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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    91601 5e67:A (2.2) BS03 MG ? GO:0004519 ... F7WD42 26705195
    91602 5e67:A (2.2) BS04 MG ? GO:0004519 ... F7WD42 26705195
    91603 5e68:A (1.58) BS01 ZN 4.4.1.21 GO:0005506 ... Q8Z4D7 N/A
    91604 5e68:B (1.58) BS02 ZN 4.4.1.21 GO:0005506 ... Q8Z4D7 N/A
    91605 5e69:A (1.85) BS03 ZN ? GO:0003700 ... P04150 29626214
    91606 5e69:A (1.85) BS04 ZN ? GO:0003700 ... P04150 29626214
    91607 5e69:B (1.85) BS02 ZN ? GO:0003700 ... P04150 29626214
    91608 5e69:B (1.85) BS03 ZN ? GO:0003700 ... P04150 29626214
    91609 5e6a:A (2.197) BS03 ZN ? GO:0003700 ... P04150 29626214
    91610 5e6a:A (2.197) BS04 ZN ? GO:0003700 ... P04150 29626214
    91611 5e6a:B (2.197) BS02 ZN ? GO:0003700 ... P04150 29626214
    91612 5e6a:B (2.197) BS03 ZN ? GO:0003700 ... P04150 29626214
    91613 5e6b:A (2.25) BS03 ZN ? GO:0003700 ... P04150 29626214
    91614 5e6b:A (2.25) BS04 ZN ? GO:0003700 ... P04150 29626214
    91615 5e6b:B (2.25) BS02 ZN ? GO:0003700 ... P04150 29626214
    91616 5e6b:B (2.25) BS03 ZN ? GO:0003700 ... P04150 29626214
    91617 5e6c:A (2.2) BS03 ZN ? GO:0003700 ... P04150 29626214
    91618 5e6c:A (2.2) BS04 ZN ? GO:0003700 ... P04150 29626214
    91619 5e6c:B (2.2) BS02 ZN ? GO:0003700 ... P04150 29626214
    91620 5e6c:B (2.2) BS03 ZN ? GO:0003700 ... P04150 29626214
    91621 5e6d:A (2.4) BS03 ZN ? GO:0003700 ... P04150 29626214
    91622 5e6d:A (2.4) BS04 ZN ? GO:0003700 ... P04150 29626214
    91623 5e6d:B (2.4) BS02 ZN ? GO:0003700 ... P04150 29626214
    91624 5e6d:B (2.4) BS03 ZN ? GO:0003700 ... P04150 29626214
    91625 5e6f:A (2.6) BS01 MG ? GO:0000287 ... Q6VZ86 27013661
    91626 5e6f:B (2.6) BS01 MG ? GO:0000287 ... Q6VZ86 27013661
    91627 5e6h:A (2.238) BS01 MN 1.14.11.67 N/A P29375 26645689
    91628 5e6r:A (2.901) BS01 MG ? GO:0007155 ... P20701 26936951
    91629 5e6r:A (2.901) BS02 CA ? GO:0007155 ... P20701 26936951
    91630 5e6r:A (2.901) BS03 CA ? GO:0007155 ... P20701 26936951
    91631 5e6r:B (2.901) BS01 CA ? N/A P05107 26936951
    91632 5e6r:B (2.901) BS02 CA ? N/A P05107 26936951
    91633 5e6s:A (2.15) BS01 MG ? GO:0007155 ... P20701 26936951
    91634 5e6s:A (2.15) BS02 CA ? GO:0007155 ... P20701 26936951
    91635 5e6s:A (2.15) BS03 CA ? GO:0007155 ... P20701 26936951
    91636 5e6s:A (2.15) BS04 CA ? GO:0007155 ... P20701 26936951
    91637 5e6s:B (2.15) BS01 CA ? N/A P05107 26936951
    91638 5e6s:B (2.15) BS02 CA ? N/A P05107 26936951
    91639 5e6s:C (2.15) BS01 MG ? GO:0007155 ... P20701 26936951
    91640 5e6s:C (2.15) BS02 CA ? GO:0007155 ... P20701 26936951
    91641 5e6s:C (2.15) BS03 CA ? GO:0007155 ... P20701 26936951
    91642 5e6s:C (2.15) BS04 CA ? GO:0007155 ... P20701 26936951
    91643 5e6s:D (2.15) BS01 CA ? N/A P05107 26936951
    91644 5e6s:D (2.15) BS02 CA ? N/A P05107 26936951
    91645 5e6s:E (2.15) BS01 MG ? GO:0007155 ... P20701 26936951
    91646 5e6s:E (2.15) BS02 CA ? GO:0007155 ... P20701 26936951
    91647 5e6s:E (2.15) BS03 CA ? GO:0007155 ... P20701 26936951
    91648 5e6s:E (2.15) BS04 CA ? GO:0007155 ... P20701 26936951
    91649 5e6s:F (2.15) BS01 CA ? N/A P05107 26936951
    91650 5e6s:F (2.15) BS02 CA ? N/A P05107 26936951
    91651 5e6t:B (2.27) BS01 ZN ? N/A E6Y5B1 26599362
    91652 5e6t:B (2.27) BS02 ZN ? N/A E6Y5B1 26599362
    91653 5e6u:A (2.5) BS01 MG ? GO:0007155 ... P20701 26936951
    91654 5e6u:A (2.5) BS02 CA ? GO:0007155 ... P20701 26936951
    91655 5e6u:A (2.5) BS03 CA ? GO:0007155 ... P20701 26936951
    91656 5e6u:B (2.5) BS01 MG ? N/A P05107 26936951
    91657 5e6u:B (2.5) BS02 CA ? N/A P05107 26936951
    91658 5e6u:B (2.5) BS03 CA ? N/A P05107 26936951
    91659 5e79:A (3.5) BS02 FE2 1.10.3.9 GO:0005506 ... P0A444 26863980
    91660 5e79:D (3.5) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 26863980
    91661 5e79:J (3.5) BS01 MG ? GO:0009523 ... P59087 26863980
    91662 5e79:O (3.5) BS01 CA ? GO:0009523 ... P0A431 26863980
    91663 5e79:a (3.5) BS02 FE2 1.10.3.9 GO:0005506 ... P0A444 26863980
    91664 5e79:d (3.5) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 26863980
    91665 5e79:j (3.5) BS01 MG ? GO:0009523 ... P59087 26863980
    91666 5e79:o (3.5) BS01 CA ? GO:0009523 ... P0A431 26863980
    91667 5e7c:A (4.5) BS07 FE2 1.10.3.9 GO:0005506 ... P0A444 26863980
    91668 5e7c:D (4.5) BS04 FE2 1.10.3.9 GO:0005506 ... Q8CM25 26863980
    91669 5e7c:J (4.5) BS02 MG ? GO:0009523 ... P59087 26863980
    91670 5e7c:O (4.5) BS01 CA ? GO:0009523 ... P0A431 26863980
    91671 5e7c:a (4.5) BS08 FE2 1.10.3.9 GO:0005506 ... P0A444 26863980
    91672 5e7c:d (4.5) BS06 FE2 1.10.3.9 GO:0005506 ... Q8CM25 26863980
    91673 5e7c:j (4.5) BS01 MG ? GO:0009523 ... P59087 26863980
    91674 5e7c:o (4.5) BS01 CA ? GO:0009523 ... P0A431 26863980
    91675 5e7g:A (2.37) BS02 CA ? GO:0009279 ... A7LXT4 27118585
    91676 5e7k:21 (3.2) BS02 MG ? GO:0003735 ... Q5SHN8 26791911
    91677 5e7k:29 (3.2) BS02 MG ? GO:0003735 ... Q5SHN8 26791911
    91678 5e7k:2A (3.2) BS02 MG ? GO:0003735 ... P80376 26791911
    91679 5e7k:2I (3.2) BS02 MG ? GO:0003735 ... P80376 26791911
    91680 5e7k:39 (3.2) BS02 MG ? GO:0003735 ... Q5SHN9 26791911
    91681 5e7k:3I (3.2) BS02 MG ? GO:0000049 ... Q5SHN3 26791911
    91682 5e7k:41 (3.2) BS04 MG ? GO:0000049 ... Q5SHQ0 26791911
    91683 5e7k:5A (3.2) BS02 ZN N/A GO:0003735 ... N/A 26791911
    91684 5e7k:5I (3.2) BS02 ZN N/A GO:0003735 ... N/A 26791911
    91685 5e7k:88 (3.2) BS04 MG ? GO:0000049 ... P60489 26791911
    91686 5e7k:88 (3.2) BS05 MG ? GO:0000049 ... P60489 26791911
    91687 5e7k:C5 (3.2) BS02 MG ? GO:0003723 ... Q5SHP9 26791911
    91688 5e7k:G8 (3.2) BS02 ZN ? GO:0003723 ... Q5SHP9 26791911
    91689 5e7z:A (2.4) BS01 MN 2.5.1.54 GO:0003849 ... O53512 27128682
    91690 5e7z:B (2.4) BS01 MN 2.5.1.54 GO:0003849 ... O53512 27128682
    91691 5e81:2A (2.95) BS02 MG ? GO:0003735 ... P80376 26791911
    91692 5e81:2I (2.95) BS02 MG ? GO:0003735 ... P80376 26791911
    91693 5e81:39 (2.95) BS02 MG ? GO:0003735 ... Q5SHN9 26791911
    91694 5e81:39 (2.95) BS03 MG ? GO:0003735 ... Q5SHN9 26791911
    91695 5e81:41 (2.95) BS04 MG ? GO:0000049 ... Q5SHQ0 26791911
    91696 5e81:42 (2.95) BS03 MG ? GO:0003723 ... Q5SHQ5 26791911
    91697 5e81:5A (2.95) BS02 ZN ? GO:0003735 ... P0DOY6 26791911
    91698 5e81:5E (2.95) BS02 MG ? GO:0003735 ... Q5SLP8 26791911
    91699 5e81:5I (2.95) BS02 MG ? GO:0003735 ... P0DOY6 26791911
    91700 5e81:5I (2.95) BS03 ZN ? GO:0003735 ... P0DOY6 26791911
    91701 5e81:88 (2.95) BS04 MG ? GO:0000049 ... P60489 26791911
    91702 5e81:B5 (2.95) BS02 MG ? GO:0000027 ... Q5SHP0 26791911
    91703 5e81:B5 (2.95) BS03 MG ? GO:0000027 ... Q5SHP0 26791911
    91704 5e81:E5 (2.95) BS03 MG ? GO:0003735 ... P60493 26791911
    91705 5e81:M5 (2.95) BS02 MG ? GO:0003735 ... Q5SKU1 26791911
    91706 5e84:A (2.99) BS02 MG 3.6.4.10 GO:0005509 ... P11021 26655470
    91707 5e84:A (2.99) BS03 MG 3.6.4.10 GO:0005509 ... P11021 26655470
    91708 5e84:A (2.99) BS04 ZN 3.6.4.10 GO:0005509 ... P11021 26655470
    91709 5e84:B (2.99) BS02 ZN 3.6.4.10 GO:0005509 ... P11021 26655470
    91710 5e84:B (2.99) BS03 MG 3.6.4.10 GO:0005509 ... P11021 26655470
    91711 5e84:B (2.99) BS04 MG 3.6.4.10 GO:0005509 ... P11021 26655470
    91712 5e84:C (2.99) BS02 MG 3.6.4.10 GO:0005509 ... P11021 26655470
    91713 5e84:C (2.99) BS03 ZN 3.6.4.10 GO:0005509 ... P11021 26655470
    91714 5e84:D (2.99) BS02 MG 3.6.4.10 GO:0005509 ... P11021 26655470
    91715 5e84:D (2.99) BS03 MG 3.6.4.10 GO:0005509 ... P11021 26655470
    91716 5e84:D (2.99) BS04 ZN 3.6.4.10 GO:0005509 ... P11021 26655470
    91717 5e84:E (2.99) BS02 MG 3.6.4.10 GO:0005509 ... P11021 26655470
    91718 5e84:E (2.99) BS03 ZN 3.6.4.10 GO:0005509 ... P11021 26655470
    91719 5e84:F (2.99) BS02 MG 3.6.4.10 GO:0005509 ... P11021 26655470
    91720 5e84:F (2.99) BS03 ZN 3.6.4.10 GO:0005509 ... P11021 26655470
    91721 5e8c:A (2.9) BS01 ZN ? GO:0046765 ... G3G955 26711332
    91722 5e8g:A (2.7) BS01 CO ? GO:0003700 ... Q01543 26618620
    91723 5e8g:B (2.7) BS01 CO ? GO:0003700 ... Q01543 26618620
    91724 5e8g:C (2.7) BS01 CO ? GO:0003700 ... Q01543 26618620
    91725 5e8g:D (2.7) BS01 CO ? GO:0003700 ... Q01543 26618620
    91726 5e92:A (2.08) BS02 MG 2.7.11.30 GO:0004672 ... P37173 27139629
    91727 5e9a:A (2.561) BS01 ZN 3.2.1.23 GO:0004565 ... A0A0B4U8I5 26145832
    91728 5e9a:B (2.561) BS01 ZN 3.2.1.23 GO:0004565 ... A0A0B4U8I5 26145832
    91729 5e9a:C (2.561) BS01 ZN 3.2.1.23 GO:0004565 ... A0A0B4U8I5 26145832
    91730 5e9a:D (2.561) BS01 ZN 3.2.1.23 GO:0004565 ... A0A0B4U8I5 26145832
    91731 5e9a:E (2.561) BS01 ZN 3.2.1.23 GO:0004565 ... A0A0B4U8I5 26145832
    91732 5e9a:F (2.561) BS01 ZN 3.2.1.23 GO:0004565 ... A0A0B4U8I5 26145832
    91733 5e9e:A (2.4) BS02 ZN 2.7.11.7 GO:0004674 ... P42527 27211275
    91734 5e9e:B (2.4) BS02 ZN 2.7.11.7 GO:0004674 ... P42527 27211275
    91735 5e9f:A (2.8) BS01 MG 4.1.3.1
    4.1.3.30    		 GO:0003824 ... P0CT06 27016285
    91736 5e9f:B (2.8) BS01 MG 4.1.3.1
    4.1.3.30    		 GO:0003824 ... P0CT06 27016285
    91737 5e9f:C (2.8) BS01 MG 4.1.3.1
    4.1.3.30    		 GO:0003824 ... P0CT06 27016285
    91738 5e9f:D (2.8) BS01 MG 4.1.3.1
    4.1.3.30    		 GO:0003824 ... P0CT06 27016285
    91739 5e9n:A (0.95) BS01 CU 1.10.3.2 GO:0005507 ... I1VE66 29890251
    91740 5e9n:A (0.95) BS02 CU 1.10.3.2 GO:0005507 ... I1VE66 29890251
    91741 5e9n:A (0.95) BS03 CU 1.10.3.2 GO:0005507 ... I1VE66 29890251
    91742 5e9n:A (0.95) BS04 CU 1.10.3.2 GO:0005507 ... I1VE66 29890251
    91743 5e9s:A (2.8) BS02 NA ? GO:0015293 ... Q5JID0 27830699
    91744 5e9s:A (2.8) BS03 NA ? GO:0015293 ... Q5JID0 27830699
    91745 5e9s:A (2.8) BS04 NA ? GO:0015293 ... Q5JID0 27830699
    91746 5e9s:B (2.8) BS02 NA ? GO:0015293 ... Q5JID0 27830699
    91747 5e9s:B (2.8) BS03 NA ? GO:0015293 ... Q5JID0 27830699
    91748 5e9s:B (2.8) BS04 NA ? GO:0015293 ... Q5JID0 27830699
    91749 5e9s:C (2.8) BS02 NA ? GO:0015293 ... Q5JID0 27830699
    91750 5e9s:C (2.8) BS03 NA ? GO:0015293 ... Q5JID0 27830699
    91751 5e9s:C (2.8) BS04 NA ? GO:0015293 ... Q5JID0 27830699
    91752 5e9x:A (1.943) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    91753 5ean:A (2.36) BS03 CA 3.1.-.-
    3.6.4.12    		 GO:0000076 ... Q6ZQJ5 26491943
    91754 5eas:A (2.25) BS01 MG 4.2.3.61 GO:0000287 ... Q40577 9295271
    91755 5eas:A (2.25) BS02 MG 4.2.3.61 GO:0000287 ... Q40577 9295271
    91756 5eat:A (2.8) BS01 MG 4.2.3.61 GO:0000287 ... Q40577 9295271
    91757 5eat:A (2.8) BS02 MG 4.2.3.61 GO:0000287 ... Q40577 9295271
    91758 5eat:A (2.8) BS03 MG 4.2.3.61 GO:0000287 ... Q40577 9295271
    91759 5eau:A (2.15) BS01 MG 4.2.3.61 GO:0000287 ... Q40577 9295271
    91760 5eau:A (2.15) BS02 MG 4.2.3.61 GO:0000287 ... Q40577 9295271
    91761 5eb8:A (2.22) BS01 MG 3.2.1.8 GO:0004553 ... O30700 N/A
    91762 5eb8:B (2.22) BS01 MG 3.2.1.8 GO:0004553 ... O30700 N/A
    91763 5eba:A (2.3) BS01 MG 3.2.1.8 GO:0004553 ... O30700 N/A
    91764 5ebb:A (2.6) BS01 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... Q92484 26783088
    91765 5ebb:A (2.6) BS02 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... Q92484 26783088
    91766 5ebb:B (2.6) BS01 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... Q92484 26783088
    91767 5ebb:B (2.6) BS02 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... Q92484 26783088
    91768 5ebb:C (2.6) BS01 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... Q92484 26783088
    91769 5ebb:C (2.6) BS02 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... Q92484 26783088
    91770 5ebc:A (3.0) BS01 CA 3.6.-.- N/A P9WNR7 26841765
    91771 5ebe:A (3.0) BS01 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... Q92484 26783088
    91772 5ebe:A (3.0) BS02 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... Q92484 26783088
    91773 5ebe:B (3.0) BS01 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... Q92484 26783088
    91774 5ebe:B (3.0) BS02 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... Q92484 26783088
    91775 5ebe:C (3.0) BS01 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... Q92484 26783088
    91776 5ebe:C (3.0) BS02 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... Q92484 26783088
    91777 5ebt:A (2.24) BS03 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 26546219
    91778 5ebt:B (2.24) BS02 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 26546219
    91779 5ebt:C (2.24) BS03 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 26546219
    91780 5ebt:D (2.24) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 26546219
    91781 5ec3:A (2.1) BS01 CO 1.13.11.27 GO:0000139 ... P32754 N/A
    91782 5ecc:A (1.87) BS04 CA 1.5.1.3 GO:0000166 ... A4GRC7 27624966
    91783 5ecc:B (1.87) BS04 CA 1.5.1.3 GO:0000166 ... A4GRC7 27624966
    91784 5ecc:B (1.87) BS05 CA 1.5.1.3 GO:0000166 ... A4GRC7 27624966
    91785 5ece:A (2.2) BS02 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 26546219
    91786 5ece:B (2.2) BS02 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 26546219
    91787 5ece:C (2.2) BS02 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 26546219
    91788 5ece:D (2.2) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 26546219
    91789 5ecg:A (3.0) BS01 ZN ? GO:0000976 ... P04637 26628370
    91790 5ecg:B (3.0) BS01 ZN ? GO:0000976 ... P04637 26628370
    91791 5eci:A (1.56) BS03 MG 6.3.2.52 GO:0005515 ... Q9SKE2 28223489
    91792 5eci:D (1.56) BS03 MG 6.3.2.52 GO:0005515 ... Q9SKE2 28223489
    91793 5ecl:A (1.85) BS03 MG 6.3.2.52 GO:0005515 ... Q9SKE2 28223489
    91794 5ecl:D (1.85) BS03 MG 6.3.2.52 GO:0005515 ... Q9SKE2 28223489
    91795 5ecr:D (1.72) BS03 MG 6.3.2.52 GO:0005515 ... Q9SKE2 28223489
    91796 5ecu:A (1.5) BS01 CA 3.2.1.4 GO:0000272 ... A4XHB2 N/A
    91797 5ecv:A (2.085) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    91798 5ed1:A (2.77) BS04 ZN 3.5.4.37 GO:0003723 ... P78563 27065196
    91799 5ed1:D (2.77) BS02 ZN 3.5.4.37 GO:0003723 ... P78563 27065196
    91800 5ed2:A (2.95) BS04 ZN 3.5.4.37 GO:0003723 ... P78563 27065196
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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