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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    92001 5ej8:C (1.34) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    92002 5ej8:C (1.34) BS03 MG 2.2.1.9 GO:0000287 ... P17109 27213829
    92003 5ej8:D (1.34) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    92004 5ej8:D (1.34) BS04 MG 2.2.1.9 GO:0000287 ... P17109 27213829
    92005 5ej8:E (1.34) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    92006 5ej8:E (1.34) BS03 MG 2.2.1.9 GO:0000287 ... P17109 27213829
    92007 5ej8:F (1.34) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    92008 5ej8:F (1.34) BS04 MG 2.2.1.9 GO:0000287 ... P17109 27213829
    92009 5ej8:G (1.34) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    92010 5ej8:G (1.34) BS03 MG 2.2.1.9 GO:0000287 ... P17109 27213829
    92011 5ej8:H (1.34) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    92012 5ej8:H (1.34) BS04 MG 2.2.1.9 GO:0000287 ... P17109 27213829
    92013 5ej9:A (1.72) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    92014 5ej9:B (1.72) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    92015 5ej9:C (1.72) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    92016 5ej9:D (1.72) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    92017 5ej9:E (1.72) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    92018 5ej9:F (1.72) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    92019 5ej9:G (1.72) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    92020 5ej9:H (1.72) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    92021 5eja:A (1.6) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    92022 5eja:B (1.6) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    92023 5eja:C (1.6) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    92024 5eja:D (1.6) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    92025 5eja:E (1.6) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    92026 5eja:F (1.6) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    92027 5eja:G (1.6) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    92028 5eja:H (1.6) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    92029 5ejk:A (3.8) BS06 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... P03354 26887497
    92030 5ejk:B (3.8) BS01 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... P03354 26887497
    92031 5ejk:C (3.8) BS02 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... P03354 26887497
    92032 5ejk:D (3.8) BS02 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... P03354 26887497
    92033 5ejk:E (3.8) BS05 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... P03354 26887497
    92034 5ejk:F (3.8) BS01 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... P03354 26887497
    92035 5ejk:G (3.8) BS02 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... P03354 26887497
    92036 5ejk:H (3.8) BS02 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... P03354 26887497
    92037 5ejm:A (1.72) BS02 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    92038 5ejm:B (1.72) BS03 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    92039 5ejm:C (1.72) BS02 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    92040 5ejm:D (1.72) BS03 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    92041 5ejm:E (1.72) BS02 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    92042 5ejm:F (1.72) BS03 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    92043 5ejm:G (1.72) BS02 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    92044 5ejm:H (1.72) BS03 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    92045 5ejz:B (2.94) BS03 MG ? GO:0006011 ... Q3J126 26958837
    92046 5ek8:A (2.7) BS01 FE2 ? GO:0016491 ... B7K2Q5 26667668
    92047 5ekb:A (2.074) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 27138102
    92048 5ekb:A (2.074) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 27138102
    92049 5eke:B (3.001) BS02 MG 2.4.-.- GO:0005886 ... Q55487 26729507
    92050 5eke:C (3.001) BS02 MG 2.4.-.- GO:0005886 ... Q55487 26729507
    92051 5ekh:A (1.34) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26692420
    92052 5ekj:A (1.129) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26692420
    92053 5ekk:A (2.1) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    92054 5ekl:A (2.1) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    92055 5ekm:A (1.33) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26692420
    92056 5ekp:B (3.194) BS02 MG 2.4.-.- GO:0005886 ... Q55487 26729507
    92057 5ekp:C (3.194) BS02 MG 2.4.-.- GO:0005886 ... Q55487 26729507
    92058 5eks:A (1.85) BS02 MG 4.2.3.4 GO:0000166 ... V5V8R5 N/A
    92059 5eks:B (1.85) BS02 MG 4.2.3.4 GO:0000166 ... V5V8R5 N/A
    92060 5el4:19 (3.15) BS03 MG ? GO:0002181 ... P60405 26791911
    92061 5el4:21 (3.15) BS02 MG ? GO:0003735 ... Q5SHN8 26791911
    92062 5el4:2A (3.15) BS02 MG ? GO:0003735 ... P80376 26791911
    92063 5el4:2I (3.15) BS02 MG ? GO:0003735 ... P80376 26791911
    92064 5el4:39 (3.15) BS02 MG ? GO:0003735 ... Q5SHN9 26791911
    92065 5el4:41 (3.15) BS03 MG ? GO:0000049 ... Q5SHQ0 26791911
    92066 5el4:45 (3.15) BS05 MG ? GO:0000049 ... P60489 26791911
    92067 5el4:5I (3.15) BS02 ZN N/A GO:0003735 ... N/A 26791911
    92068 5el5:11 (3.15) BS03 MG ? GO:0002181 ... P60405 26791911
    92069 5el5:11 (3.15) BS04 MG ? GO:0002181 ... P60405 26791911
    92070 5el5:21 (3.15) BS02 MG ? GO:0003735 ... Q5SHN8 26791911
    92071 5el5:29 (3.15) BS02 MG ? GO:0003735 ... Q5SHN8 26791911
    92072 5el5:2A (3.15) BS02 MG ? GO:0003735 ... P80376 26791911
    92073 5el5:2I (3.15) BS02 MG ? GO:0003735 ... P80376 26791911
    92074 5el5:39 (3.15) BS02 MG ? GO:0003735 ... Q5SHN9 26791911
    92075 5el5:41 (3.15) BS04 MG ? GO:0000049 ... Q5SHQ0 26791911
    92076 5el5:45 (3.15) BS05 MG ? GO:0000049 ... P60489 26791911
    92077 5el5:5A (3.15) BS02 ZN N/A GO:0003735 ... N/A 26791911
    92078 5el5:5E (3.15) BS02 MG ? GO:0003735 ... Q5SLP8 26791911
    92079 5el5:5I (3.15) BS02 MG N/A GO:0003735 ... N/A 26791911
    92080 5el5:5I (3.15) BS03 ZN N/A GO:0003735 ... N/A 26791911
    92081 5el5:88 (3.15) BS04 MG ? GO:0000049 ... P60489 26791911
    92082 5el5:BI (3.15) BS02 MG ? GO:0003723 ... P80380 26791911
    92083 5el5:C5 (3.15) BS02 MG ? GO:0003723 ... Q5SHP9 26791911
    92084 5el5:C5 (3.15) BS03 ZN ? GO:0003723 ... Q5SHP9 26791911
    92085 5el5:D8 (3.15) BS02 MG ? GO:0003723 ... P60492 26791911
    92086 5el5:G8 (3.15) BS02 ZN ? GO:0003723 ... Q5SHP9 26791911
    92087 5el6:19 (3.1) BS03 MG ? GO:0002181 ... P60405 26791911
    92088 5el6:21 (3.1) BS02 MG ? GO:0003735 ... Q5SHN8 26791911
    92089 5el6:2A (3.1) BS02 MG ? GO:0003735 ... P80376 26791911
    92090 5el6:2I (3.1) BS02 MG ? GO:0003735 ... P80376 26791911
    92091 5el6:39 (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 26791911
    92092 5el6:39 (3.1) BS03 MG ? GO:0003735 ... Q5SHN9 26791911
    92093 5el6:41 (3.1) BS04 MG ? GO:0000049 ... Q5SHQ0 26791911
    92094 5el6:45 (3.1) BS04 MG ? GO:0000049 ... P60489 26791911
    92095 5el6:5A (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 26791911
    92096 5el6:5E (3.1) BS02 MG ? GO:0003735 ... Q5SLP8 26791911
    92097 5el6:5I (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 26791911
    92098 5el6:C5 (3.1) BS02 MG ? GO:0003723 ... Q5SHP9 26791911
    92099 5el6:G8 (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 26791911
    92100 5el7:19 (3.15) BS03 MG ? GO:0002181 ... P60405 26791911
    92101 5el7:1I (3.15) BS02 MG ? GO:0000049 ... Q5SHN7 26791911
    92102 5el7:21 (3.15) BS02 MG ? GO:0003735 ... Q5SHN8 26791911
    92103 5el7:29 (3.15) BS02 MG ? GO:0003735 ... Q5SHN8 26791911
    92104 5el7:2A (3.15) BS02 MG ? GO:0003735 ... P80376 26791911
    92105 5el7:2I (3.15) BS02 MG ? GO:0003735 ... P80376 26791911
    92106 5el7:31 (3.15) BS02 MG ? GO:0003735 ... Q5SHN9 26791911
    92107 5el7:39 (3.15) BS02 MG ? GO:0003735 ... Q5SHN9 26791911
    92108 5el7:39 (3.15) BS03 MG ? GO:0003735 ... Q5SHN9 26791911
    92109 5el7:41 (3.15) BS04 MG ? GO:0000049 ... Q5SHQ0 26791911
    92110 5el7:41 (3.15) BS05 MG ? GO:0000049 ... Q5SHQ0 26791911
    92111 5el7:45 (3.15) BS03 MG ? GO:0000049 ... P60489 26791911
    92112 5el7:5A (3.15) BS02 ZN N/A GO:0003735 ... N/A 26791911
    92113 5el7:5E (3.15) BS02 MG ? GO:0003735 ... Q5SLP8 26791911
    92114 5el7:5I (3.15) BS02 MG N/A GO:0003735 ... N/A 26791911
    92115 5el7:5I (3.15) BS03 ZN N/A GO:0003735 ... N/A 26791911
    92116 5el7:E8 (3.15) BS02 MG ? GO:0003735 ... Q5SHP3 26791911
    92117 5elh:A (1.8) BS01 ZN ? GO:0046872 ... Q8BL48 26641712
    92118 5elh:A (1.8) BS02 ZN ? GO:0046872 ... Q8BL48 26641712
    92119 5elh:A (1.8) BS03 ZN ? GO:0046872 ... Q8BL48 26641712
    92120 5elh:B (1.8) BS02 ZN ? GO:0046872 ... Q8BL48 26641712
    92121 5elh:B (1.8) BS03 ZN ? GO:0046872 ... Q8BL48 26641712
    92122 5elh:B (1.8) BS04 ZN ? GO:0046872 ... Q8BL48 26641712
    92123 5elk:A (2.3) BS02 ZN ? GO:0046872 ... Q8BL48 26641712
    92124 5elk:A (2.3) BS03 ZN ? GO:0046872 ... Q8BL48 26641712
    92125 5elk:A (2.3) BS04 ZN ? GO:0046872 ... Q8BL48 26641712
    92126 5ely:A (1.81) BS01 ZN 3.4.17.21 GO:0004180 ... Q04609 27074627
    92127 5ely:A (1.81) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 27074627
    92128 5ely:A (1.81) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 27074627
    92129 5emc:A (2.3) BS03 ZN ? GO:0003700 ... P04150 N/A
    92130 5emc:A (2.3) BS04 ZN ? GO:0003700 ... P04150 N/A
    92131 5emc:B (2.3) BS03 ZN ? GO:0003700 ... P04150 N/A
    92132 5emc:B (2.3) BS04 ZN ? GO:0003700 ... P04150 N/A
    92133 5emi:A (1.12) BS01 ZN 3.5.1.28 GO:0008745 ... B2J2S4 26833702
    92134 5emp:A (2.3) BS03 ZN ? GO:0003700 ... P04150 N/A
    92135 5emp:A (2.3) BS04 ZN ? GO:0003700 ... P04150 N/A
    92136 5emp:B (2.3) BS03 ZN ? GO:0003700 ... P04150 N/A
    92137 5emp:B (2.3) BS04 ZN ? GO:0003700 ... P04150 N/A
    92138 5emq:A (2.3) BS03 ZN ? GO:0003700 ... P04150 N/A
    92139 5emq:A (2.3) BS04 ZN ? GO:0003700 ... P04150 N/A
    92140 5emq:B (2.3) BS03 ZN ? GO:0003700 ... P04150 N/A
    92141 5emq:B (2.3) BS04 ZN ? GO:0003700 ... P04150 N/A
    92142 5emt:A (1.5) BS01 CU 3.4.22.-
    3.9.1.-    		 GO:0000118 ... P49773 28739258
    92143 5emt:A (1.5) BS02 CU 3.4.22.-
    3.9.1.-    		 GO:0000118 ... P49773 28739258
    92144 5emt:B (1.5) BS01 CU 3.4.22.-
    3.9.1.-    		 GO:0000118 ... P49773 28739258
    92145 5emy:A (1.231) BS02 CA 3.2.1.1 GO:0003824 ... P04746 27000970
    92146 5enl:A (2.2) BS01 CA 4.2.1.11 GO:0000015 ... P00924 2007121
    92147 5env:A (3.0) BS01 ZN 1.1.1.1
    1.1.1.54
    1.1.1.78    		 GO:0000947 ... P00330 26743849
    92148 5env:A (3.0) BS02 ZN 1.1.1.1
    1.1.1.54
    1.1.1.78    		 GO:0000947 ... P00330 26743849
    92149 5env:B (3.0) BS01 ZN 1.1.1.1
    1.1.1.54
    1.1.1.78    		 GO:0000947 ... P00330 26743849
    92150 5env:B (3.0) BS02 ZN 1.1.1.1
    1.1.1.54
    1.1.1.78    		 GO:0000947 ... P00330 26743849
    92151 5eoi:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    92152 5eoi:A (1.8) BS02 CU 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    92153 5eoy:A (2.5) BS02 MG ? GO:0005524 ... G3XD28 27022027
    92154 5eoz:A (2.088) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 29957995
    92155 5eoz:A (2.088) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 29957995
    92156 5ep9:A (2.13) BS02 FE ? GO:0016491 ... Q9EYI0
    Q9RN67    		 27114534
    92157 5ep9:B (2.13) BS02 FE ? GO:0016491 ... Q9EYI0
    Q9RN67    		 27114534
    92158 5ep9:C (2.13) BS02 FE ? GO:0016491 ... Q9EYI0
    Q9RN67    		 27114534
    92159 5ep9:D (2.13) BS02 FE ? GO:0016491 ... Q9EYI0
    Q9RN67    		 27114534
    92160 5epa:A (2.24) BS01 FE ? GO:0016491 ... Q9RN60 27114534
    92161 5epa:B (2.24) BS01 FE ? GO:0016491 ... Q9RN60 27114534
    92162 5epa:C (2.24) BS01 FE ? GO:0016491 ... Q9RN60 27114534
    92163 5epa:D (2.24) BS01 FE ? GO:0016491 ... Q9RN60 27114534
    92164 5epa:E (2.24) BS01 FE ? GO:0016491 ... Q9RN60 27114534
    92165 5epa:F (2.24) BS01 FE ? GO:0016491 ... Q9RN60 27114534
    92166 5epc:A (1.85) BS01 MG 5.4.2.2 GO:0000287 ... P36871 26972339
    92167 5epc:B (1.85) BS01 MG 5.4.2.2 GO:0000287 ... P36871 26972339
    92168 5epn:A (2.3) BS01 ZN 3.6.4.13 GO:0006508 ... C1KIK8 26682473
    92169 5epv:A (2.51) BS02 MG 2.7.13.3 GO:0004673 ... Q2YKK7 26851072
    92170 5epv:B (2.51) BS02 MG 2.7.13.3 GO:0004673 ... Q2YKK7 26851072
    92171 5epy:A (2.3) BS01 ZN 3.6.4.13 GO:0006508 ... C1KIK8 26682473
    92172 5eq2:A (1.8) BS01 CA ? N/A A3CM52 26833566
    92173 5eq2:A (1.8) BS02 CA ? N/A A3CM52 26833566
    92174 5eq2:B (1.8) BS01 CA ? N/A A3CM52 26833566
    92175 5eq2:B (1.8) BS02 CA ? N/A A3CM52 26833566
    92176 5eq3:A (2.0) BS02 CA ? N/A A3CM52 26833566
    92177 5eq3:A (2.0) BS03 CA ? N/A A3CM52 26833566
    92178 5eq3:B (2.0) BS01 CA ? N/A A3CM52 26833566
    92179 5eq3:B (2.0) BS02 CA ? N/A A3CM52 26833566
    92180 5eq4:A (2.3) BS01 CA ? N/A A3CM52 26833566
    92181 5eq4:A (2.3) BS02 CA ? N/A A3CM52 26833566
    92182 5eq4:B (2.3) BS01 CA ? N/A A3CM52 26833566
    92183 5eq4:B (2.3) BS02 CA ? N/A A3CM52 26833566
    92184 5eq4:C (2.3) BS01 CA ? N/A A3CM52 26833566
    92185 5eq4:C (2.3) BS02 CA ? N/A A3CM52 26833566
    92186 5eq4:D (2.3) BS01 CA ? N/A A3CM52 26833566
    92187 5eq4:D (2.3) BS02 CA ? N/A A3CM52 26833566
    92188 5eq9:A (1.36) BS02 MG 3.1.3.15 GO:0004401 ... G7J7Q5 26994138
    92189 5eq9:B (1.36) BS02 MG 3.1.3.15 GO:0004401 ... G7J7Q5 26994138
    92190 5eq9:C (1.36) BS02 MG 3.1.3.15 GO:0004401 ... G7J7Q5 26994138
    92191 5eq9:D (1.36) BS02 MG 3.1.3.15 GO:0004401 ... G7J7Q5 26994138
    92192 5eqn:A (2.3) BS01 MG 1.14.11.- GO:0004497 ... Q0ZQ39 27139827
    92193 5eqn:B (2.3) BS01 MG 1.14.11.- GO:0004497 ... Q0ZQ39 27139827
    92194 5eqq:A (1.65) BS01 ZN 3.6.4.13 GO:0006508 ... C1KIK8 26682473
    92195 5eqr:A (1.96) BS02 ZN 3.6.4.13 GO:0006508 ... A0A0B4WYC6 27512818
    92196 5eqs:A (1.839) BS02 ZN 3.6.4.13 GO:0006508 ... A0A0B4WYC6 27512818
    92197 5equ:A (2.2) BS01 FE ? GO:0016491 ... Q9EYI0
    Q9RN67    		 27114534
    92198 5equ:B (2.2) BS01 FE ? GO:0016491 ... Q9EYI0
    Q9RN67    		 27114534
    92199 5equ:C (2.2) BS01 FE ? GO:0016491 ... Q9EYI0
    Q9RN67    		 27114534
    92200 5equ:D (2.2) BS01 FE ? GO:0016491 ... Q9EYI0
    Q9RN67    		 27114534
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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