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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    92801 5f8k:1R (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 26792896
    92802 5f8k:1R (2.8) BS03 MG ? GO:0003735 ... Q9Z9H5 26792896
    92803 5f8k:1R (2.8) BS04 MG ? GO:0003735 ... Q9Z9H5 26792896
    92804 5f8k:1R (2.8) BS05 MG ? GO:0003735 ... Q9Z9H5 26792896
    92805 5f8k:1T (2.8) BS03 MG ? GO:0003735 ... P60490 26792896
    92806 5f8k:1U (2.8) BS02 MG ? GO:0000027 ... P60491 26792896
    92807 5f8k:1U (2.8) BS03 MG ? GO:0000027 ... P60491 26792896
    92808 5f8k:1U (2.8) BS04 MG ? GO:0000027 ... P60491 26792896
    92809 5f8k:1U (2.8) BS05 MG ? GO:0000027 ... P60491 26792896
    92810 5f8k:1V (2.8) BS02 MG ? GO:0003723 ... P60492 26792896
    92811 5f8k:1V (2.8) BS03 MG ? GO:0003723 ... P60492 26792896
    92812 5f8k:1V (2.8) BS04 MG ? GO:0003723 ... P60492 26792896
    92813 5f8k:1W (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 26792896
    92814 5f8k:1Y (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 26792896
    92815 5f8k:1b (2.8) BS02 MG ? GO:0003735 ... P80371 26792896
    92816 5f8k:1e (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 26792896
    92817 5f8k:1k (2.8) BS02 MG ? GO:0003735 ... P80376 26792896
    92818 5f8k:1l (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 26792896
    92819 5f8k:1m (2.8) BS03 MG ? GO:0000049 ... P80377 26792896
    92820 5f8k:1n (2.8) BS02 ZN N/A GO:0003735 ... N/A 26792896
    92821 5f8k:1t (2.8) BS02 MG ? GO:0003723 ... P80380 26792896
    92822 5f8k:20 (2.8) BS03 MG ? GO:0003735 ... P60493 26792896
    92823 5f8k:20 (2.8) BS04 MG ? GO:0003735 ... P60493 26792896
    92824 5f8k:20 (2.8) BS05 MG ? GO:0003735 ... P60493 26792896
    92825 5f8k:20 (2.8) BS06 MG ? GO:0003735 ... P60493 26792896
    92826 5f8k:20 (2.8) BS07 MG ? GO:0003735 ... P60493 26792896
    92827 5f8k:21 (2.8) BS02 MG ? GO:0003735 ... P60494 26792896
    92828 5f8k:23 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 26792896
    92829 5f8k:24 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 26792896
    92830 5f8k:25 (2.8) BS02 MG ? GO:0003735 ... P80339 26792896
    92831 5f8k:25 (2.8) BS03 MG ? GO:0003735 ... P80339 26792896
    92832 5f8k:25 (2.8) BS04 MG ? GO:0003735 ... P80339 26792896
    92833 5f8k:25 (2.8) BS05 ZN ? GO:0003735 ... P80339 26792896
    92834 5f8k:26 (2.8) BS02 ZN ? GO:0000049 ... P35871 26792896
    92835 5f8k:27 (2.8) BS02 MG ? GO:0003735 ... P80340 26792896
    92836 5f8k:28 (2.8) BS02 MG ? GO:0003735 ... Q5SKU1 26792896
    92837 5f8k:29 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 26792896
    92838 5f8k:2D (2.8) BS03 MG ? GO:0002181 ... P60405 26792896
    92839 5f8k:2D (2.8) BS04 MG ? GO:0002181 ... P60405 26792896
    92840 5f8k:2D (2.8) BS05 MG ? GO:0002181 ... P60405 26792896
    92841 5f8k:2D (2.8) BS06 MG ? GO:0002181 ... P60405 26792896
    92842 5f8k:2D (2.8) BS07 MG ? GO:0002181 ... P60405 26792896
    92843 5f8k:2D (2.8) BS08 MG ? GO:0002181 ... P60405 26792896
    92844 5f8k:2D (2.8) BS09 MG ? GO:0002181 ... P60405 26792896
    92845 5f8k:2D (2.8) BS10 MG ? GO:0002181 ... P60405 26792896
    92846 5f8k:2D (2.8) BS11 MG ? GO:0002181 ... P60405 26792896
    92847 5f8k:2D (2.8) BS12 MG ? GO:0002181 ... P60405 26792896
    92848 5f8k:2D (2.8) BS13 MG ? GO:0002181 ... P60405 26792896
    92849 5f8k:2E (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 26792896
    92850 5f8k:2E (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 26792896
    92851 5f8k:2E (2.8) BS04 MG ? GO:0003735 ... Q5SHN8 26792896
    92852 5f8k:2E (2.8) BS05 MG ? GO:0003735 ... Q5SHN8 26792896
    92853 5f8k:2F (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 26792896
    92854 5f8k:2F (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 26792896
    92855 5f8k:2F (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 26792896
    92856 5f8k:2F (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 26792896
    92857 5f8k:2F (2.8) BS06 MG ? GO:0003735 ... Q5SHN9 26792896
    92858 5f8k:2F (2.8) BS07 MG ? GO:0003735 ... Q5SHN9 26792896
    92859 5f8k:2F (2.8) BS08 MG ? GO:0003735 ... Q5SHN9 26792896
    92860 5f8k:2F (2.8) BS09 MG ? GO:0003735 ... Q5SHN9 26792896
    92861 5f8k:2G (2.8) BS04 MG ? GO:0000049 ... Q5SHQ0 26792896
    92862 5f8k:2G (2.8) BS05 MG ? GO:0000049 ... Q5SHQ0 26792896
    92863 5f8k:2P (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 26792896
    92864 5f8k:2P (2.8) BS03 MG ? GO:0003735 ... Q5SHQ7 26792896
    92865 5f8k:2P (2.8) BS04 MG ? GO:0003735 ... Q5SHQ7 26792896
    92866 5f8k:2Q (2.8) BS03 MG ? GO:0000049 ... P60489 26792896
    92867 5f8k:2Q (2.8) BS04 MG ? GO:0000049 ... P60489 26792896
    92868 5f8k:2Q (2.8) BS05 MG ? GO:0000049 ... P60489 26792896
    92869 5f8k:2Q (2.8) BS06 MG ? GO:0000049 ... P60489 26792896
    92870 5f8k:2R (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 26792896
    92871 5f8k:2R (2.8) BS03 MG ? GO:0003735 ... Q9Z9H5 26792896
    92872 5f8k:2R (2.8) BS04 MG ? GO:0003735 ... Q9Z9H5 26792896
    92873 5f8k:2R (2.8) BS05 MG ? GO:0003735 ... Q9Z9H5 26792896
    92874 5f8k:2U (2.8) BS02 MG ? GO:0000027 ... P60491 26792896
    92875 5f8k:2U (2.8) BS03 MG ? GO:0000027 ... P60491 26792896
    92876 5f8k:2U (2.8) BS04 MG ? GO:0000027 ... P60491 26792896
    92877 5f8k:2U (2.8) BS05 MG ? GO:0000027 ... P60491 26792896
    92878 5f8k:2U (2.8) BS06 MG ? GO:0000027 ... P60491 26792896
    92879 5f8k:2V (2.8) BS02 MG ? GO:0003723 ... P60492 26792896
    92880 5f8k:2V (2.8) BS03 MG ? GO:0003723 ... P60492 26792896
    92881 5f8k:2V (2.8) BS04 MG ? GO:0003723 ... P60492 26792896
    92882 5f8k:2W (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 26792896
    92883 5f8k:2Y (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 26792896
    92884 5f8k:2b (2.8) BS02 MG ? GO:0003735 ... P80371 26792896
    92885 5f8k:2d (2.8) BS03 MG ? GO:0003723 ... P80373 26792896
    92886 5f8k:2d (2.8) BS04 MG ? GO:0003723 ... P80373 26792896
    92887 5f8k:2f (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 26792896
    92888 5f8k:2k (2.8) BS02 MG ? GO:0003735 ... P80376 26792896
    92889 5f8k:2l (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 26792896
    92890 5f8k:2m (2.8) BS02 MG ? GO:0000049 ... P80377 26792896
    92891 5f8k:2n (2.8) BS02 ZN N/A GO:0003735 ... N/A 26792896
    92892 5f8k:2n (2.8) BS03 MG N/A GO:0003735 ... N/A 26792896
    92893 5f8k:2t (2.8) BS02 MG ? GO:0003723 ... P80380 26792896
    92894 5f8l:A (2.812) BS03 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... E5RPG2 27339134
    92895 5f8m:A (2.83) BS03 MG 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... E5RPG2 27339134
    92896 5f8m:A (2.83) BS04 MG 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... E5RPG2 27339134
    92897 5f8m:A (2.83) BS05 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... E5RPG2 27339134
    92898 5f8n:A (2.484) BS03 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... E5RPG2 27339134
    92899 5f8p:A (2.2) BS03 FE2 1.14.11.-
    1.14.11.53    		 GO:0001659 ... Q9C0B1 N/A
    92900 5f98:A (3.28) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    92901 5f98:C (3.28) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    92902 5f98:E (3.28) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    92903 5f98:G (3.28) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    92904 5f98:I (3.28) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    92905 5f98:K (3.28) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    92906 5f9c:A (2.5) BS01 MG 5.4.2.2 GO:0000287 ... P36871 26972339
    92907 5f9f:A (2.601) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    92908 5f9f:C (2.601) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    92909 5f9f:E (2.601) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    92910 5f9f:G (2.601) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    92911 5f9f:I (2.601) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    92912 5f9f:K (2.601) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    92913 5f9h:A (3.1) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    92914 5f9h:A (3.1) BS03 MG 3.6.4.13 GO:0003676 ... O95786 26733676
    92915 5f9h:A (3.1) BS04 MG 3.6.4.13 GO:0003676 ... O95786 26733676
    92916 5f9h:C (3.1) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    92917 5f9h:E (3.1) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    92918 5f9h:G (3.1) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    92919 5f9h:G (3.1) BS03 MG 3.6.4.13 GO:0003676 ... O95786 26733676
    92920 5f9h:I (3.1) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    92921 5f9h:K (3.1) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    92922 5f9h:K (3.1) BS03 MG 3.6.4.13 GO:0003676 ... O95786 26733676
    92923 5f9k:B (2.179) BS02 MG 3.6.1.23 GO:0000287 ... Q54BW5 31910901
    92924 5f9k:B (2.179) BS03 MG 3.6.1.23 GO:0000287 ... Q54BW5 31910901
    92925 5f9l:A (2.592) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    92926 5f9l:A (2.592) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    92927 5f9n:A (2.23) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    92928 5f9n:A (2.23) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    92929 5f9y:A (2.8) BS03 ZN N/A GO:0000166 ... N/A N/A
    92930 5f9y:B (2.8) BS03 ZN N/A GO:0000166 ... N/A N/A
    92931 5f9z:A (2.4) BS03 ZN N/A GO:0000166 ... N/A N/A
    92932 5f9z:B (2.4) BS03 ZN N/A GO:0000166 ... N/A N/A
    92933 5fa8:A (1.3) BS02 MG ? GO:0005840 ... C3MWA1 27329856
    92934 5fad:A (1.87) BS02 MG ? GO:0005840 ... C3MWA1 27329856
    92935 5fae:A (1.7) BS01 CA ? GO:0051015 ... P06396 27633054
    92936 5faf:A (1.05) BS01 CA ? GO:0051015 ... P06396 27633054
    92937 5faq:B (1.96) BS01 CO 3.5.2.6 GO:0008658 ... Q6XEC0 26731698
    92938 5faq:B (1.96) BS02 CO 3.5.2.6 GO:0008658 ... Q6XEC0 26731698
    92939 5fas:A (1.74) BS02 CO 3.5.2.6 GO:0008658 ... Q6XEC0 26731698
    92940 5fas:A (1.74) BS03 CO 3.5.2.6 GO:0008658 ... Q6XEC0 26731698
    92941 5fas:B (1.74) BS01 CO 3.5.2.6 GO:0008658 ... Q6XEC0 26731698
    92942 5fat:A (2.09) BS02 CO 3.5.2.6 GO:0008658 ... Q6XEC0 26731698
    92943 5fat:B (2.09) BS01 CO 3.5.2.6 GO:0008658 ... Q6XEC0 26731698
    92944 5fat:B (2.09) BS03 CO 3.5.2.6 GO:0008658 ... Q6XEC0 26731698
    92945 5fax:A (2.0) BS01 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    92946 5fax:A (2.0) BS02 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    92947 5fax:A (2.0) BS03 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    92948 5fax:B (2.0) BS01 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    92949 5fax:B (2.0) BS02 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    92950 5fax:B (2.0) BS03 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    92951 5fb0:A (2.702) BS02 ZN ? N/A P23497 27129259
    92952 5fb0:A (2.702) BS03 ZN ? N/A P23497 27129259
    92953 5fb0:C (2.702) BS02 ZN ? N/A P23497 27129259
    92954 5fb0:C (2.702) BS03 ZN ? N/A P23497 27129259
    92955 5fb1:A (2.1) BS02 ZN ? N/A P23497 27129259
    92956 5fb1:A (2.1) BS03 ZN ? N/A P23497 27129259
    92957 5fb3:A (2.45) BS01 ZN 1.1.1.261 GO:0005737 ... A3MTM6 27616573
    92958 5fb3:B (2.45) BS01 ZN 1.1.1.261 GO:0005737 ... A3MTM6 27616573
    92959 5fb3:C (2.45) BS01 ZN 1.1.1.261 GO:0005737 ... A3MTM6 27616573
    92960 5fb3:D (2.45) BS02 ZN 1.1.1.261 GO:0005737 ... A3MTM6 27616573
    92961 5fb3:E (2.45) BS02 ZN 1.1.1.261 GO:0005737 ... A3MTM6 27616573
    92962 5fb3:F (2.45) BS02 ZN 1.1.1.261 GO:0005737 ... A3MTM6 27616573
    92963 5fb9:A (1.5) BS01 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92964 5fb9:A (1.5) BS02 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92965 5fb9:A (1.5) BS03 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92966 5fb9:B (1.5) BS01 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92967 5fb9:B (1.5) BS02 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92968 5fb9:B (1.5) BS03 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92969 5fba:A (1.8) BS01 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92970 5fba:A (1.8) BS02 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92971 5fba:A (1.8) BS03 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92972 5fbb:A (1.75) BS01 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92973 5fbb:A (1.75) BS02 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92974 5fbb:A (1.75) BS03 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92975 5fbb:A (1.75) BS06 CA 3.1.30.1 GO:0003676 ... P24021 28036383
    92976 5fbb:B (1.75) BS01 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92977 5fbb:B (1.75) BS02 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92978 5fbb:B (1.75) BS03 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92979 5fbb:B (1.75) BS06 CA 3.1.30.1 GO:0003676 ... P24021 28036383
    92980 5fbc:A (1.75) BS01 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92981 5fbc:A (1.75) BS02 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92982 5fbc:A (1.75) BS03 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92983 5fbd:A (1.75) BS01 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92984 5fbd:A (1.75) BS02 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92985 5fbd:A (1.75) BS03 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92986 5fbf:A (1.04) BS01 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92987 5fbf:A (1.04) BS02 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92988 5fbf:A (1.04) BS03 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92989 5fbg:A (1.97) BS01 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92990 5fbg:A (1.97) BS02 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92991 5fbg:A (1.97) BS03 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92992 5fbg:B (1.97) BS01 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92993 5fbg:B (1.97) BS02 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92994 5fbg:B (1.97) BS03 ZN 3.1.30.1 GO:0003676 ... P24021 28036383
    92995 5fbh:A (2.7) BS01 MG ? GO:0004930 ... P41180 27386547
    92996 5fbh:B (2.7) BS01 MG ? GO:0004930 ... P41180 27386547
    92997 5fbj:A (2.42) BS03 ZN 1.14.11.73
    3.4.-.-    		 N/A Q8N371 N/A
    92998 5fbk:A (2.1) BS03 MG ? GO:0004930 ... P41180 27386547
    92999 5fbk:B (2.1) BS03 MG ? GO:0004930 ... P41180 27386547
    93000 5fbs:A (2.59) BS01 MG N/A GO:0005524 ... N/A 27103605
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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