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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    92401 5euj:J (2.15) BS03 MG 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    92402 5euj:K (2.15) BS01 MG 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    92403 5euj:L (2.15) BS02 MG 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    92404 5euj:M (2.15) BS01 MG 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    92405 5euj:N (2.15) BS02 MG 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    92406 5euj:O (2.15) BS01 MG 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    92407 5euj:P (2.15) BS02 MG 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    92408 5euj:Q (2.15) BS01 MG 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    92409 5euj:R (2.15) BS02 MG 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    92410 5euj:S (2.15) BS01 MG 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    92411 5euj:T (2.15) BS02 MG 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    92412 5euj:U (2.15) BS01 MG 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    92413 5euj:V (2.15) BS02 MG 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    92414 5euj:W (2.15) BS01 MG 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    92415 5euj:X (2.15) BS02 MG 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    92416 5ev6:A (1.984) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 27303030
    92417 5ev6:A (1.984) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 27303030
    92418 5ev6:B (1.984) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 27303030
    92419 5ev6:B (1.984) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 27303030
    92420 5ev6:C (1.984) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 27303030
    92421 5ev6:C (1.984) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 27303030
    92422 5ev6:D (1.984) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 27303030
    92423 5ev6:D (1.984) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 27303030
    92424 5ev8:A (2.3) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 27303030
    92425 5ev8:A (2.3) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 27303030
    92426 5ev8:B (2.3) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 27303030
    92427 5ev8:B (2.3) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 27303030
    92428 5ev8:C (2.3) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 27303030
    92429 5ev8:C (2.3) BS03 ZN 3.5.2.6 GO:0008270 ... P52699 27303030
    92430 5ev8:D (2.3) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 27303030
    92431 5ev8:D (2.3) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 27303030
    92432 5evb:A (1.841) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 27303030
    92433 5evb:A (1.841) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 27303030
    92434 5evd:A (1.8) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 27303030
    92435 5evd:A (1.8) BS03 ZN 3.5.2.6 GO:0008270 ... P52700 27303030
    92436 5evk:A (1.627) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 27303030
    92437 5evk:A (1.627) BS03 ZN 3.5.2.6 GO:0008270 ... P52700 27303030
    92438 5ew0:A (1.3) BS01 ZN 3.5.2.6 GO:0008270 ... Q9RMI1 27303030
    92439 5ew0:B (1.3) BS01 ZN 3.5.2.6 GO:0008270 ... Q9RMI1 27303030
    92440 5ewa:A (2.3) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 27303030
    92441 5ewa:A (2.3) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 27303030
    92442 5ewa:B (2.3) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 27303030
    92443 5ewa:B (2.3) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 27303030
    92444 5ewa:C (2.3) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 27303030
    92445 5ewa:C (2.3) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 27303030
    92446 5ewa:D (2.3) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 27303030
    92447 5ewa:D (2.3) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 27303030
    92448 5ewe:A (1.66) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 26740629
    92449 5ewe:A (1.66) BS05 CA 2.7.7.7 GO:0003684 ... Q9Y253 26740629
    92450 5ewf:A (1.782) BS03 CA 2.7.7.7 GO:0003684 ... Q9Y253 26740629
    92451 5ewg:A (1.75) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 26740629
    92452 5ewu:A (1.25) BS01 MG 6.6.1.1 GO:0009058 ... Q9FNB0 N/A
    92453 5ewu:A (1.25) BS02 MG 6.6.1.1 GO:0009058 ... Q9FNB0 N/A
    92454 5ewu:B (1.25) BS01 MG 6.6.1.1 GO:0009058 ... Q9FNB0 N/A
    92455 5ewu:B (1.25) BS02 MG 6.6.1.1 GO:0009058 ... Q9FNB0 N/A
    92456 5ex0:A (2.7) BS02 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 26929412
    92457 5ex0:A (2.7) BS03 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 26929412
    92458 5ex0:A (2.7) BS04 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 26929412
    92459 5ex2:A (1.294) BS01 MG 5.2.1.8 GO:0000413 ... C6XJ17 27276069
    92460 5ex2:A (1.294) BS02 MG 5.2.1.8 GO:0000413 ... C6XJ17 27276069
    92461 5ex2:B (1.294) BS01 CA 5.2.1.8 GO:0000413 ... C6XJ17 27276069
    92462 5ex3:A (2.408) BS02 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 26929412
    92463 5ex3:A (2.408) BS03 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 26929412
    92464 5ex3:A (2.408) BS04 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 26929412
    92465 5ex4:A (2.25) BS01 MN 2.5.1.54 GO:0003849 ... O53512 N/A
    92466 5ex4:B (2.25) BS02 MN 2.5.1.54 GO:0003849 ... O53512 N/A
    92467 5exa:B (1.95) BS02 MG ? GO:0000122 ... P63104 26644359
    92468 5exc:E (2.14) BS01 MG ? GO:0008218 ... Q8T6U0 27487823
    92469 5exc:E (2.14) BS02 MG ? GO:0008218 ... Q8T6U0 27487823
    92470 5exc:F (2.14) BS01 MG ? GO:0008218 ... Q8T6U0 27487823
    92471 5exc:G (2.14) BS01 MG ? GO:0008218 ... Q8T6U0 27487823
    92472 5exc:H (2.14) BS01 MG ? GO:0008218 ... Q8T6U0 27487823
    92473 5exc:H (2.14) BS02 MG ? GO:0008218 ... Q8T6U0 27487823
    92474 5exc:H (2.14) BS03 MG ? GO:0008218 ... Q8T6U0 27487823
    92475 5exc:ee (2.14) BS01 MG ? GO:0006091 ... Q8T6U0 27487823
    92476 5exc:ff (2.14) BS01 MG ? GO:0006091 ... Q8T6U0 27487823
    92477 5exc:gg (2.14) BS01 MG ? GO:0006091 ... Q8T6U0 27487823
    92478 5exc:hh (2.14) BS01 MG ? GO:0006091 ... Q8T6U0 27487823
    92479 5exc:hh (2.14) BS02 MG ? GO:0006091 ... Q8T6U0 27487823
    92480 5exc:hh (2.14) BS03 MG ? GO:0006091 ... Q8T6U0 27487823
    92481 5exc:hh (2.14) BS04 MG ? GO:0006091 ... Q8T6U0 27487823
    92482 5exd:C (2.5) BS03 MG 1.2.7.10 GO:0003824 ... Q2RI42 26712008
    92483 5exd:F (2.5) BS03 MG 1.2.7.10 GO:0003824 ... Q2RI42 26712008
    92484 5exd:I (2.5) BS03 MG 1.2.7.10 GO:0003824 ... Q2RI42 26712008
    92485 5exd:L (2.5) BS03 MG 1.2.7.10 GO:0003824 ... Q2RI42 26712008
    92486 5exe:C (1.88) BS03 MG 1.2.7.10 GO:0003824 ... Q2RI42 26712008
    92487 5exe:C (1.88) BS04 MG 1.2.7.10 GO:0003824 ... Q2RI42 26712008
    92488 5exe:F (1.88) BS03 MG 1.2.7.10 GO:0003824 ... Q2RI42 26712008
    92489 5exh:C (1.3) BS03 ZN 1.14.11.80 GO:0003677 ... Q8BG87 26774490
    92490 5exh:C (1.3) BS04 ZN 1.14.11.80 GO:0003677 ... Q8BG87 26774490
    92491 5exr:A (3.6) BS01 ZN 2.7.7.102 GO:0000287 ... P49642 26975377
    92492 5exr:C (3.6) BS01 ZN 2.7.7.7 GO:0000166 ... P09884 26975377
    92493 5exr:C (3.6) BS02 ZN 2.7.7.7 GO:0000166 ... P09884 26975377
    92494 5exr:E (3.6) BS01 ZN 2.7.7.102 GO:0000287 ... P49642 26975377
    92495 5exr:G (3.6) BS01 ZN 2.7.7.7 GO:0000166 ... P09884 26975377
    92496 5exr:G (3.6) BS02 ZN 2.7.7.7 GO:0000166 ... P09884 26975377
    92497 5eya:F (2.4) BS01 ZN 2.3.2.27
    6.3.2.n3    		 N/A Q14258 27425606
    92498 5eya:F (2.4) BS02 ZN 2.3.2.27
    6.3.2.n3    		 N/A Q14258 27425606
    92499 5eya:G (2.4) BS01 ZN 2.3.2.27
    6.3.2.n3    		 N/A Q14258 27425606
    92500 5eya:G (2.4) BS02 ZN 2.3.2.27
    6.3.2.n3    		 N/A Q14258 27425606
    92501 5eyg:A (2.2) BS01 CA 3.1.3.25 GO:0000166 ... Q2FVV7 26894675
    92502 5eyg:A (2.2) BS02 CA 3.1.3.25 GO:0000166 ... Q2FVV7 26894675
    92503 5eyg:B (2.2) BS01 CA 3.1.3.25 GO:0000166 ... Q2FVV7 26894675
    92504 5eyg:B (2.2) BS02 CA 3.1.3.25 GO:0000166 ... Q2FVV7 26894675
    92505 5eyh:A (2.5) BS01 CA 3.1.3.25 GO:0000166 ... Q2FVV7 26894675
    92506 5eyh:A (2.5) BS02 CA 3.1.3.25 GO:0000166 ... Q2FVV7 26894675
    92507 5eyh:B (2.5) BS01 CA 3.1.3.25 GO:0000166 ... Q2FVV7 26894675
    92508 5eyh:B (2.5) BS02 CA 3.1.3.25 GO:0000166 ... Q2FVV7 26894675
    92509 5eym:A (2.7) BS02 CA 2.7.12.2 GO:0000165 ... Q02750 27496137
    92510 5eym:B (2.7) BS01 CA 2.7.12.2 GO:0000165 ... Q02750 27496137
    92511 5eyx:A (2.25) BS03 CA ? GO:0005537 ... C0HJX1 26946944
    92512 5eyx:A (2.25) BS04 MN ? GO:0005537 ... C0HJX1 26946944
    92513 5eyx:B (2.25) BS03 CA ? GO:0005537 ... C0HJX1 26946944
    92514 5eyx:B (2.25) BS04 MN ? GO:0005537 ... C0HJX1 26946944
    92515 5eyy:A (1.902) BS03 CA ? GO:0005537 ... C0HJX1 26946944
    92516 5eyy:A (1.902) BS04 MN ? GO:0005537 ... C0HJX1 26946944
    92517 5ez5:A (2.4) BS01 MG 3.6.5.2 GO:0003924 ... P62491 N/A
    92518 5ez5:B (2.4) BS01 MG 3.6.5.2 GO:0003924 ... P62491 N/A
    92519 5ez6:B (1.8) BS01 MG 3.6.5.2 GO:0000902 ... P61586 N/A
    92520 5ez6:B (1.8) BS02 MG 3.6.5.2 GO:0000902 ... P61586 N/A
    92521 5ez6:B (1.8) BS03 MG 3.6.5.2 GO:0000902 ... P61586 N/A
    92522 5ezm:A (2.7) BS01 ZN 2.4.2.43 GO:0005886 ... Q1LDT6 26912703
    92523 5ezt:X (1.54) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004089 ... P00921 27292012
    92524 5ezw:A (1.65) BS01 FE2 1.13.11.20 GO:0005506 ... P21816 N/A
    92525 5ezy:A (2.05) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 28585532
    92526 5ezy:C (2.05) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 28585532
    92527 5f09:A (1.85) BS01 ZN 3.4.17.21 GO:0004180 ... Q04609 27208881
    92528 5f09:A (1.85) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 27208881
    92529 5f09:A (1.85) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 27208881
    92530 5f0e:B (1.74) BS01 CA ? N/A O08795 27462106
    92531 5f0e:B (1.74) BS02 CA ? N/A O08795 27462106
    92532 5f0p:B (2.78) BS02 ZN ? GO:0005515 ... O75436 27889239
    92533 5f13:A (2.393) BS01 MN 3.1.3.- GO:0005634 ... Q04371 27322068
    92534 5f13:B (2.393) BS01 MN 3.1.3.- GO:0005634 ... Q04371 27322068
    92535 5f13:C (2.393) BS01 MN 3.1.3.- GO:0005634 ... Q04371 27322068
    92536 5f1c:A (2.9) BS01 ZN ? GO:0001614 ... G3MM57 26804916
    92537 5f1c:B (2.9) BS02 ZN ? GO:0001614 ... G3MM57 26804916
    92538 5f1c:B (2.9) BS03 ZN ? GO:0001614 ... G3MM57 26804916
    92539 5f1c:C (2.9) BS03 ZN ? GO:0001614 ... G3MM57 26804916
    92540 5f1m:A (2.322) BS01 MN 3.1.3.16 GO:0004722 ... Q9RL81 27499528
    92541 5f1m:A (2.322) BS02 MN 3.1.3.16 GO:0004722 ... Q9RL81 27499528
    92542 5f1m:A (2.322) BS03 MN 3.1.3.16 GO:0004722 ... Q9RL81 27499528
    92543 5f24:A (2.5) BS01 CA 3.1.3.25 GO:0000166 ... Q2FVV7 26894675
    92544 5f24:A (2.5) BS02 CA 3.1.3.25 GO:0000166 ... Q2FVV7 26894675
    92545 5f24:B (2.5) BS01 CA 3.1.3.25 GO:0000166 ... Q2FVV7 26894675
    92546 5f24:B (2.5) BS02 CA 3.1.3.25 GO:0000166 ... Q2FVV7 26894675
    92547 5f2d:A (1.7) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    92548 5f2g:A (1.918) BS02 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    92549 5f2g:B (1.918) BS01 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    92550 5f2g:B (1.918) BS02 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    92551 5f2g:B (1.918) BS03 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    92552 5f2i:A (1.95) BS01 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    92553 5f2i:A (1.95) BS02 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    92554 5f2i:B (1.95) BS01 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    92555 5f2i:B (1.95) BS02 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    92556 5f2i:B (1.95) BS03 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    92557 5f2i:C (1.95) BS01 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    92558 5f2i:D (1.95) BS01 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    92559 5f2i:D (1.95) BS02 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    92560 5f2l:A (1.755) BS02 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    92561 5f2l:B (1.755) BS01 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    92562 5f2l:B (1.755) BS02 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    92563 5f2m:A (1.92) BS02 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    92564 5f2m:B (1.92) BS01 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    92565 5f2m:B (1.92) BS02 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    92566 5f2m:B (1.92) BS03 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    92567 5f2q:A (2.95) BS01 CA ? GO:0005576 ... P83519 N/A
    92568 5f2q:B (2.95) BS01 CA ? GO:0005576 ... P83519 N/A
    92569 5f2q:C (2.95) BS01 CA ? GO:0005576 ... P83519 N/A
    92570 5f2q:D (2.95) BS01 CA ? GO:0005576 ... P83519 N/A
    92571 5f2q:E (2.95) BS01 CA ? GO:0005576 ... P83519 N/A
    92572 5f2q:F (2.95) BS01 CA ? GO:0005576 ... P83519 N/A
    92573 5f2q:G (2.95) BS01 CA ? GO:0005576 ... P83519 N/A
    92574 5f2q:H (2.95) BS01 CA ? GO:0005576 ... P83519 N/A
    92575 5f2q:I (2.95) BS01 CA ? GO:0005576 ... P83519 N/A
    92576 5f2q:J (2.95) BS01 CA ? GO:0005576 ... P83519 N/A
    92577 5f2s:A (2.08) BS01 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 26741168
    92578 5f2s:A (2.08) BS02 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 26741168
    92579 5f2s:B (2.08) BS01 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 26741168
    92580 5f2s:B (2.08) BS02 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 26741168
    92581 5f2s:C (2.08) BS01 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 26741168
    92582 5f2s:C (2.08) BS02 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 26741168
    92583 5f2s:D (2.08) BS01 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 26741168
    92584 5f2s:D (2.08) BS02 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 26741168
    92585 5f2t:A (2.06) BS01 MG 2.3.1.265 GO:0005886 ... A0QWG5 26965057
    92586 5f2v:Q (2.8) BS02 MG 2.7.6.5 GO:0005524 ... O31611 26460002
    92587 5f2v:S (2.8) BS01 MG 2.7.6.5 GO:0005524 ... O31611 26460002
    92588 5f2v:T (2.8) BS02 MG 2.7.6.5 GO:0005524 ... O31611 26460002
    92589 5f2v:Y (2.8) BS02 MG 2.7.6.5 GO:0005524 ... O31611 26460002
    92590 5f2v:Z (2.8) BS02 MG 2.7.6.5 GO:0005524 ... O31611 26460002
    92591 5f2w:A (2.6) BS01 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 26741168
    92592 5f2w:A (2.6) BS02 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 26741168
    92593 5f2w:B (2.6) BS01 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 26741168
    92594 5f2w:B (2.6) BS02 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 26741168
    92595 5f2w:C (2.6) BS01 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 26741168
    92596 5f2w:C (2.6) BS02 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 26741168
    92597 5f2w:D (2.6) BS01 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 26741168
    92598 5f2w:D (2.6) BS02 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 26741168
    92599 5f32:A (2.05) BS01 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 26741168
    92600 5f32:A (2.05) BS02 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 26741168
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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