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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    90801 5dfe:YD (3.09998) BS05 MG ? GO:0002181 ... P60405 27681416
    90802 5dfe:YD (3.09998) BS06 MG ? GO:0002181 ... P60405 27681416
    90803 5dfe:YD (3.09998) BS07 MG ? GO:0002181 ... P60405 27681416
    90804 5dfe:YD (3.09998) BS08 MG ? GO:0002181 ... P60405 27681416
    90805 5dfe:YD (3.09998) BS09 MG ? GO:0002181 ... P60405 27681416
    90806 5dfe:YD (3.09998) BS10 MG ? GO:0002181 ... P60405 27681416
    90807 5dfe:YE (3.09998) BS02 MG ? GO:0003735 ... Q5SHN8 27681416
    90808 5dfe:YE (3.09998) BS03 MG ? GO:0003735 ... Q5SHN8 27681416
    90809 5dfe:YF (3.09998) BS02 MG ? GO:0003735 ... Q5SHN9 27681416
    90810 5dfe:YF (3.09998) BS03 MG ? GO:0003735 ... Q5SHN9 27681416
    90811 5dfe:YF (3.09998) BS04 MG ? GO:0003735 ... Q5SHN9 27681416
    90812 5dfe:YG (3.09998) BS04 MG ? GO:0000049 ... Q5SHQ0 27681416
    90813 5dfe:YG (3.09998) BS05 MG ? GO:0000049 ... Q5SHQ0 27681416
    90814 5dfe:YQ (3.09998) BS03 MG ? GO:0000049 ... P60489 27681416
    90815 5dfe:YQ (3.09998) BS04 MG ? GO:0000049 ... P60489 27681416
    90816 5dfe:YR (3.09998) BS02 MG ? GO:0003735 ... Q9Z9H5 27681416
    90817 5dfe:YV (3.09998) BS02 MG ? GO:0003723 ... P60492 27681416
    90818 5dfe:YV (3.09998) BS03 MG ? GO:0003723 ... P60492 27681416
    90819 5dfe:YW (3.09998) BS02 MG ? GO:0003735 ... Q5SHP3 27681416
    90820 5dfe:YW (3.09998) BS03 MG ? GO:0003735 ... Q5SHP3 27681416
    90821 5dfe:YY (3.09998) BS02 ZN ? GO:0003723 ... Q5SHP9 27681416
    90822 5dg0:A (1.8) BS03 MN 3.1.11.2
    3.1.21.-    		 GO:0003677 ... P27695 26458045
    90823 5dg0:A (1.8) BS04 MN 3.1.11.2
    3.1.21.-    		 GO:0003677 ... P27695 26458045
    90824 5dg7:A (2.26) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    90825 5dg7:A (2.26) BS05 CA 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    90826 5dg8:A (2.12) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    90827 5dg8:A (2.12) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    90828 5dg9:A (2.15) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    90829 5dg9:A (2.15) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    90830 5dga:A (2.3) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    90831 5dga:A (2.3) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    90832 5dgb:A (1.79) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    90833 5dgb:A (1.79) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    90834 5dgc:A (1.94) BS02 MN ? GO:0000155 ... P0AE68 26569142
    90835 5dgc:B (1.94) BS01 MN ? GO:0000155 ... P0AE68 26569142
    90836 5dgd:A (1.13) BS01 MG 4.1.1.7 GO:0000287 ... P20906 N/A
    90837 5dgd:A (1.13) BS02 MG 4.1.1.7 GO:0000287 ... P20906 N/A
    90838 5dgd:A (1.13) BS03 MG 4.1.1.7 GO:0000287 ... P20906 N/A
    90839 5dgd:A (1.13) BS04 CA 4.1.1.7 GO:0000287 ... P20906 N/A
    90840 5dge:C8 (3.45) BS02 MG ? GO:0000054 ... P0CX55 N/A
    90841 5dge:D6 (3.45) BS02 ZN ? GO:0003735 ... P39939 N/A
    90842 5dge:D9 (3.45) BS02 ZN ? GO:0002181 ... P41057 N/A
    90843 5dge:E1 (3.45) BS02 ZN ? GO:0003735 ... P05759 N/A
    90844 5dge:L2 (3.45) BS03 MG ? GO:0002181 ... P0CX45 N/A
    90845 5dge:M0 (3.45) BS03 MG ? GO:0000027 ... P41805 N/A
    90846 5dge:M6 (3.45) BS02 MG ? GO:0000470 ... P26784 N/A
    90847 5dge:M7 (3.45) BS03 MG ? GO:0000448 ... P05740 N/A
    90848 5dge:N8 (3.45) BS02 MG ? GO:0002181 ... P02406 N/A
    90849 5dge:N8 (3.45) BS03 MG ? GO:0002181 ... P02406 N/A
    90850 5dge:O4 (3.45) BS02 MG ? GO:0002181 ... P87262 N/A
    90851 5dge:O7 (3.45) BS05 MG ? GO:0000448 ... P49166 N/A
    90852 5dge:O7 (3.45) BS06 ZN ? GO:0000448 ... P49166 N/A
    90853 5dge:Q0 (3.45) BS02 ZN ? GO:0003735 ... P0CH08 N/A
    90854 5dge:Q2 (3.45) BS02 ZN ? GO:0002181 ... P0CX27 N/A
    90855 5dge:Q3 (3.45) BS02 ZN ? GO:0002181 ... P0CX25 N/A
    90856 5dge:SM (3.45) BS03 MG ? GO:0000723 ... P39015 N/A
    90857 5dge:c8 (3.45) BS02 MG ? GO:0000054 ... P0CX55 N/A
    90858 5dge:c9 (3.45) BS02 MG ? GO:0000028 ... P07280 N/A
    90859 5dge:d6 (3.45) BS02 ZN ? GO:0003735 ... P39939 N/A
    90860 5dge:d6 (3.45) BS03 MG ? GO:0003735 ... P39939 N/A
    90861 5dge:d9 (3.45) BS02 ZN ? GO:0002181 ... P41057 N/A
    90862 5dge:l3 (3.45) BS02 MG ? GO:0000027 ... P14126 N/A
    90863 5dge:l3 (3.45) BS03 MG ? GO:0000027 ... P14126 N/A
    90864 5dge:m5 (3.45) BS04 MG ? GO:0002181 ... P05748 N/A
    90865 5dge:m6 (3.45) BS02 MG ? GO:0000470 ... P26784 N/A
    90866 5dge:o2 (3.45) BS02 MG ? GO:0002181 ... P38061 N/A
    90867 5dge:o4 (3.45) BS02 MG ? GO:0002181 ... P87262 N/A
    90868 5dge:o7 (3.45) BS03 ZN ? GO:0000448 ... P49166 N/A
    90869 5dge:q0 (3.45) BS02 ZN ? GO:0003735 ... P0CH08 N/A
    90870 5dge:q2 (3.45) BS02 MG ? GO:0002181 ... P0CX27 N/A
    90871 5dge:q2 (3.45) BS03 ZN ? GO:0002181 ... P0CX27 N/A
    90872 5dge:q3 (3.45) BS03 ZN ? GO:0002181 ... P0CX25 N/A
    90873 5dge:s5 (3.45) BS02 MG ? GO:0000028 ... P26783 N/A
    90874 5dgf:D6 (3.3) BS02 ZN ? GO:0003735 ... P39939 N/A
    90875 5dgf:D9 (3.3) BS02 ZN ? GO:0002181 ... P41057 N/A
    90876 5dgf:E1 (3.3) BS02 ZN ? GO:0003735 ... P05759 N/A
    90877 5dgf:O7 (3.3) BS03 ZN ? GO:0000448 ... P49166 N/A
    90878 5dgf:Q0 (3.3) BS02 ZN ? GO:0003735 ... P0CH08 N/A
    90879 5dgf:Q2 (3.3) BS02 ZN ? GO:0002181 ... P0CX27 N/A
    90880 5dgf:Q3 (3.3) BS02 ZN ? GO:0002181 ... P0CX25 N/A
    90881 5dgf:d6 (3.3) BS02 ZN ? GO:0003735 ... P39939 N/A
    90882 5dgf:d9 (3.3) BS02 ZN ? GO:0002181 ... P41057 N/A
    90883 5dgf:o7 (3.3) BS03 ZN ? GO:0000448 ... P49166 N/A
    90884 5dgf:q0 (3.3) BS02 ZN ? GO:0003735 ... P0CH08 N/A
    90885 5dgf:q2 (3.3) BS02 ZN ? GO:0002181 ... P0CX27 N/A
    90886 5dgf:q3 (3.3) BS03 ZN ? GO:0002181 ... P0CX25 N/A
    90887 5dgh:A (2.1) BS03 MG 2.7.4.24 GO:0000829 ... O43314 27460418
    90888 5dgh:A (2.1) BS04 MG 2.7.4.24 GO:0000829 ... O43314 27460418
    90889 5dgh:A (2.1) BS05 MG 2.7.4.24 GO:0000829 ... O43314 27460418
    90890 5dgi:A (1.85) BS03 MG 2.7.4.24 GO:0000829 ... O43314 27460418
    90891 5dgi:A (1.85) BS04 MG 2.7.4.24 GO:0000829 ... O43314 27460418
    90892 5dgi:A (1.85) BS05 MG 2.7.4.24 GO:0000829 ... O43314 27460418
    90893 5dgt:A (1.081) BS01 MG 4.1.1.7 GO:0000287 ... P20906 N/A
    90894 5dgt:A (1.081) BS02 CA 4.1.1.7 GO:0000287 ... P20906 N/A
    90895 5dgv:D6 (3.1) BS02 ZN ? GO:0003735 ... P39939 N/A
    90896 5dgv:D9 (3.1) BS02 ZN ? GO:0002181 ... P41057 N/A
    90897 5dgv:E1 (3.1) BS02 ZN ? GO:0003735 ... P05759 N/A
    90898 5dgv:O7 (3.1) BS03 ZN ? GO:0000448 ... P49166 N/A
    90899 5dgv:Q0 (3.1) BS02 ZN ? GO:0003735 ... P0CH08 N/A
    90900 5dgv:Q2 (3.1) BS02 ZN ? GO:0002181 ... P0CX27 N/A
    90901 5dgv:Q3 (3.1) BS02 ZN ? GO:0002181 ... P0CX25 N/A
    90902 5dgv:d6 (3.1) BS02 ZN ? GO:0003735 ... P39939 N/A
    90903 5dgv:d9 (3.1) BS02 ZN ? GO:0002181 ... P41057 N/A
    90904 5dgv:o7 (3.1) BS03 ZN ? GO:0000448 ... P49166 N/A
    90905 5dgv:q0 (3.1) BS02 ZN ? GO:0003735 ... P0CH08 N/A
    90906 5dgv:q2 (3.1) BS02 ZN ? GO:0002181 ... P0CX27 N/A
    90907 5dgv:q3 (3.1) BS03 ZN ? GO:0002181 ... P0CX25 N/A
    90908 5dh4:A (2.2) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 26602277
    90909 5dh4:B (2.2) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 26602277
    90910 5dh5:A (2.0) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 26602277
    90911 5dh5:B (2.0) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 26602277
    90912 5dh9:A (2.55) BS02 MG 3.6.5.- GO:0000054 ... P62826 26349033
    90913 5dha:A (2.95) BS02 MG 3.6.5.- GO:0000054 ... P62826 26349033
    90914 5dhf:A (2.285) BS02 MG 3.6.5.- GO:0000054 ... P62826 26349033
    90915 5dhf:C (2.285) BS02 ZN ? GO:0000055 ... P30822 26349033
    90916 5dhi:A (2.25) BS01 MG 4.2.3.61 GO:0000287 ... Q40577 26378620
    90917 5dhi:A (2.25) BS02 MG 4.2.3.61 GO:0000287 ... Q40577 26378620
    90918 5dhk:A (2.43) BS01 MG 4.2.3.61 GO:0000287 ... Q40577 26378620
    90919 5dhk:A (2.43) BS02 MG 4.2.3.61 GO:0000287 ... Q40577 26378620
    90920 5di3:A (2.5) BS02 MG ? GO:0000139 ... A8ISN6 26551564
    90921 5di3:B (2.5) BS02 MG ? GO:0003924 ... A8INQ0 26551564
    90922 5di9:A (2.28) BS02 MG 3.6.5.- GO:0000054 ... P62826 26349033
    90923 5di9:C (2.28) BS02 ZN ? GO:0000055 ... P30822 26349033
    90924 5dif:A (2.092) BS02 MG 3.6.5.- GO:0000054 ... P62826 26349033
    90925 5din:A (1.864) BS01 ZN 6.3.2.19 N/A Q8N448 26451611
    90926 5din:A (1.864) BS02 ZN 6.3.2.19 N/A Q8N448 26451611
    90927 5din:A (1.864) BS03 ZN 6.3.2.19 N/A Q8N448 26451611
    90928 5din:A (1.864) BS04 ZN 6.3.2.19 N/A Q8N448 26451611
    90929 5din:B (1.864) BS01 ZN 6.3.2.19 N/A Q8N448 26451611
    90930 5din:B (1.864) BS02 ZN 6.3.2.19 N/A Q8N448 26451611
    90931 5din:B (1.864) BS03 ZN 6.3.2.19 N/A Q8N448 26451611
    90932 5din:B (1.864) BS04 ZN 6.3.2.19 N/A Q8N448 26451611
    90933 5dis:B (2.85) BS02 MG 3.6.5.- GO:0003924 ... P62826 26489467
    90934 5diz:A (3.2) BS01 ZN 3.1.26.5 GO:0001682 ... Q680B9 26655022
    90935 5diz:B (3.2) BS01 ZN 3.1.26.5 GO:0001682 ... Q680B9 26655022
    90936 5dj3:B (2.227) BS02 MG ? GO:0006520 ... A0A0X1KHF5 26551990
    90937 5djg:A (1.951) BS01 MG 3.1.3.11
    3.1.3.25
    3.1.3.7    		 GO:0000103 ... P9WKJ1 26512869
    90938 5djg:A (1.951) BS02 LI 3.1.3.11
    3.1.3.25
    3.1.3.7    		 GO:0000103 ... P9WKJ1 26512869
    90939 5djh:A (1.451) BS01 MG 3.1.3.11
    3.1.3.25
    3.1.3.7    		 GO:0000103 ... P9WKJ1 26512869
    90940 5djh:A (1.451) BS02 MG 3.1.3.11
    3.1.3.25
    3.1.3.7    		 GO:0000103 ... P9WKJ1 26512869
    90941 5dji:A (1.659) BS01 MG 3.1.3.11
    3.1.3.25
    3.1.3.7    		 GO:0000103 ... P9WKJ1 26512869
    90942 5dji:A (1.659) BS02 MG 3.1.3.11
    3.1.3.25
    3.1.3.7    		 GO:0000103 ... P9WKJ1 26512869
    90943 5djj:A (1.501) BS01 MG 3.1.3.11
    3.1.3.25
    3.1.3.7    		 GO:0000103 ... P9WKJ1 26512869
    90944 5djj:A (1.501) BS02 MG 3.1.3.11
    3.1.3.25
    3.1.3.7    		 GO:0000103 ... P9WKJ1 26512869
    90945 5djk:A (1.799) BS01 CA 3.1.3.11
    3.1.3.25
    3.1.3.7    		 GO:0000103 ... P9WKJ1 26512869
    90946 5djk:A (1.799) BS02 CA 3.1.3.11
    3.1.3.25
    3.1.3.7    		 GO:0000103 ... P9WKJ1 26512869
    90947 5djl:B (1.8) BS01 CA 2.5.1.18 GO:0000302 ... P09211 N/A
    90948 5djl:B (1.8) BS02 CA 2.5.1.18 GO:0000302 ... P09211 N/A
    90949 5djq:A (3.2) BS04 CU 7.1.1.9 GO:0004129 ... D9IA43 20576851
    90950 5djq:A (3.2) BS05 CA 7.1.1.9 GO:0004129 ... D9IA43 20576851
    90951 5djq:D (3.2) BS04 CU 7.1.1.9 GO:0004129 ... D9IA43 20576851
    90952 5djq:D (3.2) BS05 CA 7.1.1.9 GO:0004129 ... D9IA43 20576851
    90953 5djq:G (3.2) BS04 CU 7.1.1.9 GO:0004129 ... D9IA43 20576851
    90954 5djq:G (3.2) BS05 CA 7.1.1.9 GO:0004129 ... D9IA43 20576851
    90955 5djq:K (3.2) BS04 CU 7.1.1.9 GO:0004129 ... D9IA43 20576851
    90956 5djq:K (3.2) BS05 CA 7.1.1.9 GO:0004129 ... D9IA43 20576851
    90957 5dk5:A (2.1) BS01 ZN 3.1.-.- GO:0000175 ... Q10905 27529560
    90958 5dk5:A (2.1) BS02 MG 3.1.-.- GO:0000175 ... Q10905 27529560
    90959 5dk5:B (2.1) BS01 ZN 3.1.-.- GO:0000175 ... Q10905 27529560
    90960 5dka:A (1.55) BS01 ZN 2.3.2.27 GO:0000139 ... Q96EQ8 27411375
    90961 5dka:A (1.55) BS02 ZN 2.3.2.27 GO:0000139 ... Q96EQ8 27411375
    90962 5dka:A (1.55) BS03 ZN 2.3.2.27 GO:0000139 ... Q96EQ8 27411375
    90963 5dka:B (1.55) BS01 ZN 2.3.2.27 GO:0000139 ... Q96EQ8 27411375
    90964 5dka:B (1.55) BS02 ZN 2.3.2.27 GO:0000139 ... Q96EQ8 27411375
    90965 5dka:B (1.55) BS03 ZN 2.3.2.27 GO:0000139 ... Q96EQ8 27411375
    90966 5dka:B (1.55) BS04 MG 2.3.2.27 GO:0000139 ... Q96EQ8 27411375
    90967 5dkf:A (1.94) BS01 MN ? GO:0000155 ... P0AE68 26569142
    90968 5dkf:B (1.94) BS01 MN ? GO:0000155 ... P0AE68 26569142
    90969 5dki:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26471124
    90970 5dki:I (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26471124
    90971 5dki:K (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 26471124
    90972 5dki:N (2.8) BS02 MG 3.4.25.1 GO:0000502 ... P38624 26471124
    90973 5dki:V (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26471124
    90974 5dki:Y (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26471124
    90975 5dki:Z (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26471124
    90976 5dkj:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26471124
    90977 5dkj:I (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26471124
    90978 5dkj:K (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 26471124
    90979 5dkj:N (2.8) BS02 MG 3.4.25.1 GO:0000502 ... P38624 26471124
    90980 5dkj:V (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P25043 26471124
    90981 5dkj:Y (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 26471124
    90982 5dkj:Z (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26471124
    90983 5dkn:A (1.528) BS01 CA ? GO:0005509 ... P02638 26727270
    90984 5dkn:A (1.528) BS02 CA ? GO:0005509 ... P02638 26727270
    90985 5dkq:A (1.591) BS01 CA ? GO:0005509 ... P02638 26727270
    90986 5dkq:A (1.591) BS02 CA ? GO:0005509 ... P02638 26727270
    90987 5dkr:A (1.742) BS01 CA ? GO:0005509 ... P02638 26727270
    90988 5dkr:A (1.742) BS02 CA ? GO:0005509 ... P02638 26727270
    90989 5dkr:B (1.742) BS02 CA ? GO:0005509 ... P02638 26727270
    90990 5dkr:B (1.742) BS03 CA ? GO:0005509 ... P02638 26727270
    90991 5dkr:B (1.742) BS04 CA ? GO:0005509 ... P02638 26727270
    90992 5dkw:A (2.689) BS05 CA 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 26836966
    90993 5dkw:A (2.689) BS06 CA 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 26836966
    90994 5dkw:B (2.689) BS04 CA 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 26836966
    90995 5dkw:B (2.689) BS05 CA 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 26836966
    90996 5dkw:B (2.689) BS07 CA 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 26836966
    90997 5dl7:A (1.75) BS01 CA ? GO:0015288 ... A0A0D5YKR4 26805524
    90998 5dl7:A (1.75) BS02 CA ? GO:0015288 ... A0A0D5YKR4 26805524
    90999 5dl7:A (1.75) BS03 CA ? GO:0015288 ... A0A0D5YKR4 26805524
    91000 5dl7:A (1.75) BS04 CA ? GO:0015288 ... A0A0D5YKR4 26805524
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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