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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    91401 5dzv:B (3.6) BS07 CA ? GO:0005509 ... Q91Y13 27161523
    91402 5dzv:B (3.6) BS08 CA ? GO:0005509 ... Q91Y13 27161523
    91403 5dzv:B (3.6) BS09 CA ? GO:0005509 ... Q91Y13 27161523
    91404 5dzv:B (3.6) BS10 CA ? GO:0005509 ... Q91Y13 27161523
    91405 5dzv:B (3.6) BS11 CA ? GO:0005509 ... Q91Y13 27161523
    91406 5dzv:B (3.6) BS12 CA ? GO:0005509 ... Q91Y13 27161523
    91407 5dzv:B (3.6) BS13 CA ? GO:0005509 ... Q91Y13 27161523
    91408 5dzw:A (2.43) BS02 CA ? GO:0005509 ... O88689 27161523
    91409 5dzw:A (2.43) BS03 CA ? GO:0005509 ... O88689 27161523
    91410 5dzw:A (2.43) BS04 CA ? GO:0005509 ... O88689 27161523
    91411 5dzw:A (2.43) BS05 CA ? GO:0005509 ... O88689 27161523
    91412 5dzw:A (2.43) BS06 CA ? GO:0005509 ... O88689 27161523
    91413 5dzw:A (2.43) BS07 CA ? GO:0005509 ... O88689 27161523
    91414 5dzw:A (2.43) BS08 CA ? GO:0005509 ... O88689 27161523
    91415 5dzw:A (2.43) BS09 CA ? GO:0005509 ... O88689 27161523
    91416 5dzw:A (2.43) BS10 CA ? GO:0005509 ... O88689 27161523
    91417 5dzx:A (2.879) BS01 CA ? GO:0005509 ... Q91XZ4 27161523
    91418 5dzx:A (2.879) BS02 CA ? GO:0005509 ... Q91XZ4 27161523
    91419 5dzx:A (2.879) BS03 CA ? GO:0005509 ... Q91XZ4 27161523
    91420 5dzx:A (2.879) BS04 CA ? GO:0005509 ... Q91XZ4 27161523
    91421 5dzx:A (2.879) BS05 CA ? GO:0005509 ... Q91XZ4 27161523
    91422 5dzx:A (2.879) BS06 CA ? GO:0005509 ... Q91XZ4 27161523
    91423 5dzx:A (2.879) BS07 CA ? GO:0005509 ... Q91XZ4 27161523
    91424 5dzx:A (2.879) BS08 CA ? GO:0005509 ... Q91XZ4 27161523
    91425 5dzx:A (2.879) BS09 CA ? GO:0005509 ... Q91XZ4 27161523
    91426 5dzx:B (2.879) BS01 CA ? GO:0005509 ... Q91XZ4 27161523
    91427 5dzx:B (2.879) BS02 CA ? GO:0005509 ... Q91XZ4 27161523
    91428 5dzx:B (2.879) BS03 CA ? GO:0005509 ... Q91XZ4 27161523
    91429 5dzx:B (2.879) BS04 CA ? GO:0005509 ... Q91XZ4 27161523
    91430 5dzx:B (2.879) BS05 CA ? GO:0005509 ... Q91XZ4 27161523
    91431 5dzx:B (2.879) BS06 CA ? GO:0005509 ... Q91XZ4 27161523
    91432 5dzx:B (2.879) BS07 CA ? GO:0005509 ... Q91XZ4 27161523
    91433 5dzx:B (2.879) BS08 CA ? GO:0005509 ... Q91XZ4 27161523
    91434 5dzx:B (2.879) BS09 CA ? GO:0005509 ... Q91XZ4 27161523
    91435 5dzy:A (2.9) BS02 CA ? GO:0005509 ... Q91XZ2 27161523
    91436 5dzy:A (2.9) BS03 CA ? GO:0005509 ... Q91XZ2 27161523
    91437 5dzy:A (2.9) BS04 CA ? GO:0005509 ... Q91XZ2 27161523
    91438 5dzy:A (2.9) BS05 CA ? GO:0005509 ... Q91XZ2 27161523
    91439 5dzy:A (2.9) BS06 CA ? GO:0005509 ... Q91XZ2 27161523
    91440 5dzy:A (2.9) BS07 CA ? GO:0005509 ... Q91XZ2 27161523
    91441 5dzy:A (2.9) BS08 CA ? GO:0005509 ... Q91XZ2 27161523
    91442 5dzy:A (2.9) BS09 CA ? GO:0005509 ... Q91XZ2 27161523
    91443 5dzy:A (2.9) BS10 CA ? GO:0005509 ... Q91XZ2 27161523
    91444 5dzy:B (2.9) BS02 CA ? GO:0005509 ... Q91XZ2 27161523
    91445 5dzy:B (2.9) BS03 CA ? GO:0005509 ... Q91XZ2 27161523
    91446 5dzy:B (2.9) BS04 CA ? GO:0005509 ... Q91XZ2 27161523
    91447 5dzy:B (2.9) BS05 CA ? GO:0005509 ... Q91XZ2 27161523
    91448 5dzy:B (2.9) BS06 CA ? GO:0005509 ... Q91XZ2 27161523
    91449 5dzy:B (2.9) BS07 CA ? GO:0005509 ... Q91XZ2 27161523
    91450 5dzy:B (2.9) BS08 CA ? GO:0005509 ... Q91XZ2 27161523
    91451 5dzy:B (2.9) BS09 CA ? GO:0005509 ... Q91XZ2 27161523
    91452 5dzy:B (2.9) BS10 CA ? GO:0005509 ... Q91XZ2 27161523
    91453 5dzy:C (2.9) BS02 CA ? GO:0005509 ... Q91XZ2 27161523
    91454 5dzy:C (2.9) BS03 CA ? GO:0005509 ... Q91XZ2 27161523
    91455 5dzy:C (2.9) BS04 CA ? GO:0005509 ... Q91XZ2 27161523
    91456 5dzy:C (2.9) BS05 CA ? GO:0005509 ... Q91XZ2 27161523
    91457 5dzy:C (2.9) BS06 CA ? GO:0005509 ... Q91XZ2 27161523
    91458 5dzy:C (2.9) BS07 CA ? GO:0005509 ... Q91XZ2 27161523
    91459 5dzy:C (2.9) BS08 CA ? GO:0005509 ... Q91XZ2 27161523
    91460 5dzy:C (2.9) BS09 CA ? GO:0005509 ... Q91XZ2 27161523
    91461 5dzy:C (2.9) BS10 CA ? GO:0005509 ... Q91XZ2 27161523
    91462 5dzy:D (2.9) BS03 CA ? GO:0005509 ... Q91XZ2 27161523
    91463 5dzy:D (2.9) BS04 CA ? GO:0005509 ... Q91XZ2 27161523
    91464 5dzy:D (2.9) BS05 CA ? GO:0005509 ... Q91XZ2 27161523
    91465 5dzy:D (2.9) BS06 CA ? GO:0005509 ... Q91XZ2 27161523
    91466 5dzy:D (2.9) BS07 CA ? GO:0005509 ... Q91XZ2 27161523
    91467 5dzy:D (2.9) BS08 CA ? GO:0005509 ... Q91XZ2 27161523
    91468 5dzy:D (2.9) BS09 CA ? GO:0005509 ... Q91XZ2 27161523
    91469 5dzy:D (2.9) BS10 CA ? GO:0005509 ... Q91XZ2 27161523
    91470 5dzy:D (2.9) BS11 CA ? GO:0005509 ... Q91XZ2 27161523
    91471 5dzy:E (2.9) BS01 CA ? GO:0005509 ... Q91XZ2 27161523
    91472 5dzy:E (2.9) BS02 CA ? GO:0005509 ... Q91XZ2 27161523
    91473 5dzy:E (2.9) BS03 CA ? GO:0005509 ... Q91XZ2 27161523
    91474 5dzy:E (2.9) BS04 CA ? GO:0005509 ... Q91XZ2 27161523
    91475 5dzy:E (2.9) BS05 CA ? GO:0005509 ... Q91XZ2 27161523
    91476 5dzy:E (2.9) BS06 CA ? GO:0005509 ... Q91XZ2 27161523
    91477 5dzy:E (2.9) BS07 CA ? GO:0005509 ... Q91XZ2 27161523
    91478 5dzy:E (2.9) BS08 CA ? GO:0005509 ... Q91XZ2 27161523
    91479 5dzy:E (2.9) BS09 CA ? GO:0005509 ... Q91XZ2 27161523
    91480 5dzy:F (2.9) BS02 CA ? GO:0005509 ... Q91XZ2 27161523
    91481 5dzy:F (2.9) BS03 CA ? GO:0005509 ... Q91XZ2 27161523
    91482 5dzy:F (2.9) BS04 CA ? GO:0005509 ... Q91XZ2 27161523
    91483 5dzy:F (2.9) BS05 CA ? GO:0005509 ... Q91XZ2 27161523
    91484 5dzy:F (2.9) BS06 CA ? GO:0005509 ... Q91XZ2 27161523
    91485 5dzy:F (2.9) BS07 CA ? GO:0005509 ... Q91XZ2 27161523
    91486 5dzy:F (2.9) BS08 CA ? GO:0005509 ... Q91XZ2 27161523
    91487 5dzy:F (2.9) BS09 CA ? GO:0005509 ... Q91XZ2 27161523
    91488 5dzy:F (2.9) BS10 CA ? GO:0005509 ... Q91XZ2 27161523
    91489 5e0f:A (1.4) BS02 CA 3.2.1.1 GO:0003824 ... P04746 N/A
    91490 5e0o:A (3.0) BS01 MG 3.1.3.12 GO:0000287 ... A8NS89 N/A
    91491 5e0y:A (2.001) BS01 ZN 2.7.11.1 N/A P9WI81 27601474
    91492 5e0y:A (2.001) BS02 ZN 2.7.11.1 N/A P9WI81 27601474
    91493 5e17:B (3.2) BS01 MG 2.7.7.6 GO:0000428 ... Q5SHR6 26941320
    91494 5e17:D (3.2) BS03 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 26941320
    91495 5e17:D (3.2) BS04 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 26941320
    91496 5e17:D (3.2) BS05 MG 2.7.7.6 GO:0000287 ... Q8RQE8 26941320
    91497 5e17:F (3.2) BS02 MG ? GO:0003677 ... Q5SKW1 26941320
    91498 5e18:B (3.3) BS01 MG 2.7.7.6 GO:0000428 ... Q5SHR6 26941320
    91499 5e18:D (3.3) BS04 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 26941320
    91500 5e18:D (3.3) BS05 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 26941320
    91501 5e18:D (3.3) BS06 MG 2.7.7.6 GO:0000287 ... Q8RQE8 26941320
    91502 5e18:F (3.3) BS02 MG ? GO:0003677 ... Q5SKW1 26941320
    91503 5e1j:A (3.308) BS01 CA ? GO:0000325 ... Q94KI8 26689363
    91504 5e1j:A (3.308) BS02 CA ? GO:0000325 ... Q94KI8 26689363
    91505 5e1k:A (1.0) BS01 CA ? GO:0005509 ... P07463 26894537
    91506 5e1k:A (1.0) BS02 CA ? GO:0005509 ... P07463 26894537
    91507 5e1k:A (1.0) BS03 CA ? GO:0005509 ... P07463 26894537
    91508 5e1k:A (1.0) BS04 CA ? GO:0005509 ... P07463 26894537
    91509 5e1n:A (1.0) BS01 CA ? GO:0005509 ... P07463 26894537
    91510 5e1n:A (1.0) BS02 CA ? GO:0005509 ... P07463 26894537
    91511 5e1n:A (1.0) BS03 CA ? GO:0005509 ... P07463 26894537
    91512 5e1n:A (1.0) BS04 CA ? GO:0005509 ... P07463 26894537
    91513 5e1p:A (1.01) BS01 CA ? GO:0005509 ... P07463 26894537
    91514 5e1p:A (1.01) BS02 CA ? GO:0005509 ... P07463 26894537
    91515 5e1p:A (1.01) BS03 CA ? GO:0005509 ... P07463 26894537
    91516 5e1p:A (1.01) BS04 CA ? GO:0005509 ... P07463 26894537
    91517 5e1q:A (1.943) BS03 CA 3.2.1.22 GO:0004557 ... Q8A6L0 28103425
    91518 5e1q:B (1.943) BS03 CA 3.2.1.22 GO:0004557 ... Q8A6L0 28103425
    91519 5e1r:A (2.651) BS01 CU ? N/A B3STU4 27128197
    91520 5e1r:B (2.651) BS01 CU ? N/A B3STU4 27128197
    91521 5e1r:C (2.651) BS01 CU ? N/A B3STU4 27128197
    91522 5e1r:D (2.651) BS01 CU ? N/A B3STU4 27128197
    91523 5e1r:E (2.651) BS01 CU ? N/A B3STU4 27128197
    91524 5e1r:F (2.651) BS01 CU ? N/A B3STU4 27128197
    91525 5e28:A (1.3) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26741028
    91526 5e2f:A (1.3) BS01 CA 3.5.2.6 GO:0008658 ... P54427 N/A
    91527 5e2j:A (2.1) BS01 CA 3.2.1.4 GO:0003824 ... Q9AJS0 26729722
    91528 5e2j:A (2.1) BS02 ZN 3.2.1.4 GO:0003824 ... Q9AJS0 26729722
    91529 5e2j:B (2.1) BS01 CA 3.2.1.4 GO:0003824 ... Q9AJS0 26729722
    91530 5e2j:B (2.1) BS02 ZN 3.2.1.4 GO:0003824 ... Q9AJS0 26729722
    91531 5e2k:A (1.4) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26741028
    91532 5e2l:A (2.5) BS01 MN 2.5.1.54 GO:0003849 ... O53512 27128682
    91533 5e2l:B (2.5) BS02 MN 2.5.1.54 GO:0003849 ... O53512 27128682
    91534 5e2m:A (1.41) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 28001003
    91535 5e2m:B (1.41) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 28001003
    91536 5e2n:A (1.53) BS01 ZN 4.2.1.1 GO:0004089 ... Q8N1Q1 28001003
    91537 5e2n:B (1.53) BS01 ZN 4.2.1.1 GO:0004089 ... Q8N1Q1 28001003
    91538 5e2q:A (2.404) BS02 MG 3.4.14.4 GO:0004177 ... Q9NY33 27025154
    91539 5e2r:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26497049
    91540 5e2s:A (1.5) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26741028
    91541 5e33:A (1.837) BS02 ZN 3.4.14.4 GO:0004177 ... Q9NY33 27025154
    91542 5e33:A (1.837) BS03 MG 3.4.14.4 GO:0004177 ... Q9NY33 27025154
    91543 5e33:A (1.837) BS04 MG 3.4.14.4 GO:0004177 ... Q9NY33 27025154
    91544 5e37:A (1.6) BS01 CA N/A GO:0005509 ... N/A 27297041
    91545 5e37:A (1.6) BS02 CA N/A GO:0005509 ... N/A 27297041
    91546 5e37:A (1.6) BS03 CA N/A GO:0005509 ... N/A 27297041
    91547 5e37:A (1.6) BS04 CA N/A GO:0005509 ... N/A 27297041
    91548 5e37:C (1.6) BS01 CA N/A GO:0005509 ... N/A 27297041
    91549 5e37:C (1.6) BS02 CA N/A GO:0005509 ... N/A 27297041
    91550 5e37:C (1.6) BS03 CA N/A GO:0005509 ... N/A 27297041
    91551 5e37:C (1.6) BS04 CA N/A GO:0005509 ... N/A 27297041
    91552 5e3a:A (2.05) BS02 ZN 3.4.14.4 GO:0004177 ... Q9NY33 27025154
    91553 5e3a:A (2.05) BS03 MG 3.4.14.4 GO:0004177 ... Q9NY33 27025154
    91554 5e3a:A (2.05) BS04 MG 3.4.14.4 GO:0004177 ... Q9NY33 27025154
    91555 5e3c:A (2.765) BS02 ZN 3.4.14.4 GO:0004177 ... Q9NY33 27025154
    91556 5e3c:A (2.765) BS03 MG 3.4.14.4 GO:0004177 ... Q9NY33 27025154
    91557 5e3f:A (1.75) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    91558 5e3h:A (2.7) BS03 ZN 3.6.4.13 GO:0003676 ... O95786 21947008
    91559 5e3t:A (3.3) BS02 MN 2.7.1.68 GO:0046488 ... Q503I3 27439870
    91560 5e3t:A (3.3) BS03 MN 2.7.1.68 GO:0046488 ... Q503I3 27439870
    91561 5e3u:A (3.6) BS02 MN 2.7.1.68 GO:0046488 ... Q503I3 27439870
    91562 5e3x:A (2.197) BS01 CO 3.4.17.19 GO:0004180 ... A0A140UHP3 26603937
    91563 5e40:A (2.05) BS01 MN 2.5.1.54 GO:0003849 ... O53512 27128682
    91564 5e40:B (2.05) BS02 MN 2.5.1.54 GO:0003849 ... O53512 27128682
    91565 5e41:A (1.8) BS03 MG 2.7.7.7 GO:0001882 ... P19821 27901305
    91566 5e41:A (1.8) BS04 MG 2.7.7.7 GO:0001882 ... P19821 27901305
    91567 5e4h:A (2.9) BS01 ZN 2.7.11.7 GO:0004674 ... P42527 27211275
    91568 5e4h:B (2.9) BS01 ZN 2.7.11.7 GO:0004674 ... P42527 27211275
    91569 5e4h:C (2.9) BS01 ZN 2.7.11.7 GO:0004674 ... P42527 27211275
    91570 5e4h:D (2.9) BS01 ZN 2.7.11.7 GO:0004674 ... P42527 27211275
    91571 5e4h:E (2.9) BS01 ZN 2.7.11.7 GO:0004674 ... P42527 27211275
    91572 5e4h:F (2.9) BS01 ZN 2.7.11.7 GO:0004674 ... P42527 27211275
    91573 5e4h:G (2.9) BS01 ZN 2.7.11.7 GO:0004674 ... P42527 27211275
    91574 5e4h:H (2.9) BS01 ZN 2.7.11.7 GO:0004674 ... P42527 27211275
    91575 5e4k:A (2.58) BS01 CA ? N/A Q9UBG0 27247422
    91576 5e4k:A (2.58) BS02 CA ? N/A Q9UBG0 27247422
    91577 5e4l:A (2.44) BS01 CA ? N/A Q9UBG0 N/A
    91578 5e4l:A (2.44) BS02 CA ? N/A Q9UBG0 N/A
    91579 5e4l:A (2.44) BS03 CA ? N/A Q9UBG0 N/A
    91580 5e4l:B (2.44) BS01 CA ? N/A Q9UBG0 N/A
    91581 5e4l:B (2.44) BS02 CA ? N/A Q9UBG0 N/A
    91582 5e4l:B (2.44) BS03 CA ? N/A Q9UBG0 N/A
    91583 5e4n:A (2.05) BS01 MN 2.5.1.54 GO:0003849 ... O53512 27128682
    91584 5e4n:B (2.05) BS02 MN 2.5.1.54 GO:0003849 ... O53512 27128682
    91585 5e4r:A (1.94) BS02 MG 1.1.1.383 GO:0004455 ... E0SRA9 26644020
    91586 5e4x:A (2.75) BS01 MG ? N/A O22265 26568381
    91587 5e5a:D (2.809) BS03 MG ? GO:0000786 ... P02281 26812545
    91588 5e5c:A (2.1) BS01 ZN 3.5.2.2 GO:0004157 ... Q9I676 27576201
    91589 5e5c:A (2.1) BS02 ZN 3.5.2.2 GO:0004157 ... Q9I676 27576201
    91590 5e5c:C (2.1) BS01 ZN 3.5.2.2 GO:0004157 ... Q9I676 27576201
    91591 5e5c:C (2.1) BS02 ZN 3.5.2.2 GO:0004157 ... Q9I676 27576201
    91592 5e5g:A (1.95) BS01 MN 2.5.1.54 GO:0003849 ... O53512 27128682
    91593 5e5g:B (1.95) BS02 MN 2.5.1.54 GO:0003849 ... O53512 27128682
    91594 5e5o:A (2.36) BS03 CA ? GO:0004519 ... F7WD42 26705195
    91595 5e5o:A (2.36) BS04 CA ? GO:0004519 ... F7WD42 26705195
    91596 5e5o:A (2.36) BS05 CA ? GO:0004519 ... F7WD42 26705195
    91597 5e5s:A (2.29) BS04 MG ? GO:0004519 ... F7WD42 26705195
    91598 5e5s:A (2.29) BS05 MG ? GO:0004519 ... F7WD42 26705195
    91599 5e63:A (2.6) BS05 MG ? GO:0004519 ... F7WD42 26705195
    91600 5e63:A (2.6) BS06 MG ? GO:0004519 ... F7WD42 26705195
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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