 2.3.2.27
    6.3.2.n3    		 N/A Q14258 27154206
    93422 5fer:D (2.34) BS02 ZN 2.3.2.27
    6.3.2.n3    		 N/A Q14258 27154206
    93423 5fey:A (2.23) BS01 ZN 2.3.2.27 N/A Q13049 27154206
    93424 5fey:A (2.23) BS02 ZN 2.3.2.27 N/A Q13049 27154206
    93425 5fey:B (2.23) BS01 ZN 2.3.2.27 N/A Q13049 27154206
    93426 5fey:B (2.23) BS02 ZN 2.3.2.27 N/A Q13049 27154206
    93427 5ff1:A (1.97) BS04 CA 1.11.1.7 GO:0004601 ... A0A452E9Y6 27398304
    93428 5ff1:B (1.97) BS03 CA 1.11.1.7 GO:0004601 ... A0A452E9Y6 27398304
    93429 5ff7:A (2.092) BS03 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    93430 5ff7:A (2.092) BS04 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    93431 5ff7:C (2.092) BS01 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    93432 5ffc:A (2.007) BS01 CU ? N/A Q6YRW5 27599732
    93433 5ffc:A (2.007) BS02 CU ? N/A Q6YRW5 27599732
    93434 5ffd:A (1.451) BS01 AG ? N/A Q6YRW5 27599732
    93435 5ffe:A (2.096) BS01 AG ? N/A Q6YRW5 27599732
    93436 5ffe:A (2.096) BS02 AG ? N/A Q6YRW5 27599732
    93437 5ffe:A (2.096) BS03 AG ? N/A Q6YRW5 27599732
    93438 5ffe:A (2.096) BS04 AG ? N/A Q6YRW5 27599732
    93439 5ffe:B (2.096) BS01 AG ? N/A Q6YRW5 27599732
    93440 5ffe:B (2.096) BS02 AG ? N/A Q6YRW5 27599732
    93441 5ffe:B (2.096) BS03 AG ? N/A Q6YRW5 27599732
    93442 5ffg:A (2.25) BS01 CA ? GO:0007155 ... P06756 28117447
    93443 5ffg:A (2.25) BS02 CA ? GO:0007155 ... P06756 28117447
    93444 5ffg:A (2.25) BS03 CA ? GO:0007155 ... P06756 28117447
    93445 5ffg:A (2.25) BS04 CA ? GO:0007155 ... P06756 28117447
    93446 5ffg:B (2.25) BS01 CA ? N/A P18564 28117447
    93447 5ffg:B (2.25) BS02 CA ? N/A P18564 28117447
    93448 5ffn:A (1.8) BS01 CA 3.4.21.14 GO:0004252 ... A0A182DWC8 N/A
    93449 5ffn:A (1.8) BS02 CA 3.4.21.14 GO:0004252 ... A0A182DWC8 N/A
    93450 5ffo:A (3.49) BS01 CA ? GO:0007155 ... P06756 28117447
    93451 5ffo:A (3.49) BS02 CA ? GO:0007155 ... P06756 28117447
    93452 5ffo:A (3.49) BS03 CA ? GO:0007155 ... P06756 28117447
    93453 5ffo:A (3.49) BS04 CA ? GO:0007155 ... P06756 28117447
    93454 5ffo:B (3.49) BS02 MN ? N/A P18564 28117447
    93455 5ffo:B (3.49) BS03 MN ? N/A P18564 28117447
    93456 5ffo:B (3.49) BS04 MN ? N/A P18564 28117447
    93457 5ffo:E (3.49) BS01 CA ? GO:0007155 ... P06756 28117447
    93458 5ffo:E (3.49) BS02 CA ? GO:0007155 ... P06756 28117447
    93459 5ffo:E (3.49) BS03 CA ? GO:0007155 ... P06756 28117447
    93460 5ffo:E (3.49) BS04 CA ? GO:0007155 ... P06756 28117447
    93461 5ffo:F (3.49) BS01 MN ? N/A P18564 28117447
    93462 5ffo:F (3.49) BS02 MN ? N/A P18564 28117447
    93463 5ffo:F (3.49) BS03 MN ? N/A P18564 28117447
    93464 5ffr:A (2.2) BS01 CA ? N/A P08427 27324153
    93465 5ffs:A (1.8) BS01 CA ? N/A P08427 27324153
    93466 5fft:A (2.2) BS01 CA ? N/A P08427 27324153
    93467 5fg7:G (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26964885
    93468 5fg7:I (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26964885
    93469 5fg7:K (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    93470 5fg7:N (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P38624 26964885
    93471 5fg7:V (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P25043 26964885
    93472 5fg7:W (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26964885
    93473 5fg7:Y (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    93474 5fg7:Z (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26964885
    93475 5fg8:A (1.955) BS03 MG 2.7.11.17 GO:0004672 ... Q00168 30381148
    93476 5fg9:G (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26964885
    93477 5fg9:I (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26964885
    93478 5fg9:J (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P22141 26964885
    93479 5fg9:K (2.6) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    93480 5fg9:N (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P38624 26964885
    93481 5fg9:V (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P25043 26964885
    93482 5fg9:Y (2.6) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    93483 5fg9:Z (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26964885
    93484 5fga:G (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26964885
    93485 5fga:K (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    93486 5fga:V (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26964885
    93487 5fga:W (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26964885
    93488 5fga:Y (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    93489 5fga:Z (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26964885
    93490 5fgd:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26964885
    93491 5fgd:K (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    93492 5fgd:V (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26964885
    93493 5fgd:Y (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    93494 5fgd:Z (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26964885
    93495 5fge:G (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26964885
    93496 5fge:I (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26964885
    93497 5fge:K (2.6) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    93498 5fge:N (2.6) BS02 MG 3.4.25.1 GO:0000502 ... P38624 26964885
    93499 5fge:V (2.6) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26964885
    93500 5fge:Y (2.6) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    93501 5fge:Z (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26964885
    93502 5fgf:G (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26964885
    93503 5fgf:I (2.6) BS02 MG 3.4.25.1 GO:0000502 ... P25451 26964885
    93504 5fgf:K (2.6) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    93505 5fgf:N (2.6) BS02 MG 3.4.25.1 GO:0000502 ... P38624 26964885
    93506 5fgf:V (2.6) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26964885
    93507 5fgf:Y (2.6) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    93508 5fgf:Z (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26964885
    93509 5fgf:Z (2.6) BS02 MG 3.4.25.1 GO:0000502 ... P23724 26964885
    93510 5fgf:b (2.6) BS02 MG 3.4.25.1 GO:0000502 ... P38624 26964885
    93511 5fgg:G (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26964885
    93512 5fgg:K (2.7) BS02 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    93513 5fgg:N (2.7) BS02 MG 3.4.25.1 GO:0000502 ... P38624 26964885
    93514 5fgg:V (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26964885
    93515 5fgg:Y (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    93516 5fgg:Z (2.7) BS02 MG 3.4.25.1 GO:0000502 ... P23724 26964885
    93517 5fgg:b (2.7) BS02 MG 3.4.25.1 GO:0000502 ... P38624 26964885
    93518 5fgh:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26964885
    93519 5fgh:K (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    93520 5fgh:N (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P38624 26964885
    93521 5fgh:V (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26964885
    93522 5fgh:Y (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    93523 5fgh:Z (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26964885
    93524 5fgi:G (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26964885
    93525 5fgi:I (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26964885
    93526 5fgi:K (2.9) BS02 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    93527 5fgi:N (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P38624 26964885
    93528 5fgi:Y (2.9) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    93529 5fgi:Z (2.9) BS02 MG 3.4.25.1 GO:0000502 ... P23724 26964885
    93530 5fgj:A (3.6) BS01 FE 1.14.16.1 GO:0004497 ... P04176 27145334
    93531 5fgj:B (3.6) BS01 FE 1.14.16.1 GO:0004497 ... P04176 27145334
    93532 5fgj:C (3.6) BS01 FE 1.14.16.1 GO:0004497 ... P04176 27145334
    93533 5fgj:D (3.6) BS01 FE 1.14.16.1 GO:0004497 ... P04176 27145334
    93534 5fgn:A (2.75) BS01 ZN ? GO:0005886 ... Q7DD94 28193899
    93535 5fgs:D (2.0) BS01 ZN N/A N/A N/A 27349405
    93536 5fgs:D (2.0) BS02 ZN N/A N/A N/A 27349405
    93537 5fgw:A (1.95) BS01 ZN ? GO:0003676 ... Q675N6 26969731
    93538 5fgw:B (1.95) BS01 ZN ? GO:0003676 ... Q675N6 26969731
    93539 5fgw:C (1.95) BS01 ZN ? GO:0003676 ... Q675N6 26969731
    93540 5fgw:D (1.95) BS01 ZN ? GO:0003676 ... Q675N6 26969731
    93541 5fh0:A (1.6) BS01 MN 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P07379 26709450
    93542 5fh1:A (1.55) BS01 MN 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P07379 26709450
    93543 5fh2:A (1.49) BS01 MN 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P07379 26709450
    93544 5fh3:A (1.6) BS01 MN 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P07379 26709450
    93545 5fh4:A (1.49) BS01 MN 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P07379 26709450
    93546 5fh4:A (1.49) BS02 MN 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P07379 26709450
    93547 5fh5:A (1.55) BS01 MN 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P07379 26709450
    93548 5fhe:A (2.9) BS03 MG N/A GO:0000723 ... N/A 26904952
    93549 5fhq:A (1.63) BS03 MG 2.1.1.6 GO:0000287 ... P22734 26797714
    93550 5fhr:A (1.63) BS02 MG 2.1.1.6 GO:0000287 ... P22734 26797714
    93551 5fhr:B (1.63) BS02 MG 2.1.1.6 GO:0000287 ... P22734 26797714
    93552 5fhs:G (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26964885
    93553 5fhs:K (2.7) BS02 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    93554 5fhs:N (2.7) BS02 MG 3.4.25.1 GO:0000502 ... P38624 26964885
    93555 5fhs:V (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26964885
    93556 5fhs:Y (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    93557 5fhs:Z (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26964885
    93558 5fi3:A (1.05) BS02 ZN ? GO:0000166 ... A0A0F6SD02 27418042
    93559 5fi3:A (1.05) BS03 ZN ? GO:0000166 ... A0A0F6SD02 27418042
    93560 5fi3:B (1.05) BS01 ZN ? GO:0000166 ... A0A0F6SD02 27418042
    93561 5fi3:B (1.05) BS03 ZN ? GO:0000166 ... A0A0F6SD02 27418042
    93562 5fi5:A (2.25) BS01 ZN ? GO:0000166 ... A0A0F6SD02 27418042
    93563 5fi5:A (2.25) BS02 ZN ? GO:0000166 ... A0A0F6SD02 27418042
    93564 5fi5:B (2.25) BS01 ZN ? GO:0000166 ... A0A0F6SD02 27418042
    93565 5fi5:B (2.25) BS02 ZN ? GO:0000166 ... A0A0F6SD02 27418042
    93566 5fi9:A (2.543) BS01 ZN 3.1.4.12
    3.1.4.3    		 GO:0001778 ... Q04519 27435900
    93567 5fi9:A (2.543) BS02 ZN 3.1.4.12
    3.1.4.3    		 GO:0001778 ... Q04519 27435900
    93568 5fi9:B (2.543) BS02 ZN 3.1.4.12
    3.1.4.3    		 GO:0001778 ... Q04519 27435900
    93569 5fi9:B (2.543) BS03 ZN 3.1.4.12
    3.1.4.3    		 GO:0001778 ... Q04519 27435900
    93570 5fib:A (2.8) BS01 ZN 3.1.4.12
    3.1.4.3    		 GO:0001778 ... Q04519 27435900
    93571 5fib:A (2.8) BS02 ZN 3.1.4.12
    3.1.4.3    		 GO:0001778 ... Q04519 27435900
    93572 5fib:A (2.8) BS03 ZN 3.1.4.12
    3.1.4.3    		 GO:0001778 ... Q04519 27435900
    93573 5fib:B (2.8) BS02 ZN 3.1.4.12
    3.1.4.3    		 GO:0001778 ... Q04519 27435900
    93574 5fib:B (2.8) BS03 ZN 3.1.4.12
    3.1.4.3    		 GO:0001778 ... Q04519 27435900
    93575 5fib:B (2.8) BS04 ZN 3.1.4.12
    3.1.4.3    		 GO:0001778 ... Q04519 27435900
    93576 5fic:A (2.8) BS01 ZN 3.1.4.12
    3.1.4.3    		 GO:0001778 ... Q04519 27435900
    93577 5fic:A (2.8) BS02 ZN 3.1.4.12
    3.1.4.3    		 GO:0001778 ... Q04519 27435900
    93578 5fic:B (2.8) BS01 ZN 3.1.4.12
    3.1.4.3    		 GO:0001778 ... Q04519 27435900
    93579 5fic:B (2.8) BS02 ZN 3.1.4.12
    3.1.4.3    		 GO:0001778 ... Q04519 27435900
    93580 5fic:C (2.8) BS02 ZN 3.1.4.12
    3.1.4.3    		 GO:0001778 ... Q04519 27435900
    93581 5fic:C (2.8) BS03 ZN 3.1.4.12
    3.1.4.3    		 GO:0001778 ... Q04519 27435900
    93582 5fic:D (2.8) BS01 ZN 3.1.4.12
    3.1.4.3    		 GO:0001778 ... Q04519 27435900
    93583 5fic:D (2.8) BS02 ZN 3.1.4.12
    3.1.4.3    		 GO:0001778 ... Q04519 27435900
    93584 5fiw:C (1.7) BS02 CA 1.11.2.2 GO:0004601 ... P05164 N/A
    93585 5fiw:D (1.7) BS03 CA 1.11.2.2 GO:0004601 ... P05164 N/A
    93586 5fj2:A (2.05) BS05 ZN 1.14.13.39 GO:0004517 ... P29473 26469213
    93587 5fj2:B (2.05) BS05 ZN 1.14.13.39 GO:0004517 ... P29473 26469213
    93588 5fj3:A (2.2) BS04 ZN 1.14.13.39 GO:0004517 ... P29473 26469213
    93589 5fj3:B (2.2) BS02 ZN 1.14.13.39 GO:0004517 ... P29473 26469213
    93590 5fj6:A (7.9) BS01 MN 2.7.7.48 GO:0000166 ... P11124 26534841
    93591 5fj7:C (7.9) BS01 MN 2.7.7.48 GO:0000166 ... P11124 26534841
    93592 5fj8:A (3.9) BS04 ZN 2.7.7.6 GO:0000428 ... P04051 26605533
    93593 5fj8:A (3.9) BS05 ZN 2.7.7.6 GO:0000428 ... P04051 26605533
    93594 5fj8:I (3.9) BS01 ZN ? GO:0000428 ... Q04307 26605533
    93595 5fj8:J (3.9) BS01 ZN ? GO:0000428 ... P22139 26605533
    93596 5fj8:L (3.9) BS01 ZN ? GO:0000428 ... P40422 26605533
    93597 5fj9:A (4.6) BS01 ZN 2.7.7.6 GO:0000428 ... P04051 26605533
    93598 5fj9:A (4.6) BS02 ZN 2.7.7.6 GO:0000428 ... P04051 26605533
    93599 5fj9:I (4.6) BS01 ZN ? GO:0000428 ... Q04307 26605533
    93600 5fj9:J (4.6) BS01 ZN ? GO:0000428 ... P22139 26605533
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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