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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    91201 5doy:1V (2.6) BS02 MG ? GO:0003723 ... P60492 26028538
    91202 5doy:1V (2.6) BS03 MG ? GO:0003723 ... P60492 26028538
    91203 5doy:1V (2.6) BS04 MG ? GO:0003723 ... P60492 26028538
    91204 5doy:1V (2.6) BS05 MG ? GO:0003723 ... P60492 26028538
    91205 5doy:1V (2.6) BS06 MG ? GO:0003723 ... P60492 26028538
    91206 5doy:1W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 26028538
    91207 5doy:1W (2.6) BS03 MG ? GO:0003735 ... Q5SHP3 26028538
    91208 5doy:1W (2.6) BS04 MG ? GO:0003735 ... Q5SHP3 26028538
    91209 5doy:1W (2.6) BS05 MG ? GO:0003735 ... Q5SHP3 26028538
    91210 5doy:1W (2.6) BS06 MG ? GO:0003735 ... Q5SHP3 26028538
    91211 5doy:1X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 26028538
    91212 5doy:1X (2.6) BS03 MG ? GO:0000027 ... Q5SHP0 26028538
    91213 5doy:1X (2.6) BS04 MG ? GO:0000027 ... Q5SHP0 26028538
    91214 5doy:1X (2.6) BS05 MG ? GO:0000027 ... Q5SHP0 26028538
    91215 5doy:1X (2.6) BS06 MG ? GO:0000027 ... Q5SHP0 26028538
    91216 5doy:1Y (2.6) BS02 MG ? GO:0003723 ... Q5SHP9 26028538
    91217 5doy:1Y (2.6) BS03 ZN ? GO:0003723 ... Q5SHP9 26028538
    91218 5doy:1Y (2.6) BS04 MG ? GO:0003723 ... Q5SHP9 26028538
    91219 5doy:1b (2.6) BS02 MG ? GO:0003735 ... P80371 26028538
    91220 5doy:1b (2.6) BS03 MG ? GO:0003735 ... P80371 26028538
    91221 5doy:1d (2.6) BS03 MG ? GO:0003723 ... P80373 26028538
    91222 5doy:1e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 26028538
    91223 5doy:1e (2.6) BS03 MG ? GO:0003723 ... Q5SHQ5 26028538
    91224 5doy:1k (2.6) BS02 MG ? GO:0003735 ... P80376 26028538
    91225 5doy:1l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 26028538
    91226 5doy:1m (2.6) BS04 MG ? GO:0000049 ... P80377 26028538
    91227 5doy:1n (2.6) BS02 ZN N/A GO:0003735 ... N/A 26028538
    91228 5doy:1t (2.6) BS02 MG ? GO:0003723 ... P80380 26028538
    91229 5doy:23 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 26028538
    91230 5doy:24 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 26028538
    91231 5doy:25 (2.6) BS02 MG ? GO:0003735 ... P80339 26028538
    91232 5doy:25 (2.6) BS03 ZN ? GO:0003735 ... P80339 26028538
    91233 5doy:26 (2.6) BS02 ZN ? GO:0000049 ... P35871 26028538
    91234 5doy:29 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 26028538
    91235 5doy:2D (2.6) BS03 MG ? GO:0002181 ... P60405 26028538
    91236 5doy:2D (2.6) BS04 MG ? GO:0002181 ... P60405 26028538
    91237 5doy:2D (2.6) BS05 MG ? GO:0002181 ... P60405 26028538
    91238 5doy:2D (2.6) BS06 MG ? GO:0002181 ... P60405 26028538
    91239 5doy:2D (2.6) BS07 MG ? GO:0002181 ... P60405 26028538
    91240 5doy:2E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 26028538
    91241 5doy:2E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 26028538
    91242 5doy:2F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 26028538
    91243 5doy:2F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 26028538
    91244 5doy:2F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 26028538
    91245 5doy:2Q (2.6) BS04 MG ? GO:0000049 ... P60489 26028538
    91246 5doy:2Q (2.6) BS05 MG ? GO:0000049 ... P60489 26028538
    91247 5doy:2Q (2.6) BS06 MG ? GO:0000049 ... P60489 26028538
    91248 5doy:2U (2.6) BS02 MG ? GO:0000027 ... P60491 26028538
    91249 5doy:2U (2.6) BS03 MG ? GO:0000027 ... P60491 26028538
    91250 5doy:2V (2.6) BS02 MG ? GO:0003723 ... P60492 26028538
    91251 5doy:2V (2.6) BS03 MG ? GO:0003723 ... P60492 26028538
    91252 5doy:2V (2.6) BS04 MG ? GO:0003723 ... P60492 26028538
    91253 5doy:2W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 26028538
    91254 5doy:2W (2.6) BS03 MG ? GO:0003735 ... Q5SHP3 26028538
    91255 5doy:2Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 26028538
    91256 5doy:2Z (2.6) BS03 MG ? GO:0003723 ... Q5SHZ1 26028538
    91257 5doy:2d (2.6) BS03 MG ? GO:0003723 ... P80373 26028538
    91258 5doy:2e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 26028538
    91259 5doy:2f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 26028538
    91260 5doy:2k (2.6) BS02 MG ? GO:0003735 ... P80376 26028538
    91261 5doy:2l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 26028538
    91262 5doy:2n (2.6) BS02 ZN N/A GO:0003735 ... N/A 26028538
    91263 5doy:2q (2.6) BS02 MG N/A GO:0003735 ... N/A 26028538
    91264 5doy:2q (2.6) BS03 MG N/A GO:0003735 ... N/A 26028538
    91265 5doy:2t (2.6) BS02 MG ? GO:0003723 ... P80380 26028538
    91266 5dpe:E (1.34) BS02 ZN 3.4.24.27 GO:0004222 ... P00800 26376645
    91267 5dpe:E (1.34) BS03 CA 3.4.24.27 GO:0004222 ... P00800 26376645
    91268 5dpe:E (1.34) BS04 CA 3.4.24.27 GO:0004222 ... P00800 26376645
    91269 5dpe:E (1.34) BS05 CA 3.4.24.27 GO:0004222 ... P00800 26376645
    91270 5dpe:E (1.34) BS06 CA 3.4.24.27 GO:0004222 ... P00800 26376645
    91271 5dpf:E (1.47) BS02 ZN 3.4.24.27 GO:0004222 ... P00800 26376645
    91272 5dpf:E (1.47) BS03 CA 3.4.24.27 GO:0004222 ... P00800 26376645
    91273 5dpf:E (1.47) BS04 CA 3.4.24.27 GO:0004222 ... P00800 26376645
    91274 5dpf:E (1.47) BS05 CA 3.4.24.27 GO:0004222 ... P00800 26376645
    91275 5dpf:E (1.47) BS06 CA 3.4.24.27 GO:0004222 ... P00800 26376645
    91276 5dpn:A (1.6) BS05 CA ? N/A Q7WTN6 26451738
    91277 5dpx:A (1.85) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 28505394
    91278 5dpx:A (1.85) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 28505394
    91279 5dpx:B (1.85) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 28505394
    91280 5dpx:B (1.85) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 28505394
    91281 5dq0:A (1.8) BS01 ZN ? N/A O60462 N/A
    91282 5dq0:A (1.8) BS02 ZN ? N/A O60462 N/A
    91283 5dqg:A (2.29) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 27574558
    91284 5dqg:A (2.29) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 27574558
    91285 5dqh:A (1.99) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 27574558
    91286 5dqh:A (1.99) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 27574558
    91287 5dqi:A (2.3) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27574558
    91288 5dqi:A (2.3) BS05 CA 2.7.7.7 GO:0003684 ... Q9Y253 27574558
    91289 5dql:A (1.782) BS01 MG 4.1.3.1 GO:0003824 ... P9WKK7 28679637
    91290 5dqq:A (2.872) BS01 CA ? GO:0000325 ... Q94KI8 26961658
    91291 5dqq:A (2.872) BS02 CA ? GO:0000325 ... Q94KI8 26961658
    91292 5dqq:A (2.872) BS03 CA ? GO:0000325 ... Q94KI8 26961658
    91293 5dqz:B (2.7) BS03 MG 3.1.-.- GO:0003676 ... Q46896 26478180
    91294 5dqz:C (2.7) BS03 MG 3.1.-.- GO:0003676 ... Q46896 26478180
    91295 5dr2:A (2.46) BS02 MG 2.7.11.1 GO:0004672 ... O14965 27339427
    91296 5drc:A (2.18) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    91297 5drc:A (2.18) BS02 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    91298 5drd:A (2.13) BS01 MG 2.7.11.1 GO:0004672 ... O14965 27339427
    91299 5dri:A (2.8) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    91300 5dro:A (2.01) BS01 ZN 3.5.1.108 GO:0006796 ... O67648 26912110
    91301 5dro:B (2.01) BS01 ZN 3.5.1.108 GO:0006796 ... O67648 26912110
    91302 5drp:A (1.889) BS01 ZN 3.5.1.108 GO:0006796 ... O67648 26912110
    91303 5drp:B (1.889) BS01 ZN 3.5.1.108 GO:0006796 ... O67648 26912110
    91304 5drq:A (1.63) BS01 ZN 3.5.1.108 GO:0006796 ... P47205 26912110
    91305 5drq:A (1.63) BS02 ZN 3.5.1.108 GO:0006796 ... P47205 26912110
    91306 5drr:A (1.59) BS01 ZN 3.5.1.108 GO:0006796 ... P47205 26912110
    91307 5drr:A (1.59) BS02 ZN 3.5.1.108 GO:0006796 ... P47205 26912110
    91308 5drs:A (1.1) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 28001003
    91309 5drz:L (2.54) BS02 MG N/A N/A N/A 27827447
    91310 5ds0:A (2.8) BS01 CO ? GO:0004177 ... M7T295 N/A
    91311 5ds0:A (2.8) BS02 CO ? GO:0004177 ... M7T295 N/A
    91312 5ds0:B (2.8) BS01 CO ? GO:0004177 ... M7T295 N/A
    91313 5ds0:B (2.8) BS02 CO ? GO:0004177 ... M7T295 N/A
    91314 5ds0:C (2.8) BS01 CO ? GO:0004177 ... M7T295 N/A
    91315 5ds0:C (2.8) BS02 CO ? GO:0004177 ... M7T295 N/A
    91316 5ds0:D (2.8) BS01 CO ? GO:0004177 ... M7T295 N/A
    91317 5ds0:D (2.8) BS02 CO ? GO:0004177 ... M7T295 N/A
    91318 5ds0:E (2.8) BS01 CO ? GO:0004177 ... M7T295 N/A
    91319 5ds0:E (2.8) BS02 CO ? GO:0004177 ... M7T295 N/A
    91320 5ds0:F (2.8) BS01 CO ? GO:0004177 ... M7T295 N/A
    91321 5ds0:F (2.8) BS02 CO ? GO:0004177 ... M7T295 N/A
    91322 5ds0:G (2.8) BS01 CO ? GO:0004177 ... M7T295 N/A
    91323 5ds0:G (2.8) BS02 CO ? GO:0004177 ... M7T295 N/A
    91324 5ds0:H (2.8) BS01 CO ? GO:0004177 ... M7T295 N/A
    91325 5ds0:H (2.8) BS02 CO ? GO:0004177 ... M7T295 N/A
    91326 5ds0:I (2.8) BS01 CO ? GO:0004177 ... M7T295 N/A
    91327 5ds0:I (2.8) BS02 CO ? GO:0004177 ... M7T295 N/A
    91328 5ds0:J (2.8) BS01 CO ? GO:0004177 ... M7T295 N/A
    91329 5ds0:J (2.8) BS02 CO ? GO:0004177 ... M7T295 N/A
    91330 5ds0:K (2.8) BS01 CO ? GO:0004177 ... M7T295 N/A
    91331 5ds0:K (2.8) BS02 CO ? GO:0004177 ... M7T295 N/A
    91332 5ds0:L (2.8) BS01 CO ? GO:0004177 ... M7T295 N/A
    91333 5ds0:L (2.8) BS02 CO ? GO:0004177 ... M7T295 N/A
    91334 5ds5:B (2.951) BS02 MG 3.1.-.- GO:0003676 ... Q46896 26503043
    91335 5dsk:A (1.3) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 27114542
    91336 5dsl:A (1.45) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 27114542
    91337 5dsm:A (1.3) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 27114542
    91338 5dsu:A (1.93) BS01 CA ? GO:0005509 ... P0DP23 28288938
    91339 5dsu:A (1.93) BS02 CA ? GO:0005509 ... P0DP23 28288938
    91340 5dt3:A (2.33) BS01 MG 2.7.11.1 GO:0004672 ... O14965 27339427
    91341 5dt4:A (2.86) BS01 MG 2.7.11.1 GO:0004672 ... O14965 27339427
    91342 5dto:A (2.603) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q6YMS4 26578813
    91343 5dto:A (2.603) BS03 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q6YMS4 26578813
    91344 5dto:A (2.603) BS05 MG 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q6YMS4 26578813
    91345 5dtu:A (3.199) BS02 MG 3.6.4.13 GO:0003676 ... G0SBQ7 27139834
    91346 5duv:A (1.9) BS03 CA ? GO:0030246 ... P56470 26828567
    91347 5duv:B (1.9) BS03 CA ? GO:0030246 ... P56470 26828567
    91348 5duv:C (1.9) BS03 CA ? GO:0030246 ... P56470 26828567
    91349 5duv:D (1.9) BS03 CA ? GO:0030246 ... P56470 26828567
    91350 5dvx:A (1.598) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 27439028
    91351 5dvx:A (1.598) BS02 ZN 4.2.1.1 GO:0004089 ... Q16790 27439028
    91352 5dvx:B (1.598) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 27439028
    91353 5dvx:B (1.598) BS02 ZN 4.2.1.1 GO:0004089 ... Q16790 27439028
    91354 5dw8:A (2.4) BS01 CA N/A N/A N/A N/A
    91355 5dw8:A (2.4) BS03 CA N/A N/A N/A N/A
    91356 5dw8:B (2.4) BS01 CA N/A N/A N/A N/A
    91357 5dw8:B (2.4) BS02 CA N/A N/A N/A N/A
    91358 5dwk:C (2.601) BS07 ZN 2.7.1.107 GO:0004143 ... P0ABN1 26960129
    91359 5dx6:A (1.75) BS01 MG 2.2.1.6 GO:0000287 ... P27696 N/A
    91360 5dx6:A (1.75) BS02 MG 2.2.1.6 GO:0000287 ... P27696 N/A
    91361 5dx6:B (1.75) BS01 MG 2.2.1.6 GO:0000287 ... P27696 N/A
    91362 5dx6:B (1.75) BS02 MG 2.2.1.6 GO:0000287 ... P27696 N/A
    91363 5dx7:A (2.1) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    91364 5dx9:A (2.15) BS03 MG 2.4.1.15 GO:0003824 ... Q059G6 27307435
    91365 5dxi:A (2.0) BS03 MG 2.4.1.15 GO:0003824 ... Q5AI14 27307435
    91366 5dxi:B (2.0) BS03 MG 2.4.1.15 GO:0003824 ... Q5AI14 27307435
    91367 5dxn:A (1.65) BS01 MG 2.4.1.15 GO:0003824 ... Q4WWF5 27307435
    91368 5dxo:A (1.9) BS01 MG 2.4.1.15 GO:0003824 ... Q4WWF5 27307435
    91369 5dxo:B (1.9) BS01 MG 2.4.1.15 GO:0003824 ... Q4WWF5 27307435
    91370 5dy1:A (2.651) BS01 CA N/A GO:0003677 ... N/A 26744254
    91371 5dy1:B (2.651) BS01 CA N/A GO:0003677 ... N/A 26744254
    91372 5dy4:A (1.77) BS01 ZN 2.3.1.-
    2.3.1.286    		 GO:0017136 ... Q8IXJ6 26696402
    91373 5dy5:A (1.95) BS01 ZN 2.3.1.-
    2.3.1.286    		 GO:0017136 ... Q8IXJ6 26748890
    91374 5dyf:A (1.854) BS01 ZN 3.4.11.2 GO:0004177 ... Q9JYV4 N/A
    91375 5dyh:A (2.682) BS01 4TI ? GO:0005576 ... P02787 27070073
    91376 5dyh:B (2.682) BS01 4TI ? GO:0005576 ... P02787 27070073
    91377 5dyj:A (2.5) BS01 ZN 2.7.11.7 GO:0004674 ... P42527 27211275
    91378 5dyj:B (2.5) BS01 ZN 2.7.11.7 GO:0004674 ... P42527 27211275
    91379 5dz2:A (2.111) BS01 MG 4.1.99.16
    4.2.3.22
    4.2.3.75    		 N/A Q9X839 26598179
    91380 5dz2:B (2.111) BS01 MG 4.1.99.16
    4.2.3.22
    4.2.3.75    		 N/A Q9X839 26598179
    91381 5dzq:A (1.892) BS01 MG 2.4.2.30 GO:0005576 ... W2E3J5 26610041
    91382 5dzq:O (1.892) BS01 MG 2.4.2.30 GO:0005576 ... W2E3J5 26610041
    91383 5dzt:A (2.2) BS01 ZN ? GO:0000166 ... Q8KUA3 26226635
    91384 5dzv:A (3.6) BS01 CA ? GO:0005509 ... Q91Y13 27161523
    91385 5dzv:A (3.6) BS02 CA ? GO:0005509 ... Q91Y13 27161523
    91386 5dzv:A (3.6) BS03 CA ? GO:0005509 ... Q91Y13 27161523
    91387 5dzv:A (3.6) BS04 CA ? GO:0005509 ... Q91Y13 27161523
    91388 5dzv:A (3.6) BS05 CA ? GO:0005509 ... Q91Y13 27161523
    91389 5dzv:A (3.6) BS06 CA ? GO:0005509 ... Q91Y13 27161523
    91390 5dzv:A (3.6) BS07 CA ? GO:0005509 ... Q91Y13 27161523
    91391 5dzv:A (3.6) BS08 CA ? GO:0005509 ... Q91Y13 27161523
    91392 5dzv:A (3.6) BS09 CA ? GO:0005509 ... Q91Y13 27161523
    91393 5dzv:A (3.6) BS10 CA ? GO:0005509 ... Q91Y13 27161523
    91394 5dzv:A (3.6) BS11 CA ? GO:0005509 ... Q91Y13 27161523
    91395 5dzv:A (3.6) BS12 CA ? GO:0005509 ... Q91Y13 27161523
    91396 5dzv:B (3.6) BS02 CA ? GO:0005509 ... Q91Y13 27161523
    91397 5dzv:B (3.6) BS03 CA ? GO:0005509 ... Q91Y13 27161523
    91398 5dzv:B (3.6) BS04 CA ? GO:0005509 ... Q91Y13 27161523
    91399 5dzv:B (3.6) BS05 CA ? GO:0005509 ... Q91Y13 27161523
    91400 5dzv:B (3.6) BS06 CA ? GO:0005509 ... Q91Y13 27161523
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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