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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    93201 5fdu:1P (2.9) BS02 MG ? GO:0003735 ... Q5SHQ7 26792896
    93202 5fdu:1P (2.9) BS03 MG ? GO:0003735 ... Q5SHQ7 26792896
    93203 5fdu:1P (2.9) BS04 MG ? GO:0003735 ... Q5SHQ7 26792896
    93204 5fdu:1Q (2.9) BS03 MG ? GO:0000049 ... P60489 26792896
    93205 5fdu:1Q (2.9) BS04 MG ? GO:0000049 ... P60489 26792896
    93206 5fdu:1Q (2.9) BS05 MG ? GO:0000049 ... P60489 26792896
    93207 5fdu:1Q (2.9) BS06 MG ? GO:0000049 ... P60489 26792896
    93208 5fdu:1R (2.9) BS02 MG ? GO:0003735 ... Q9Z9H5 26792896
    93209 5fdu:1U (2.9) BS02 MG ? GO:0000027 ... P60491 26792896
    93210 5fdu:1U (2.9) BS03 MG ? GO:0000027 ... P60491 26792896
    93211 5fdu:1U (2.9) BS04 MG ? GO:0000027 ... P60491 26792896
    93212 5fdu:1U (2.9) BS05 MG ? GO:0000027 ... P60491 26792896
    93213 5fdu:1U (2.9) BS06 MG ? GO:0000027 ... P60491 26792896
    93214 5fdu:1U (2.9) BS07 MG ? GO:0000027 ... P60491 26792896
    93215 5fdu:1V (2.9) BS02 MG ? GO:0003723 ... P60492 26792896
    93216 5fdu:1V (2.9) BS03 MG ? GO:0003723 ... P60492 26792896
    93217 5fdu:1V (2.9) BS04 MG ? GO:0003723 ... P60492 26792896
    93218 5fdu:1W (2.9) BS02 MG ? GO:0003735 ... Q5SHP3 26792896
    93219 5fdu:1Y (2.9) BS02 ZN ? GO:0003723 ... Q5SHP9 26792896
    93220 5fdu:1b (2.9) BS02 MG ? GO:0003735 ... P80371 26792896
    93221 5fdu:1e (2.9) BS02 MG ? GO:0003723 ... Q5SHQ5 26792896
    93222 5fdu:1k (2.9) BS02 MG ? GO:0003735 ... P80376 26792896
    93223 5fdu:1l (2.9) BS02 MG ? GO:0000049 ... Q5SHN3 26792896
    93224 5fdu:1m (2.9) BS03 MG ? GO:0000049 ... P80377 26792896
    93225 5fdu:1n (2.9) BS02 ZN N/A GO:0003735 ... N/A 26792896
    93226 5fdu:20 (2.9) BS03 MG ? GO:0003735 ... P60493 26792896
    93227 5fdu:20 (2.9) BS04 MG ? GO:0003735 ... P60493 26792896
    93228 5fdu:21 (2.9) BS02 MG ? GO:0003735 ... P60494 26792896
    93229 5fdu:23 (2.9) BS03 MG ? GO:0003735 ... Q5SHQ6 26792896
    93230 5fdu:24 (2.9) BS02 ZN ? GO:0003735 ... Q5SJE1 26792896
    93231 5fdu:25 (2.9) BS02 MG ? GO:0003735 ... P80339 26792896
    93232 5fdu:25 (2.9) BS03 MG ? GO:0003735 ... P80339 26792896
    93233 5fdu:25 (2.9) BS04 ZN ? GO:0003735 ... P80339 26792896
    93234 5fdu:26 (2.9) BS02 ZN ? GO:0000049 ... P35871 26792896
    93235 5fdu:27 (2.9) BS02 MG ? GO:0003735 ... P80340 26792896
    93236 5fdu:28 (2.9) BS02 MG ? GO:0003735 ... Q5SKU1 26792896
    93237 5fdu:29 (2.9) BS02 ZN ? GO:0003735 ... Q5SHR2 26792896
    93238 5fdu:2D (2.9) BS02 MG ? GO:0002181 ... P60405 26792896
    93239 5fdu:2D (2.9) BS03 MG ? GO:0002181 ... P60405 26792896
    93240 5fdu:2D (2.9) BS04 MG ? GO:0002181 ... P60405 26792896
    93241 5fdu:2D (2.9) BS05 MG ? GO:0002181 ... P60405 26792896
    93242 5fdu:2D (2.9) BS06 MG ? GO:0002181 ... P60405 26792896
    93243 5fdu:2D (2.9) BS07 MG ? GO:0002181 ... P60405 26792896
    93244 5fdu:2D (2.9) BS08 MG ? GO:0002181 ... P60405 26792896
    93245 5fdu:2E (2.9) BS02 MG ? GO:0003735 ... Q5SHN8 26792896
    93246 5fdu:2E (2.9) BS03 MG ? GO:0003735 ... Q5SHN8 26792896
    93247 5fdu:2E (2.9) BS04 MG ? GO:0003735 ... Q5SHN8 26792896
    93248 5fdu:2E (2.9) BS05 MG ? GO:0003735 ... Q5SHN8 26792896
    93249 5fdu:2F (2.9) BS02 MG ? GO:0003735 ... Q5SHN9 26792896
    93250 5fdu:2F (2.9) BS03 MG ? GO:0003735 ... Q5SHN9 26792896
    93251 5fdu:2F (2.9) BS04 MG ? GO:0003735 ... Q5SHN9 26792896
    93252 5fdu:2F (2.9) BS05 MG ? GO:0003735 ... Q5SHN9 26792896
    93253 5fdu:2F (2.9) BS06 MG ? GO:0003735 ... Q5SHN9 26792896
    93254 5fdu:2F (2.9) BS07 MG ? GO:0003735 ... Q5SHN9 26792896
    93255 5fdu:2F (2.9) BS08 MG ? GO:0003735 ... Q5SHN9 26792896
    93256 5fdu:2F (2.9) BS09 MG ? GO:0003735 ... Q5SHN9 26792896
    93257 5fdu:2F (2.9) BS10 MG ? GO:0003735 ... Q5SHN9 26792896
    93258 5fdu:2F (2.9) BS11 MG ? GO:0003735 ... Q5SHN9 26792896
    93259 5fdu:2G (2.9) BS03 MG ? GO:0000049 ... Q5SHQ0 26792896
    93260 5fdu:2H (2.9) BS02 MG N/A GO:0003735 ... N/A 26792896
    93261 5fdu:2P (2.9) BS02 MG ? GO:0003735 ... Q5SHQ7 26792896
    93262 5fdu:2Q (2.9) BS03 MG ? GO:0000049 ... P60489 26792896
    93263 5fdu:2Q (2.9) BS04 MG ? GO:0000049 ... P60489 26792896
    93264 5fdu:2R (2.9) BS02 MG ? GO:0003735 ... Q9Z9H5 26792896
    93265 5fdu:2R (2.9) BS03 MG ? GO:0003735 ... Q9Z9H5 26792896
    93266 5fdu:2U (2.9) BS02 MG ? GO:0000027 ... P60491 26792896
    93267 5fdu:2U (2.9) BS03 MG ? GO:0000027 ... P60491 26792896
    93268 5fdu:2V (2.9) BS02 MG ? GO:0003723 ... P60492 26792896
    93269 5fdu:2V (2.9) BS03 MG ? GO:0003723 ... P60492 26792896
    93270 5fdu:2V (2.9) BS04 MG ? GO:0003723 ... P60492 26792896
    93271 5fdu:2V (2.9) BS05 MG ? GO:0003723 ... P60492 26792896
    93272 5fdu:2W (2.9) BS02 MG ? GO:0003735 ... Q5SHP3 26792896
    93273 5fdu:2Y (2.9) BS02 ZN ? GO:0003723 ... Q5SHP9 26792896
    93274 5fdu:2b (2.9) BS02 MG ? GO:0003735 ... P80371 26792896
    93275 5fdu:2d (2.9) BS03 MG ? GO:0003723 ... P80373 26792896
    93276 5fdu:2d (2.9) BS04 MG ? GO:0003723 ... P80373 26792896
    93277 5fdu:2f (2.9) BS02 MG ? GO:0003735 ... Q5SLP8 26792896
    93278 5fdu:2k (2.9) BS02 MG ? GO:0003735 ... P80376 26792896
    93279 5fdu:2l (2.9) BS02 MG ? GO:0000049 ... Q5SHN3 26792896
    93280 5fdu:2m (2.9) BS02 MG ? GO:0000049 ... P80377 26792896
    93281 5fdu:2n (2.9) BS02 ZN N/A GO:0003735 ... N/A 26792896
    93282 5fdu:2n (2.9) BS03 MG N/A GO:0003735 ... N/A 26792896
    93283 5fdv:10 (2.8) BS03 MG ? GO:0003735 ... P60493 26792896
    93284 5fdv:10 (2.8) BS04 MG ? GO:0003735 ... P60493 26792896
    93285 5fdv:11 (2.8) BS02 MG ? GO:0003735 ... P60494 26792896
    93286 5fdv:13 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 26792896
    93287 5fdv:13 (2.8) BS04 MG ? GO:0003735 ... Q5SHQ6 26792896
    93288 5fdv:14 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 26792896
    93289 5fdv:15 (2.8) BS02 MG ? GO:0003735 ... P80339 26792896
    93290 5fdv:15 (2.8) BS03 ZN ? GO:0003735 ... P80339 26792896
    93291 5fdv:16 (2.8) BS02 ZN ? GO:0000049 ... P35871 26792896
    93292 5fdv:17 (2.8) BS02 MG ? GO:0003735 ... P80340 26792896
    93293 5fdv:17 (2.8) BS03 MG ? GO:0003735 ... P80340 26792896
    93294 5fdv:18 (2.8) BS02 MG ? GO:0003735 ... Q5SKU1 26792896
    93295 5fdv:18 (2.8) BS03 MG ? GO:0003735 ... Q5SKU1 26792896
    93296 5fdv:19 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 26792896
    93297 5fdv:1D (2.8) BS02 MG ? GO:0002181 ... P60405 26792896
    93298 5fdv:1D (2.8) BS03 MG ? GO:0002181 ... P60405 26792896
    93299 5fdv:1D (2.8) BS04 MG ? GO:0002181 ... P60405 26792896
    93300 5fdv:1D (2.8) BS05 MG ? GO:0002181 ... P60405 26792896
    93301 5fdv:1D (2.8) BS06 MG ? GO:0002181 ... P60405 26792896
    93302 5fdv:1D (2.8) BS07 MG ? GO:0002181 ... P60405 26792896
    93303 5fdv:1D (2.8) BS08 MG ? GO:0002181 ... P60405 26792896
    93304 5fdv:1D (2.8) BS09 MG ? GO:0002181 ... P60405 26792896
    93305 5fdv:1D (2.8) BS10 MG ? GO:0002181 ... P60405 26792896
    93306 5fdv:1D (2.8) BS11 MG ? GO:0002181 ... P60405 26792896
    93307 5fdv:1D (2.8) BS12 MG ? GO:0002181 ... P60405 26792896
    93308 5fdv:1E (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 26792896
    93309 5fdv:1E (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 26792896
    93310 5fdv:1E (2.8) BS04 MG ? GO:0003735 ... Q5SHN8 26792896
    93311 5fdv:1F (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 26792896
    93312 5fdv:1F (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 26792896
    93313 5fdv:1F (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 26792896
    93314 5fdv:1F (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 26792896
    93315 5fdv:1F (2.8) BS06 MG ? GO:0003735 ... Q5SHN9 26792896
    93316 5fdv:1F (2.8) BS07 MG ? GO:0003735 ... Q5SHN9 26792896
    93317 5fdv:1F (2.8) BS08 MG ? GO:0003735 ... Q5SHN9 26792896
    93318 5fdv:1F (2.8) BS09 MG ? GO:0003735 ... Q5SHN9 26792896
    93319 5fdv:1F (2.8) BS10 MG ? GO:0003735 ... Q5SHN9 26792896
    93320 5fdv:1F (2.8) BS11 MG ? GO:0003735 ... Q5SHN9 26792896
    93321 5fdv:1F (2.8) BS12 MG ? GO:0003735 ... Q5SHN9 26792896
    93322 5fdv:1F (2.8) BS13 MG ? GO:0003735 ... Q5SHN9 26792896
    93323 5fdv:1G (2.8) BS03 MG ? GO:0000049 ... Q5SHQ0 26792896
    93324 5fdv:1G (2.8) BS04 MG ? GO:0000049 ... Q5SHQ0 26792896
    93325 5fdv:1G (2.8) BS05 MG ? GO:0000049 ... Q5SHQ0 26792896
    93326 5fdv:1N (2.8) BS02 MG ? GO:0003729 ... P60488 26792896
    93327 5fdv:1P (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 26792896
    93328 5fdv:1P (2.8) BS03 MG ? GO:0003735 ... Q5SHQ7 26792896
    93329 5fdv:1P (2.8) BS04 MG ? GO:0003735 ... Q5SHQ7 26792896
    93330 5fdv:1Q (2.8) BS03 MG ? GO:0000049 ... P60489 26792896
    93331 5fdv:1Q (2.8) BS04 MG ? GO:0000049 ... P60489 26792896
    93332 5fdv:1Q (2.8) BS05 MG ? GO:0000049 ... P60489 26792896
    93333 5fdv:1Q (2.8) BS06 MG ? GO:0000049 ... P60489 26792896
    93334 5fdv:1R (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 26792896
    93335 5fdv:1R (2.8) BS03 MG ? GO:0003735 ... Q9Z9H5 26792896
    93336 5fdv:1U (2.8) BS02 MG ? GO:0000027 ... P60491 26792896
    93337 5fdv:1U (2.8) BS03 MG ? GO:0000027 ... P60491 26792896
    93338 5fdv:1U (2.8) BS04 MG ? GO:0000027 ... P60491 26792896
    93339 5fdv:1U (2.8) BS05 MG ? GO:0000027 ... P60491 26792896
    93340 5fdv:1U (2.8) BS06 MG ? GO:0000027 ... P60491 26792896
    93341 5fdv:1U (2.8) BS07 MG ? GO:0000027 ... P60491 26792896
    93342 5fdv:1V (2.8) BS02 MG ? GO:0003723 ... P60492 26792896
    93343 5fdv:1V (2.8) BS03 MG ? GO:0003723 ... P60492 26792896
    93344 5fdv:1V (2.8) BS04 MG ? GO:0003723 ... P60492 26792896
    93345 5fdv:1Y (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 26792896
    93346 5fdv:1b (2.8) BS02 MG ? GO:0003735 ... P80371 26792896
    93347 5fdv:1e (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 26792896
    93348 5fdv:1k (2.8) BS02 MG ? GO:0003735 ... P80376 26792896
    93349 5fdv:1l (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 26792896
    93350 5fdv:1m (2.8) BS03 MG ? GO:0000049 ... P80377 26792896
    93351 5fdv:1n (2.8) BS02 ZN N/A GO:0003735 ... N/A 26792896
    93352 5fdv:1t (2.8) BS02 MG ? GO:0003723 ... P80380 26792896
    93353 5fdv:20 (2.8) BS03 MG ? GO:0003735 ... P60493 26792896
    93354 5fdv:23 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 26792896
    93355 5fdv:24 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 26792896
    93356 5fdv:25 (2.8) BS02 ZN ? GO:0003735 ... P80339 26792896
    93357 5fdv:26 (2.8) BS02 ZN ? GO:0000049 ... P35871 26792896
    93358 5fdv:27 (2.8) BS02 MG ? GO:0003735 ... P80340 26792896
    93359 5fdv:28 (2.8) BS02 MG ? GO:0003735 ... Q5SKU1 26792896
    93360 5fdv:29 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 26792896
    93361 5fdv:2D (2.8) BS02 MG ? GO:0002181 ... P60405 26792896
    93362 5fdv:2D (2.8) BS03 MG ? GO:0002181 ... P60405 26792896
    93363 5fdv:2D (2.8) BS04 MG ? GO:0002181 ... P60405 26792896
    93364 5fdv:2D (2.8) BS05 MG ? GO:0002181 ... P60405 26792896
    93365 5fdv:2D (2.8) BS06 MG ? GO:0002181 ... P60405 26792896
    93366 5fdv:2D (2.8) BS07 MG ? GO:0002181 ... P60405 26792896
    93367 5fdv:2D (2.8) BS08 MG ? GO:0002181 ... P60405 26792896
    93368 5fdv:2E (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 26792896
    93369 5fdv:2E (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 26792896
    93370 5fdv:2E (2.8) BS04 MG ? GO:0003735 ... Q5SHN8 26792896
    93371 5fdv:2E (2.8) BS05 MG ? GO:0003735 ... Q5SHN8 26792896
    93372 5fdv:2F (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 26792896
    93373 5fdv:2F (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 26792896
    93374 5fdv:2F (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 26792896
    93375 5fdv:2F (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 26792896
    93376 5fdv:2F (2.8) BS06 MG ? GO:0003735 ... Q5SHN9 26792896
    93377 5fdv:2F (2.8) BS07 MG ? GO:0003735 ... Q5SHN9 26792896
    93378 5fdv:2F (2.8) BS08 MG ? GO:0003735 ... Q5SHN9 26792896
    93379 5fdv:2F (2.8) BS09 MG ? GO:0003735 ... Q5SHN9 26792896
    93380 5fdv:2F (2.8) BS10 MG ? GO:0003735 ... Q5SHN9 26792896
    93381 5fdv:2F (2.8) BS11 MG ? GO:0003735 ... Q5SHN9 26792896
    93382 5fdv:2F (2.8) BS12 MG ? GO:0003735 ... Q5SHN9 26792896
    93383 5fdv:2G (2.8) BS03 MG ? GO:0000049 ... Q5SHQ0 26792896
    93384 5fdv:2H (2.8) BS02 MG N/A GO:0003735 ... N/A 26792896
    93385 5fdv:2P (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 26792896
    93386 5fdv:2Q (2.8) BS03 MG ? GO:0000049 ... P60489 26792896
    93387 5fdv:2Q (2.8) BS04 MG ? GO:0000049 ... P60489 26792896
    93388 5fdv:2Q (2.8) BS05 MG ? GO:0000049 ... P60489 26792896
    93389 5fdv:2Q (2.8) BS06 MG ? GO:0000049 ... P60489 26792896
    93390 5fdv:2R (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 26792896
    93391 5fdv:2U (2.8) BS02 MG ? GO:0000027 ... P60491 26792896
    93392 5fdv:2U (2.8) BS03 MG ? GO:0000027 ... P60491 26792896
    93393 5fdv:2U (2.8) BS04 MG ? GO:0000027 ... P60491 26792896
    93394 5fdv:2U (2.8) BS05 MG ? GO:0000027 ... P60491 26792896
    93395 5fdv:2V (2.8) BS02 MG ? GO:0003723 ... P60492 26792896
    93396 5fdv:2V (2.8) BS03 MG ? GO:0003723 ... P60492 26792896
    93397 5fdv:2V (2.8) BS04 MG ? GO:0003723 ... P60492 26792896
    93398 5fdv:2Y (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 26792896
    93399 5fdv:2b (2.8) BS02 MG ? GO:0003735 ... P80371 26792896
    93400 5fdv:2d (2.8) BS03 MG ? GO:0003723 ... P80373 26792896
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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