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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    91001 5dl8:A (2.2) BS01 CA ? GO:0015288 ... A0A0D5YI36 26805524
    91002 5dl8:A (2.2) BS02 CA ? GO:0015288 ... A0A0D5YI36 26805524
    91003 5dl8:B (2.2) BS02 CA ? GO:0015288 ... A0A0D5YI36 26805524
    91004 5dl8:B (2.2) BS03 CA ? GO:0015288 ... A0A0D5YI36 26805524
    91005 5dlf:A (1.97) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27574558
    91006 5dlg:A (2.351) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 27574558
    91007 5dlg:A (2.351) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 27574558
    91008 5dlh:A (2.2501) BS01 ZN 3.4.24.27 GO:0004222 ... P43133 N/A
    91009 5dlh:A (2.2501) BS02 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    91010 5dlh:A (2.2501) BS03 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    91011 5dlh:A (2.2501) BS04 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    91012 5dlh:A (2.2501) BS05 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    91013 5dll:A (2.51) BS01 ZN 3.4.11.2 GO:0004177 ... Q5NE65 N/A
    91014 5dlq:C (3.2) BS02 MG 3.6.5.- GO:0003924 ... P62826 27306458
    91015 5dlq:D (3.2) BS02 MG 3.6.5.- GO:0003924 ... P62826 27306458
    91016 5dlt:A (1.6) BS01 ZN 3.1.4.39 GO:0001953 ... Q64610 27075612
    91017 5dlt:A (1.6) BS02 ZN 3.1.4.39 GO:0001953 ... Q64610 27075612
    91018 5dlt:A (1.6) BS04 CA 3.1.4.39 GO:0001953 ... Q64610 27075612
    91019 5dlv:A (2.0) BS02 ZN 3.1.4.39 GO:0001953 ... Q64610 27075612
    91020 5dlv:A (2.0) BS03 ZN 3.1.4.39 GO:0001953 ... Q64610 27075612
    91021 5dlv:A (2.0) BS04 CA 3.1.4.39 GO:0001953 ... Q64610 27075612
    91022 5dlv:B (2.0) BS02 ZN 3.1.4.39 GO:0001953 ... Q64610 27075612
    91023 5dlv:B (2.0) BS03 ZN 3.1.4.39 GO:0001953 ... Q64610 27075612
    91024 5dlv:B (2.0) BS04 CA 3.1.4.39 GO:0001953 ... Q64610 27075612
    91025 5dlw:A (1.8) BS03 ZN 3.1.4.39 GO:0001953 ... Q64610 27075612
    91026 5dlw:A (1.8) BS04 ZN 3.1.4.39 GO:0001953 ... Q64610 27075612
    91027 5dlw:A (1.8) BS05 CA 3.1.4.39 GO:0001953 ... Q64610 27075612
    91028 5dmm:A (1.779) BS01 ZN 2.1.1.10 GO:0003824 ... Q47690 26564203
    91029 5dmm:A (1.779) BS02 ZN 2.1.1.10 GO:0003824 ... Q47690 26564203
    91030 5dmy:A (1.95) BS01 MG 3.2.1.23 GO:0004553 ... D4QAP3 N/A
    91031 5dmy:A (1.95) BS02 MG 3.2.1.23 GO:0004553 ... D4QAP3 N/A
    91032 5dmy:B (1.95) BS01 MG 3.2.1.23 GO:0004553 ... D4QAP3 N/A
    91033 5dmy:B (1.95) BS02 MG 3.2.1.23 GO:0004553 ... D4QAP3 N/A
    91034 5dmy:C (1.95) BS01 MG 3.2.1.23 GO:0004553 ... D4QAP3 N/A
    91035 5dmz:A (2.4) BS02 MG 2.7.11.1 GO:0004672 ... O43683 26658523
    91036 5dmz:B (2.4) BS02 MG 2.7.11.1 GO:0004672 ... O43683 26658523
    91037 5dn3:A (2.05) BS01 MG 2.7.11.1 GO:0000212 ... O14965 27339427
    91038 5dn6:D (3.98) BS02 MG 7.1.2.2 GO:0005524 ... A1B8P0 26460036
    91039 5dn6:F (3.98) BS02 MG 7.1.2.2 GO:0005524 ... A1B8P0 26460036
    91040 5dnl:A (1.53) BS01 MN 4.2.1.19 GO:0000105 ... P58880 27717128
    91041 5dnl:B (1.53) BS01 MN 4.2.1.19 GO:0000105 ... P58880 27717128
    91042 5dnl:C (1.53) BS02 MN 4.2.1.19 GO:0000105 ... P58880 27717128
    91043 5dnr:A (1.95) BS01 MG 2.7.11.1 GO:0000212 ... O14965 27339427
    91044 5dnr:A (1.95) BS03 MG 2.7.11.1 GO:0000212 ... O14965 27339427
    91045 5dnx:A (1.8) BS01 MN 4.2.1.19 GO:0000105 ... P58880 27717128
    91046 5dnx:B (1.8) BS02 MN 4.2.1.19 GO:0000105 ... P58880 27717128
    91047 5dnx:C (1.8) BS02 MN 4.2.1.19 GO:0000105 ... P58880 27717128
    91048 5dny:A (3.11) BS01 MG 3.1.-.- GO:0000403 ... Q58719 26717941
    91049 5dny:A (3.11) BS02 MG 3.1.-.- GO:0000403 ... Q58719 26717941
    91050 5dny:C (3.11) BS01 MG 3.1.-.- GO:0000403 ... Q58719 26717941
    91051 5dny:C (3.11) BS02 MG 3.1.-.- GO:0000403 ... Q58719 26717941
    91052 5do4:H (1.859) BS03 CA 3.4.21.5 GO:0004252 ... P00734 27566147
    91053 5do9:A (2.6) BS03 MG ? GO:0001664 ... P21279 26755720
    91054 5do9:C (2.6) BS03 MG ? GO:0001664 ... P21279 26755720
    91055 5do9:E (2.6) BS03 MG ? GO:0001664 ... P21279 26755720
    91056 5dob:A (2.47) BS01 ZN ? GO:0046765 ... P16794 26511021
    91057 5dob:A (2.47) BS02 CA ? GO:0046765 ... P16794 26511021
    91058 5doc:A (1.94) BS01 ZN ? GO:0046765 ... P16794 26511021
    91059 5doc:B (1.94) BS01 ZN ? GO:0046765 ... P16794 26511021
    91060 5doe:B (3.0) BS01 ZN ? GO:0046765 ... P16794 26511021
    91061 5dog:A (1.7) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 28001003
    91062 5doh:A (1.05) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 28001003
    91063 5doh:B (1.05) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 28001003
    91064 5dok:A (2.3) BS01 MG ? N/A Q6JXI5 26551074
    91065 5dok:B (2.3) BS01 MG ? N/A Q6JXI5 26551074
    91066 5doo:A (3.133) BS01 CA ? GO:0046872 ... Q68XQ5 27474738
    91067 5dor:B (2.5) BS01 ZN 2.7.7.-
    3.1.-.-    		 GO:0003677 ... P36932 26453836
    91068 5dos:A (2.98) BS01 MG 2.7.11.1 GO:0004672 ... O14965 27339427
    91069 5dou:A (2.6) BS01 MG 6.3.4.16 GO:0000050 ... P31327 26592762
    91070 5dou:A (2.6) BS02 MG 6.3.4.16 GO:0000050 ... P31327 26592762
    91071 5dou:A (2.6) BS07 MG 6.3.4.16 GO:0000050 ... P31327 26592762
    91072 5dou:B (2.6) BS01 MG 6.3.4.16 GO:0000050 ... P31327 26592762
    91073 5dou:B (2.6) BS02 MG 6.3.4.16 GO:0000050 ... P31327 26592762
    91074 5dou:B (2.6) BS07 MG 6.3.4.16 GO:0000050 ... P31327 26592762
    91075 5dou:C (2.6) BS01 MG 6.3.4.16 GO:0000050 ... P31327 26592762
    91076 5dou:C (2.6) BS02 MG 6.3.4.16 GO:0000050 ... P31327 26592762
    91077 5dou:C (2.6) BS07 MG 6.3.4.16 GO:0000050 ... P31327 26592762
    91078 5dou:D (2.6) BS01 MG 6.3.4.16 GO:0000050 ... P31327 26592762
    91079 5dou:D (2.6) BS02 MG 6.3.4.16 GO:0000050 ... P31327 26592762
    91080 5dow:A (1.7) BS02 CA ? GO:0000086 ... P0DP23 28045382
    91081 5dow:A (1.7) BS03 CA ? GO:0000086 ... P0DP23 28045382
    91082 5dow:A (1.7) BS04 CA ? GO:0000086 ... P0DP23 28045382
    91083 5dow:A (1.7) BS05 CA ? GO:0000086 ... P0DP23 28045382
    91084 5dow:C (1.7) BS02 CA ? GO:0000086 ... P0DP23 28045382
    91085 5dow:C (1.7) BS03 CA ? GO:0000086 ... P0DP23 28045382
    91086 5dow:C (1.7) BS04 CA ? GO:0000086 ... P0DP23 28045382
    91087 5dow:C (1.7) BS05 CA ? GO:0000086 ... P0DP23 28045382
    91088 5dow:E (1.7) BS02 CA ? GO:0000086 ... P0DP23 28045382
    91089 5dow:E (1.7) BS03 CA ? GO:0000086 ... P0DP23 28045382
    91090 5dow:E (1.7) BS04 CA ? GO:0000086 ... P0DP23 28045382
    91091 5dow:E (1.7) BS05 CA ? GO:0000086 ... P0DP23 28045382
    91092 5dow:G (1.7) BS02 CA ? GO:0000086 ... P0DP23 28045382
    91093 5dow:G (1.7) BS03 CA ? GO:0000086 ... P0DP23 28045382
    91094 5dow:G (1.7) BS04 CA ? GO:0000086 ... P0DP23 28045382
    91095 5dow:G (1.7) BS05 CA ? GO:0000086 ... P0DP23 28045382
    91096 5dox:10 (3.1) BS03 MG ? GO:0003735 ... P60493 26028538
    91097 5dox:13 (3.1) BS03 MG ? GO:0003735 ... Q5SHQ6 26028538
    91098 5dox:14 (3.1) BS02 ZN ? GO:0003735 ... Q5SJE1 26028538
    91099 5dox:15 (3.1) BS02 MG ? GO:0003735 ... P80339 26028538
    91100 5dox:15 (3.1) BS03 ZN ? GO:0003735 ... P80339 26028538
    91101 5dox:16 (3.1) BS02 ZN ? GO:0000049 ... P35871 26028538
    91102 5dox:18 (3.1) BS02 MG ? GO:0003735 ... Q5SKU1 26028538
    91103 5dox:19 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 26028538
    91104 5dox:1D (3.1) BS02 MG ? GO:0002181 ... P60405 26028538
    91105 5dox:1D (3.1) BS03 MG ? GO:0002181 ... P60405 26028538
    91106 5dox:1D (3.1) BS04 MG ? GO:0002181 ... P60405 26028538
    91107 5dox:1E (3.1) BS02 MG ? GO:0003735 ... Q5SHN8 26028538
    91108 5dox:1F (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 26028538
    91109 5dox:1F (3.1) BS03 MG ? GO:0003735 ... Q5SHN9 26028538
    91110 5dox:1F (3.1) BS04 MG ? GO:0003735 ... Q5SHN9 26028538
    91111 5dox:1G (3.1) BS03 MG ? GO:0000049 ... Q5SHQ0 26028538
    91112 5dox:1Q (3.1) BS03 MG ? GO:0000049 ... P60489 26028538
    91113 5dox:1Q (3.1) BS04 MG ? GO:0000049 ... P60489 26028538
    91114 5dox:1R (3.1) BS02 MG ? GO:0003735 ... Q9Z9H5 26028538
    91115 5dox:1U (3.1) BS02 MG ? GO:0000027 ... P60491 26028538
    91116 5dox:1U (3.1) BS03 MG ? GO:0000027 ... P60491 26028538
    91117 5dox:1Y (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 26028538
    91118 5dox:1b (3.1) BS02 MG ? GO:0003735 ... P80371 26028538
    91119 5dox:1g (3.1) BS02 MG ? GO:0000028 ... P17291 26028538
    91120 5dox:1l (3.1) BS02 MG ? GO:0000049 ... Q5SHN3 26028538
    91121 5dox:1n (3.1) BS02 ZN N/A GO:0003735 ... N/A 26028538
    91122 5dox:1r (3.1) BS02 MG ? GO:0003735 ... Q5SLQ0 26028538
    91123 5dox:24 (3.1) BS02 ZN ? GO:0003735 ... Q5SJE1 26028538
    91124 5dox:25 (3.1) BS02 ZN ? GO:0003735 ... P80339 26028538
    91125 5dox:26 (3.1) BS02 ZN ? GO:0000049 ... P35871 26028538
    91126 5dox:29 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 26028538
    91127 5dox:2D (3.1) BS02 MG ? GO:0002181 ... P60405 26028538
    91128 5dox:2D (3.1) BS03 MG ? GO:0002181 ... P60405 26028538
    91129 5dox:2F (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 26028538
    91130 5dox:2Q (3.1) BS02 MG ? GO:0000049 ... P60489 26028538
    91131 5dox:2Y (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 26028538
    91132 5dox:2k (3.1) BS02 MG ? GO:0003735 ... P80376 26028538
    91133 5dox:2n (3.1) BS02 ZN N/A GO:0003735 ... N/A 26028538
    91134 5doy:10 (2.6) BS03 MG ? GO:0003735 ... P60493 26028538
    91135 5doy:10 (2.6) BS04 MG ? GO:0003735 ... P60493 26028538
    91136 5doy:10 (2.6) BS05 MG ? GO:0003735 ... P60493 26028538
    91137 5doy:10 (2.6) BS06 MG ? GO:0003735 ... P60493 26028538
    91138 5doy:12 (2.6) BS02 MG ? GO:0003735 ... Q5SHP6 26028538
    91139 5doy:13 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 26028538
    91140 5doy:13 (2.6) BS04 MG ? GO:0003735 ... Q5SHQ6 26028538
    91141 5doy:14 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 26028538
    91142 5doy:15 (2.6) BS02 MG ? GO:0003735 ... P80339 26028538
    91143 5doy:15 (2.6) BS03 ZN ? GO:0003735 ... P80339 26028538
    91144 5doy:16 (2.6) BS02 MG ? GO:0000049 ... P35871 26028538
    91145 5doy:16 (2.6) BS03 ZN ? GO:0000049 ... P35871 26028538
    91146 5doy:17 (2.6) BS02 MG ? GO:0003735 ... P80340 26028538
    91147 5doy:17 (2.6) BS03 MG ? GO:0003735 ... P80340 26028538
    91148 5doy:17 (2.6) BS04 MG ? GO:0003735 ... P80340 26028538
    91149 5doy:17 (2.6) BS05 MG ? GO:0003735 ... P80340 26028538
    91150 5doy:18 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 26028538
    91151 5doy:18 (2.6) BS03 MG ? GO:0003735 ... Q5SKU1 26028538
    91152 5doy:18 (2.6) BS04 MG ? GO:0003735 ... Q5SKU1 26028538
    91153 5doy:19 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 26028538
    91154 5doy:1D (2.6) BS03 MG ? GO:0002181 ... P60405 26028538
    91155 5doy:1D (2.6) BS04 MG ? GO:0002181 ... P60405 26028538
    91156 5doy:1D (2.6) BS05 MG ? GO:0002181 ... P60405 26028538
    91157 5doy:1D (2.6) BS06 MG ? GO:0002181 ... P60405 26028538
    91158 5doy:1D (2.6) BS07 MG ? GO:0002181 ... P60405 26028538
    91159 5doy:1D (2.6) BS08 MG ? GO:0002181 ... P60405 26028538
    91160 5doy:1E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 26028538
    91161 5doy:1E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 26028538
    91162 5doy:1E (2.6) BS04 MG ? GO:0003735 ... Q5SHN8 26028538
    91163 5doy:1F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 26028538
    91164 5doy:1F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 26028538
    91165 5doy:1F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 26028538
    91166 5doy:1F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 26028538
    91167 5doy:1F (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 26028538
    91168 5doy:1F (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 26028538
    91169 5doy:1F (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 26028538
    91170 5doy:1F (2.6) BS09 MG ? GO:0003735 ... Q5SHN9 26028538
    91171 5doy:1G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 26028538
    91172 5doy:1G (2.6) BS05 MG ? GO:0000049 ... Q5SHQ0 26028538
    91173 5doy:1N (2.6) BS02 MG ? GO:0003729 ... P60488 26028538
    91174 5doy:1N (2.6) BS03 MG ? GO:0003729 ... P60488 26028538
    91175 5doy:1N (2.6) BS04 MG ? GO:0003729 ... P60488 26028538
    91176 5doy:1N (2.6) BS05 MG ? GO:0003729 ... P60488 26028538
    91177 5doy:1N (2.6) BS06 MG ? GO:0003729 ... P60488 26028538
    91178 5doy:1O (2.6) BS03 MG ? GO:0003735 ... Q5SHP8 26028538
    91179 5doy:1P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 26028538
    91180 5doy:1P (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 26028538
    91181 5doy:1P (2.6) BS04 MG ? GO:0003735 ... Q5SHQ7 26028538
    91182 5doy:1P (2.6) BS05 MG ? GO:0003735 ... Q5SHQ7 26028538
    91183 5doy:1P (2.6) BS06 MG ? GO:0003735 ... Q5SHQ7 26028538
    91184 5doy:1Q (2.6) BS04 MG ? GO:0000049 ... P60489 26028538
    91185 5doy:1Q (2.6) BS05 MG ? GO:0000049 ... P60489 26028538
    91186 5doy:1Q (2.6) BS06 MG ? GO:0000049 ... P60489 26028538
    91187 5doy:1Q (2.6) BS07 MG ? GO:0000049 ... P60489 26028538
    91188 5doy:1Q (2.6) BS08 MG ? GO:0000049 ... P60489 26028538
    91189 5doy:1R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 26028538
    91190 5doy:1R (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 26028538
    91191 5doy:1R (2.6) BS04 MG ? GO:0003735 ... Q9Z9H5 26028538
    91192 5doy:1S (2.6) BS03 MG ? GO:0003735 ... Q5SHQ4 26028538
    91193 5doy:1T (2.6) BS03 MG ? GO:0003735 ... P60490 26028538
    91194 5doy:1U (2.6) BS02 MG ? GO:0000027 ... P60491 26028538
    91195 5doy:1U (2.6) BS03 MG ? GO:0000027 ... P60491 26028538
    91196 5doy:1U (2.6) BS04 MG ? GO:0000027 ... P60491 26028538
    91197 5doy:1U (2.6) BS05 MG ? GO:0000027 ... P60491 26028538
    91198 5doy:1U (2.6) BS06 MG ? GO:0000027 ... P60491 26028538
    91199 5doy:1U (2.6) BS07 MG ? GO:0000027 ... P60491 26028538
    91200 5doy:1U (2.6) BS08 MG ? GO:0000027 ... P60491 26028538
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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