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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    93001 5fbz:A (1.9) BS02 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    93002 5fbz:A (1.9) BS03 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    93003 5fbz:A (1.9) BS04 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    93004 5fbz:C (1.9) BS01 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    93005 5fbz:C (1.9) BS02 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    93006 5fbz:C (1.9) BS03 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    93007 5fc1:A (1.389) BS01 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 26792860
    93008 5fc1:A (1.389) BS02 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 26792860
    93009 5fc5:A (1.678) BS01 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 26792860
    93010 5fc5:A (1.678) BS02 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 26792860
    93011 5fc6:A (1.658) BS01 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 26792860
    93012 5fc6:A (1.658) BS02 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 26792860
    93013 5fc7:A (1.456) BS01 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 26792860
    93014 5fc7:A (1.456) BS02 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 26792860
    93015 5fc9:A (1.6) BS01 CU ? GO:0005507 ... A9A2G4 27120678
    93016 5fc9:B (1.6) BS01 CU ? GO:0005507 ... A9A2G4 27120678
    93017 5fc9:C (1.6) BS01 CU ? GO:0005507 ... A9A2G4 27120678
    93018 5fc9:D (1.6) BS01 CU ? GO:0005507 ... A9A2G4 27120678
    93019 5fca:A (1.924) BS01 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 26792860
    93020 5fca:A (1.924) BS02 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 26792860
    93021 5fca:A (1.924) BS03 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 26792860
    93022 5fca:A (1.924) BS04 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 26792860
    93023 5fca:B (1.924) BS01 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 26792860
    93024 5fca:B (1.924) BS02 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 26792860
    93025 5fca:B (1.924) BS03 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 26792860
    93026 5fca:B (1.924) BS04 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 26792860
    93027 5fcb:A (1.55) BS01 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 26792860
    93028 5fcb:A (1.55) BS02 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 26792860
    93029 5fcf:A (1.85) BS02 MN 3.4.13.9 GO:0046872 ... Q8P839 27816563
    93030 5fcf:A (1.85) BS03 MN 3.4.13.9 GO:0046872 ... Q8P839 27816563
    93031 5fcf:B (1.85) BS02 MN 3.4.13.9 GO:0046872 ... Q8P839 27816563
    93032 5fcf:B (1.85) BS03 MN 3.4.13.9 GO:0046872 ... Q8P839 27816563
    93033 5fch:A (1.95) BS02 ZN 3.4.13.9 GO:0046872 ... Q8P839 27816563
    93034 5fch:A (1.95) BS03 ZN 3.4.13.9 GO:0046872 ... Q8P839 27816563
    93035 5fch:B (1.95) BS02 ZN 3.4.13.9 GO:0046872 ... Q8P839 27816563
    93036 5fch:B (1.95) BS03 ZN 3.4.13.9 GO:0046872 ... Q8P839 27816563
    93037 5fci:C8 (3.4) BS02 MG ? GO:0000054 ... P0CX55 26906928
    93038 5fci:C9 (3.4) BS02 MG ? GO:0000028 ... P07280 26906928
    93039 5fci:D6 (3.4) BS02 ZN ? GO:0003735 ... P39939 26906928
    93040 5fci:D9 (3.4) BS02 ZN ? GO:0002181 ... P41057 26906928
    93041 5fci:D9 (3.4) BS04 MG ? GO:0002181 ... P41057 26906928
    93042 5fci:D9 (3.4) BS05 MG ? GO:0002181 ... P41057 26906928
    93043 5fci:E1 (3.4) BS02 ZN ? GO:0003735 ... P05759 26906928
    93044 5fci:L2 (3.4) BS03 MG ? GO:0002181 ... P0CX45 26906928
    93045 5fci:L3 (3.4) BS02 MG ? GO:0000027 ... P14126 26906928
    93046 5fci:L3 (3.4) BS03 MG ? GO:0000027 ... P14126 26906928
    93047 5fci:L4 (3.4) BS04 MG ? GO:0002181 ... P10664 26906928
    93048 5fci:M0 (3.4) BS03 MG ? GO:0000027 ... P41805 26906928
    93049 5fci:M3 (3.4) BS03 MG ? GO:0002181 ... Q12690 26906928
    93050 5fci:M7 (3.4) BS04 MG ? GO:0000448 ... P05740 26906928
    93051 5fci:M8 (3.4) BS02 MG ? GO:0002181 ... P0CX49 26906928
    93052 5fci:N0 (3.4) BS03 MG ? GO:0002181 ... P0CX23 26906928
    93053 5fci:N6 (3.4) BS03 MG ? GO:0002181 ... P05743 26906928
    93054 5fci:N8 (3.4) BS03 MG ? GO:0002181 ... P02406 26906928
    93055 5fci:O1 (3.4) BS02 MG ? GO:0002181 ... P0C2H8 26906928
    93056 5fci:O1 (3.4) BS03 MG ? GO:0002181 ... P0C2H8 26906928
    93057 5fci:O2 (3.4) BS02 MG ? GO:0002181 ... P38061 26906928
    93058 5fci:O7 (3.4) BS04 ZN ? GO:0000448 ... P49166 26906928
    93059 5fci:Q0 (3.4) BS02 MG ? GO:0003735 ... P0CH08 26906928
    93060 5fci:Q0 (3.4) BS03 ZN ? GO:0003735 ... P0CH08 26906928
    93061 5fci:Q3 (3.4) BS02 ZN ? GO:0002181 ... P0CX25 26906928
    93062 5fci:c8 (3.4) BS02 MG ? GO:0000054 ... P0CX55 26906928
    93063 5fci:c8 (3.4) BS04 MG ? GO:0000054 ... P0CX55 26906928
    93064 5fci:c9 (3.4) BS02 MG ? GO:0000028 ... P07280 26906928
    93065 5fci:d6 (3.4) BS02 ZN ? GO:0003735 ... P39939 26906928
    93066 5fci:d9 (3.4) BS02 ZN ? GO:0002181 ... P41057 26906928
    93067 5fci:e1 (3.4) BS02 ZN ? GO:0003735 ... P05759 26906928
    93068 5fci:l3 (3.4) BS03 MG ? GO:0000027 ... P14126 26906928
    93069 5fci:l3 (3.4) BS04 MG ? GO:0000027 ... P14126 26906928
    93070 5fci:l9 (3.4) BS03 MG ? GO:0002181 ... P05738 26906928
    93071 5fci:m5 (3.4) BS04 MG ? GO:0002181 ... P05748 26906928
    93072 5fci:m6 (3.4) BS02 MG ? GO:0000470 ... P26784 26906928
    93073 5fci:m6 (3.4) BS03 MG ? GO:0000470 ... P26784 26906928
    93074 5fci:n0 (3.4) BS03 MG ? GO:0002181 ... P0CX23 26906928
    93075 5fci:n0 (3.4) BS04 MG ? GO:0002181 ... P0CX23 26906928
    93076 5fci:n6 (3.4) BS04 MG ? GO:0002181 ... P05743 26906928
    93077 5fci:n9 (3.4) BS03 MG ? GO:0002181 ... P05747 26906928
    93078 5fci:o1 (3.4) BS02 MG ? GO:0002181 ... P0C2H8 26906928
    93079 5fci:o3 (3.4) BS03 MG ? GO:0000027 ... P05744 26906928
    93080 5fci:o4 (3.4) BS02 MG ? GO:0002181 ... P87262 26906928
    93081 5fci:o7 (3.4) BS03 ZN ? GO:0000448 ... P49166 26906928
    93082 5fci:q0 (3.4) BS02 ZN ? GO:0003735 ... P0CH08 26906928
    93083 5fci:q3 (3.4) BS03 ZN ? GO:0002181 ... P0CX25 26906928
    93084 5fcj:C8 (3.1) BS02 MG ? GO:0000054 ... P0CX55 26906928
    93085 5fcj:D6 (3.1) BS02 ZN ? GO:0003735 ... P39939 26906928
    93086 5fcj:D9 (3.1) BS02 ZN ? GO:0002181 ... P41057 26906928
    93087 5fcj:E1 (3.1) BS02 ZN ? GO:0003735 ... P05759 26906928
    93088 5fcj:L2 (3.1) BS03 MG ? GO:0002181 ... P0CX45 26906928
    93089 5fcj:L2 (3.1) BS04 MG ? GO:0002181 ... P0CX45 26906928
    93090 5fcj:L7 (3.1) BS03 MG ? GO:0000463 ... P05737 26906928
    93091 5fcj:M7 (3.1) BS03 MG ? GO:0000448 ... P05740 26906928
    93092 5fcj:M7 (3.1) BS04 MG ? GO:0000448 ... P05740 26906928
    93093 5fcj:M8 (3.1) BS02 MG ? GO:0002181 ... P0CX49 26906928
    93094 5fcj:N0 (3.1) BS03 MG ? GO:0002181 ... P0CX23 26906928
    93095 5fcj:N5 (3.1) BS03 MG ? GO:0000027 ... P04456 26906928
    93096 5fcj:N8 (3.1) BS02 MG ? GO:0002181 ... P02406 26906928
    93097 5fcj:N8 (3.1) BS03 MG ? GO:0002181 ... P02406 26906928
    93098 5fcj:N8 (3.1) BS04 MG ? GO:0002181 ... P02406 26906928
    93099 5fcj:O4 (3.1) BS02 MG ? GO:0002181 ... P87262 26906928
    93100 5fcj:O7 (3.1) BS04 ZN ? GO:0000448 ... P49166 26906928
    93101 5fcj:O9 (3.1) BS03 MG ? GO:0002181 ... P04650 26906928
    93102 5fcj:Q0 (3.1) BS02 ZN ? GO:0003735 ... P0CH08 26906928
    93103 5fcj:Q2 (3.1) BS02 ZN ? GO:0002181 ... P0CX27 26906928
    93104 5fcj:Q3 (3.1) BS02 ZN ? GO:0002181 ... P0CX25 26906928
    93105 5fcj:c8 (3.1) BS02 MG ? GO:0000054 ... P0CX55 26906928
    93106 5fcj:c9 (3.1) BS02 MG ? GO:0000028 ... P07280 26906928
    93107 5fcj:d6 (3.1) BS02 ZN ? GO:0003735 ... P39939 26906928
    93108 5fcj:d7 (3.1) BS02 ZN ? GO:0000028 ... P35997 26906928
    93109 5fcj:d9 (3.1) BS02 ZN ? GO:0002181 ... P41057 26906928
    93110 5fcj:l2 (3.1) BS03 MG ? GO:0002181 ... P0CX45 26906928
    93111 5fcj:l2 (3.1) BS04 MG ? GO:0002181 ... P0CX45 26906928
    93112 5fcj:l3 (3.1) BS02 MG ? GO:0000027 ... P14126 26906928
    93113 5fcj:l3 (3.1) BS03 MG ? GO:0000027 ... P14126 26906928
    93114 5fcj:l3 (3.1) BS04 MG ? GO:0000027 ... P14126 26906928
    93115 5fcj:l3 (3.1) BS05 MG ? GO:0000027 ... P14126 26906928
    93116 5fcj:l3 (3.1) BS06 MG ? GO:0000027 ... P14126 26906928
    93117 5fcj:m5 (3.1) BS04 MG ? GO:0002181 ... P05748 26906928
    93118 5fcj:m5 (3.1) BS05 MG ? GO:0002181 ... P05748 26906928
    93119 5fcj:m6 (3.1) BS02 MG ? GO:0000470 ... P26784 26906928
    93120 5fcj:m6 (3.1) BS03 MG ? GO:0000470 ... P26784 26906928
    93121 5fcj:m7 (3.1) BS03 MG ? GO:0000448 ... P05740 26906928
    93122 5fcj:m8 (3.1) BS02 MG ? GO:0002181 ... P0CX49 26906928
    93123 5fcj:n8 (3.1) BS02 MG ? GO:0002181 ... P02406 26906928
    93124 5fcj:o1 (3.1) BS02 MG ? GO:0002181 ... P0C2H8 26906928
    93125 5fcj:o3 (3.1) BS02 MG ? GO:0000027 ... P05744 26906928
    93126 5fcj:o4 (3.1) BS02 MG ? GO:0002181 ... P87262 26906928
    93127 5fcj:o7 (3.1) BS03 ZN ? GO:0000448 ... P49166 26906928
    93128 5fcj:q0 (3.1) BS02 ZN ? GO:0003735 ... P0CH08 26906928
    93129 5fcj:q2 (3.1) BS02 ZN ? GO:0002181 ... P0CX27 26906928
    93130 5fcj:q3 (3.1) BS03 ZN ? GO:0002181 ... P0CX25 26906928
    93131 5fcj:sM (3.1) BS03 MG ? N/A P39015 26906928
    93132 5fcw:A (1.979) BS02 ZN 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 27374062
    93133 5fcw:B (1.979) BS02 ZN 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 27374062
    93134 5fd3:A (2.42) BS03 ZN ? N/A Q6MZP7 27465258
    93135 5fd3:A (2.42) BS04 ZN ? N/A Q6MZP7 27465258
    93136 5fd3:A (2.42) BS05 ZN ? N/A Q6MZP7 27465258
    93137 5fd3:A (2.42) BS06 ZN ? N/A Q6MZP7 27465258
    93138 5fd3:A (2.42) BS07 ZN ? N/A Q6MZP7 27465258
    93139 5fd3:A (2.42) BS08 ZN ? N/A Q6MZP7 27465258
    93140 5fd3:B (2.42) BS03 ZN ? N/A Q6MZP7 27465258
    93141 5fd3:B (2.42) BS04 ZN ? N/A Q6MZP7 27465258
    93142 5fd3:B (2.42) BS05 ZN ? N/A Q6MZP7 27465258
    93143 5fd3:B (2.42) BS06 ZN ? N/A Q6MZP7 27465258
    93144 5fd3:B (2.42) BS07 ZN ? N/A Q6MZP7 27465258
    93145 5fd3:B (2.42) BS08 ZN ? N/A Q6MZP7 27465258
    93146 5fd6:A (2.48) BS01 ZN ? GO:0000976 ... O07315 N/A
    93147 5fd6:A (2.48) BS02 ZN ? GO:0000976 ... O07315 N/A
    93148 5fd6:B (2.48) BS01 ZN ? GO:0000976 ... O07315 N/A
    93149 5fd6:B (2.48) BS02 ZN ? GO:0000976 ... O07315 N/A
    93150 5fd6:C (2.48) BS01 ZN ? GO:0000976 ... O07315 N/A
    93151 5fd6:C (2.48) BS02 ZN ? GO:0000976 ... O07315 N/A
    93152 5fd6:D (2.48) BS01 ZN ? GO:0000976 ... O07315 N/A
    93153 5fd6:D (2.48) BS02 ZN ? GO:0000976 ... O07315 N/A
    93154 5fdc:A (1.75) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 27151329
    93155 5fdg:A (2.1) BS01 MN 3.1.-.- GO:0003723 ... P03433 27088785
    93156 5fdg:A (2.1) BS02 MN 3.1.-.- GO:0003723 ... P03433 27088785
    93157 5fdi:A (1.85) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 27151329
    93158 5fdu:10 (2.9) BS03 MG ? GO:0003735 ... P60493 26792896
    93159 5fdu:10 (2.9) BS04 MG ? GO:0003735 ... P60493 26792896
    93160 5fdu:10 (2.9) BS05 MG ? GO:0003735 ... P60493 26792896
    93161 5fdu:11 (2.9) BS02 MG ? GO:0003735 ... P60494 26792896
    93162 5fdu:13 (2.9) BS03 MG ? GO:0003735 ... Q5SHQ6 26792896
    93163 5fdu:13 (2.9) BS04 MG ? GO:0003735 ... Q5SHQ6 26792896
    93164 5fdu:14 (2.9) BS02 ZN ? GO:0003735 ... Q5SJE1 26792896
    93165 5fdu:15 (2.9) BS02 MG ? GO:0003735 ... P80339 26792896
    93166 5fdu:15 (2.9) BS03 MG ? GO:0003735 ... P80339 26792896
    93167 5fdu:15 (2.9) BS04 ZN ? GO:0003735 ... P80339 26792896
    93168 5fdu:16 (2.9) BS02 ZN ? GO:0000049 ... P35871 26792896
    93169 5fdu:17 (2.9) BS02 MG ? GO:0003735 ... P80340 26792896
    93170 5fdu:17 (2.9) BS03 MG ? GO:0003735 ... P80340 26792896
    93171 5fdu:17 (2.9) BS04 MG ? GO:0003735 ... P80340 26792896
    93172 5fdu:18 (2.9) BS02 MG ? GO:0003735 ... Q5SKU1 26792896
    93173 5fdu:18 (2.9) BS03 MG ? GO:0003735 ... Q5SKU1 26792896
    93174 5fdu:19 (2.9) BS02 ZN ? GO:0003735 ... Q5SHR2 26792896
    93175 5fdu:1D (2.9) BS02 MG ? GO:0002181 ... P60405 26792896
    93176 5fdu:1D (2.9) BS03 MG ? GO:0002181 ... P60405 26792896
    93177 5fdu:1D (2.9) BS04 MG ? GO:0002181 ... P60405 26792896
    93178 5fdu:1D (2.9) BS05 MG ? GO:0002181 ... P60405 26792896
    93179 5fdu:1D (2.9) BS06 MG ? GO:0002181 ... P60405 26792896
    93180 5fdu:1D (2.9) BS07 MG ? GO:0002181 ... P60405 26792896
    93181 5fdu:1D (2.9) BS08 MG ? GO:0002181 ... P60405 26792896
    93182 5fdu:1D (2.9) BS09 MG ? GO:0002181 ... P60405 26792896
    93183 5fdu:1D (2.9) BS10 MG ? GO:0002181 ... P60405 26792896
    93184 5fdu:1D (2.9) BS11 MG ? GO:0002181 ... P60405 26792896
    93185 5fdu:1E (2.9) BS02 MG ? GO:0003735 ... Q5SHN8 26792896
    93186 5fdu:1E (2.9) BS03 MG ? GO:0003735 ... Q5SHN8 26792896
    93187 5fdu:1E (2.9) BS04 MG ? GO:0003735 ... Q5SHN8 26792896
    93188 5fdu:1F (2.9) BS02 MG ? GO:0003735 ... Q5SHN9 26792896
    93189 5fdu:1F (2.9) BS03 MG ? GO:0003735 ... Q5SHN9 26792896
    93190 5fdu:1F (2.9) BS04 MG ? GO:0003735 ... Q5SHN9 26792896
    93191 5fdu:1F (2.9) BS05 MG ? GO:0003735 ... Q5SHN9 26792896
    93192 5fdu:1F (2.9) BS06 MG ? GO:0003735 ... Q5SHN9 26792896
    93193 5fdu:1F (2.9) BS07 MG ? GO:0003735 ... Q5SHN9 26792896
    93194 5fdu:1F (2.9) BS08 MG ? GO:0003735 ... Q5SHN9 26792896
    93195 5fdu:1F (2.9) BS09 MG ? GO:0003735 ... Q5SHN9 26792896
    93196 5fdu:1F (2.9) BS10 MG ? GO:0003735 ... Q5SHN9 26792896
    93197 5fdu:1F (2.9) BS11 MG ? GO:0003735 ... Q5SHN9 26792896
    93198 5fdu:1G (2.9) BS03 MG ? GO:0000049 ... Q5SHQ0 26792896
    93199 5fdu:1G (2.9) BS04 MG ? GO:0000049 ... Q5SHQ0 26792896
    93200 5fdu:1G (2.9) BS05 MG ? GO:0000049 ... Q5SHQ0 26792896
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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