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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    90601 5dat:m0 (3.15) BS03 MG ? GO:0000027 ... P41805 N/A
    90602 5dat:m5 (3.15) BS04 MG ? GO:0002181 ... P05748 N/A
    90603 5dat:m6 (3.15) BS02 MG ? GO:0000470 ... P26784 N/A
    90604 5dat:m7 (3.15) BS03 MG ? GO:0000448 ... P05740 N/A
    90605 5dat:n1 (3.15) BS03 MG ? GO:0002181 ... Q02753 N/A
    90606 5dat:o2 (3.15) BS02 MG ? GO:0002181 ... P38061 N/A
    90607 5dat:o3 (3.15) BS02 MG ? GO:0000027 ... P05744 N/A
    90608 5dat:o7 (3.15) BS03 ZN ? GO:0000448 ... P49166 N/A
    90609 5dat:q0 (3.15) BS02 ZN ? GO:0003735 ... P0CH08 N/A
    90610 5dat:q2 (3.15) BS02 ZN ? GO:0002181 ... P0CX27 N/A
    90611 5dat:q3 (3.15) BS03 ZN ? GO:0002181 ... P0CX25 N/A
    90612 5dat:s4 (3.15) BS02 MG ? GO:0002181 ... P0CX35 N/A
    90613 5dat:s5 (3.15) BS02 MG ? GO:0000028 ... P26783 N/A
    90614 5dat:sM (3.15) BS03 MG ? GO:0000723 ... P39015 N/A
    90615 5dau:A (1.5) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    90616 5dbr:A (2.25) BS02 CA ? GO:0000086 ... P0DP23 N/A
    90617 5dbr:A (2.25) BS03 CA ? GO:0000086 ... P0DP23 N/A
    90618 5dbr:A (2.25) BS04 CA ? GO:0000086 ... P0DP23 N/A
    90619 5dbr:A (2.25) BS05 CA ? GO:0000086 ... P0DP23 N/A
    90620 5dbs:A (2.11) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    90621 5dc3:D6 (3.25) BS02 ZN ? GO:0003735 ... P39939 27196944
    90622 5dc3:D9 (3.25) BS02 ZN ? GO:0002181 ... P41057 27196944
    90623 5dc3:E1 (3.25) BS02 ZN ? GO:0003735 ... P05759 27196944
    90624 5dc3:O7 (3.25) BS03 ZN ? GO:0000448 ... P49166 27196944
    90625 5dc3:Q0 (3.25) BS02 ZN ? GO:0003735 ... P0CH08 27196944
    90626 5dc3:Q2 (3.25) BS02 ZN ? GO:0002181 ... P0CX27 27196944
    90627 5dc3:Q3 (3.25) BS02 ZN ? GO:0002181 ... P0CX25 27196944
    90628 5dc3:d6 (3.25) BS02 ZN ? GO:0003735 ... P39939 27196944
    90629 5dc3:d7 (3.25) BS02 ZN ? GO:0000028 ... P35997 27196944
    90630 5dc3:d9 (3.25) BS02 ZN ? GO:0002181 ... P41057 27196944
    90631 5dc3:o7 (3.25) BS03 ZN ? GO:0000448 ... P49166 27196944
    90632 5dc3:q0 (3.25) BS02 ZN ? GO:0003735 ... P0CH08 27196944
    90633 5dc3:q2 (3.25) BS02 ZN ? GO:0002181 ... P0CX27 27196944
    90634 5dc3:q3 (3.25) BS03 ZN ? GO:0002181 ... P0CX25 27196944
    90635 5dc5:A (1.94) BS02 ZN 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 26806311
    90636 5dc5:B (1.94) BS02 ZN 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 26806311
    90637 5dc6:A (1.553) BS03 ZN 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 26806311
    90638 5dc6:B (1.553) BS03 ZN 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 26806311
    90639 5dc7:A (2.3) BS03 ZN 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 26806311
    90640 5dc7:B (2.3) BS03 ZN 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 26806311
    90641 5dc8:A (1.3) BS03 ZN 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 26806311
    90642 5dc8:B (1.3) BS03 ZN 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 26806311
    90643 5dcb:A (2.05) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90644 5dcb:B (2.05) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90645 5dcb:C (2.05) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90646 5dcb:D (2.05) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90647 5dcd:A (2.31) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90648 5dcd:B (2.31) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90649 5dcd:C (2.31) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90650 5dcd:D (2.31) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90651 5dce:A (2.23) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 26828675
    90652 5dce:B (2.23) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 26828675
    90653 5dce:C (2.23) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 26828675
    90654 5dce:D (2.23) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 26828675
    90655 5dcg:B (2.01) BS01 CA 2.5.1.18 GO:0000302 ... P09211 N/A
    90656 5dco:A (2.326) BS01 FE 1.17.4.1 GO:0009263 ... Q5KW80 26324712
    90657 5dco:A (2.326) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 26324712
    90658 5dcr:A (2.108) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 26324712
    90659 5dcr:A (2.108) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 26324712
    90660 5dcs:A (2.006) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 26324712
    90661 5dcs:A (2.006) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 26324712
    90662 5dcx:A (2.6) BS01 MG 3.6.4.12 N/A P03132 26314310
    90663 5dcx:B (2.6) BS01 MG 3.6.4.12 N/A P03132 26314310
    90664 5dcx:C (2.6) BS01 MG 3.6.4.12 N/A P03132 26314310
    90665 5dcx:D (2.6) BS01 MG 3.6.4.12 N/A P03132 26314310
    90666 5dcx:E (2.6) BS01 MG 3.6.4.12 N/A P03132 26314310
    90667 5dcx:F (2.6) BS01 MG 3.6.4.12 N/A P03132 26314310
    90668 5dcx:G (2.6) BS01 MG 3.6.4.12 N/A P03132 26314310
    90669 5dcx:H (2.6) BS01 MG 3.6.4.12 N/A P03132 26314310
    90670 5dcx:I (2.6) BS01 MG 3.6.4.12 N/A P03132 26314310
    90671 5dcx:J (2.6) BS01 MG 3.6.4.12 N/A P03132 26314310
    90672 5dcx:K (2.6) BS01 MG 3.6.4.12 N/A P03132 26314310
    90673 5dcz:A (2.23) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 N/A
    90674 5dd7:A (1.7) BS03 MG 2.7.4.16 GO:0000287 ... A0A0D5YC82 30867460
    90675 5dd7:A (1.7) BS04 MG 2.7.4.16 GO:0000287 ... A0A0D5YC82 30867460
    90676 5dd7:B (1.7) BS03 MG 2.7.4.16 GO:0000287 ... A0A0D5YC82 30867460
    90677 5dd7:B (1.7) BS04 MG 2.7.4.16 GO:0000287 ... A0A0D5YC82 30867460
    90678 5ddl:B (1.98) BS04 CA 2.5.1.18 GO:0000302 ... P09211 N/A
    90679 5ddy:A (3.36) BS01 MG 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 26836966
    90680 5ddy:A (3.36) BS02 MN 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 26836966
    90681 5ddy:C (3.36) BS01 MG 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 26836966
    90682 5ddy:C (3.36) BS02 MN 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 26836966
    90683 5ddy:E (3.36) BS01 MG 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 26836966
    90684 5ddy:E (3.36) BS02 MN 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 26836966
    90685 5ddy:G (3.36) BS01 MG 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 26836966
    90686 5ddy:G (3.36) BS02 MN 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 26836966
    90687 5ddy:G (3.36) BS04 MN 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 26836966
    90688 5de3:A (1.417) BS02 MG ? GO:0000139 ... A8ISN6 N/A
    90689 5deb:A (2.14) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    90690 5deh:A (1.7) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    90691 5dei:A (1.3) BS03 MG 4.1.1.7 GO:0000287 ... P20906 N/A
    90692 5dei:A (1.3) BS04 CA 4.1.1.7 GO:0000287 ... P20906 N/A
    90693 5dei:A (1.3) BS05 CA 4.1.1.7 GO:0000287 ... P20906 N/A
    90694 5dei:B (1.3) BS03 MG 4.1.1.7 GO:0000287 ... P20906 N/A
    90695 5dei:B (1.3) BS04 CA 4.1.1.7 GO:0000287 ... P20906 N/A
    90696 5dei:B (1.3) BS05 CA 4.1.1.7 GO:0000287 ... P20906 N/A
    90697 5dei:C (1.3) BS02 MG 4.1.1.7 GO:0000287 ... P20906 N/A
    90698 5dei:C (1.3) BS03 MG 4.1.1.7 GO:0000287 ... P20906 N/A
    90699 5dei:C (1.3) BS06 CA 4.1.1.7 GO:0000287 ... P20906 N/A
    90700 5dei:D (1.3) BS01 MG 4.1.1.7 GO:0000287 ... P20906 N/A
    90701 5dei:D (1.3) BS03 MG 4.1.1.7 GO:0000287 ... P20906 N/A
    90702 5dei:D (1.3) BS06 CA 4.1.1.7 GO:0000287 ... P20906 N/A
    90703 5dej:A (1.37) BS01 CA ? GO:0005179 ... P02766 N/A
    90704 5den:A (2.9) BS01 FE 1.14.16.1 GO:0004497 ... P04176 26884182
    90705 5den:B (2.9) BS01 FE 1.14.16.1 GO:0004497 ... P04176 26884182
    90706 5den:C (2.9) BS01 FE 1.14.16.1 GO:0004497 ... P04176 26884182
    90707 5den:D (2.9) BS01 FE 1.14.16.1 GO:0004497 ... P04176 26884182
    90708 5des:A (2.05) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    90709 5des:A (2.05) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    90710 5deu:A (1.801) BS03 FE 1.14.11.80 GO:0006211 ... Q6N021 26524525
    90711 5deu:A (1.801) BS04 ZN 1.14.11.80 GO:0006211 ... Q6N021 26524525
    90712 5deu:A (1.801) BS05 ZN 1.14.11.80 GO:0006211 ... Q6N021 26524525
    90713 5deu:A (1.801) BS06 ZN 1.14.11.80 GO:0006211 ... Q6N021 26524525
    90714 5dfa:A (2.5) BS01 ZN 3.2.1.23 GO:0004565 ... F8TRX0 26627651
    90715 5dfa:B (2.5) BS01 ZN 3.2.1.23 GO:0004565 ... F8TRX0 26627651
    90716 5dfa:C (2.5) BS01 ZN 3.2.1.23 GO:0004565 ... F8TRX0 26627651
    90717 5dfe:QB (3.09998) BS02 MG ? GO:0003735 ... P80371 27681416
    90718 5dfe:QE (3.09998) BS02 MG ? GO:0003723 ... Q5SHQ5 27681416
    90719 5dfe:QK (3.09998) BS02 MG ? GO:0003735 ... P80376 27681416
    90720 5dfe:QL (3.09998) BS02 MG ? GO:0000049 ... Q5SHN3 27681416
    90721 5dfe:QN (3.09998) BS02 ZN N/A GO:0003735 ... N/A 27681416
    90722 5dfe:QT (3.09998) BS02 MG ? GO:0003723 ... P80380 27681416
    90723 5dfe:QY (3.09998) BS05 MG ? GO:0003747 ... P07012 27681416
    90724 5dfe:R0 (3.09998) BS03 MG ? GO:0003735 ... P60493 27681416
    90725 5dfe:R0 (3.09998) BS04 MG ? GO:0003735 ... P60493 27681416
    90726 5dfe:R0 (3.09998) BS05 MG ? GO:0003735 ... P60493 27681416
    90727 5dfe:R1 (3.09998) BS02 MG ? GO:0003735 ... P60494 27681416
    90728 5dfe:R3 (3.09998) BS03 MG ? GO:0003735 ... Q5SHQ6 27681416
    90729 5dfe:R3 (3.09998) BS04 MG ? GO:0003735 ... Q5SHQ6 27681416
    90730 5dfe:R4 (3.09998) BS02 ZN ? GO:0003735 ... Q5SJE1 27681416
    90731 5dfe:R5 (3.09998) BS02 MG ? GO:0003735 ... P80339 27681416
    90732 5dfe:R5 (3.09998) BS03 ZN ? GO:0003735 ... P80339 27681416
    90733 5dfe:R6 (3.09998) BS02 ZN ? GO:0000049 ... P35871 27681416
    90734 5dfe:R7 (3.09998) BS02 MG ? GO:0003735 ... P80340 27681416
    90735 5dfe:R8 (3.09998) BS02 MG ? GO:0003735 ... Q5SKU1 27681416
    90736 5dfe:R8 (3.09998) BS03 MG ? GO:0003735 ... Q5SKU1 27681416
    90737 5dfe:R9 (3.09998) BS02 ZN ? GO:0003735 ... Q5SHR2 27681416
    90738 5dfe:RD (3.09998) BS03 MG ? GO:0002181 ... P60405 27681416
    90739 5dfe:RD (3.09998) BS04 MG ? GO:0002181 ... P60405 27681416
    90740 5dfe:RD (3.09998) BS05 MG ? GO:0002181 ... P60405 27681416
    90741 5dfe:RD (3.09998) BS06 MG ? GO:0002181 ... P60405 27681416
    90742 5dfe:RD (3.09998) BS07 MG ? GO:0002181 ... P60405 27681416
    90743 5dfe:RD (3.09998) BS08 MG ? GO:0002181 ... P60405 27681416
    90744 5dfe:RD (3.09998) BS09 MG ? GO:0002181 ... P60405 27681416
    90745 5dfe:RD (3.09998) BS10 MG ? GO:0002181 ... P60405 27681416
    90746 5dfe:RD (3.09998) BS11 MG ? GO:0002181 ... P60405 27681416
    90747 5dfe:RE (3.09998) BS02 MG ? GO:0003735 ... Q5SHN8 27681416
    90748 5dfe:RE (3.09998) BS03 MG ? GO:0003735 ... Q5SHN8 27681416
    90749 5dfe:RE (3.09998) BS04 MG ? GO:0003735 ... Q5SHN8 27681416
    90750 5dfe:RF (3.09998) BS02 MG ? GO:0003735 ... Q5SHN9 27681416
    90751 5dfe:RF (3.09998) BS03 MG ? GO:0003735 ... Q5SHN9 27681416
    90752 5dfe:RF (3.09998) BS04 MG ? GO:0003735 ... Q5SHN9 27681416
    90753 5dfe:RF (3.09998) BS05 MG ? GO:0003735 ... Q5SHN9 27681416
    90754 5dfe:RF (3.09998) BS06 MG ? GO:0003735 ... Q5SHN9 27681416
    90755 5dfe:RF (3.09998) BS07 MG ? GO:0003735 ... Q5SHN9 27681416
    90756 5dfe:RF (3.09998) BS08 MG ? GO:0003735 ... Q5SHN9 27681416
    90757 5dfe:RF (3.09998) BS09 MG ? GO:0003735 ... Q5SHN9 27681416
    90758 5dfe:RF (3.09998) BS10 MG ? GO:0003735 ... Q5SHN9 27681416
    90759 5dfe:RF (3.09998) BS11 MG ? GO:0003735 ... Q5SHN9 27681416
    90760 5dfe:RF (3.09998) BS12 MG ? GO:0003735 ... Q5SHN9 27681416
    90761 5dfe:RG (3.09998) BS04 MG ? GO:0000049 ... Q5SHQ0 27681416
    90762 5dfe:RG (3.09998) BS05 MG ? GO:0000049 ... Q5SHQ0 27681416
    90763 5dfe:RG (3.09998) BS06 MG ? GO:0000049 ... Q5SHQ0 27681416
    90764 5dfe:RN (3.09998) BS02 MG ? GO:0003729 ... P60488 27681416
    90765 5dfe:RN (3.09998) BS03 MG ? GO:0003729 ... P60488 27681416
    90766 5dfe:RP (3.09998) BS02 MG ? GO:0003735 ... Q5SHQ7 27681416
    90767 5dfe:RP (3.09998) BS03 MG ? GO:0003735 ... Q5SHQ7 27681416
    90768 5dfe:RQ (3.09998) BS03 MG ? GO:0000049 ... P60489 27681416
    90769 5dfe:RQ (3.09998) BS04 MG ? GO:0000049 ... P60489 27681416
    90770 5dfe:RQ (3.09998) BS05 MG ? GO:0000049 ... P60489 27681416
    90771 5dfe:RQ (3.09998) BS06 MG ? GO:0000049 ... P60489 27681416
    90772 5dfe:RR (3.09998) BS02 MG ? GO:0003735 ... Q9Z9H5 27681416
    90773 5dfe:RR (3.09998) BS03 MG ? GO:0003735 ... Q9Z9H5 27681416
    90774 5dfe:RR (3.09998) BS04 MG ? GO:0003735 ... Q9Z9H5 27681416
    90775 5dfe:RU (3.09998) BS02 MG ? GO:0000027 ... P60491 27681416
    90776 5dfe:RU (3.09998) BS03 MG ? GO:0000027 ... P60491 27681416
    90777 5dfe:RU (3.09998) BS04 MG ? GO:0000027 ... P60491 27681416
    90778 5dfe:RU (3.09998) BS05 MG ? GO:0000027 ... P60491 27681416
    90779 5dfe:RU (3.09998) BS06 MG ? GO:0000027 ... P60491 27681416
    90780 5dfe:RV (3.09998) BS02 MG ? GO:0003723 ... P60492 27681416
    90781 5dfe:RV (3.09998) BS03 MG ? GO:0003723 ... P60492 27681416
    90782 5dfe:RV (3.09998) BS04 MG ? GO:0003723 ... P60492 27681416
    90783 5dfe:RW (3.09998) BS02 MG ? GO:0003735 ... Q5SHP3 27681416
    90784 5dfe:RY (3.09998) BS02 ZN ? GO:0003723 ... Q5SHP9 27681416
    90785 5dfe:XE (3.09998) BS02 MG ? GO:0003723 ... Q5SHQ5 27681416
    90786 5dfe:XF (3.09998) BS02 MG ? GO:0003735 ... Q5SLP8 27681416
    90787 5dfe:XJ (3.09998) BS02 MG ? GO:0000049 ... Q5SHN7 27681416
    90788 5dfe:XN (3.09998) BS02 ZN N/A GO:0003735 ... N/A 27681416
    90789 5dfe:XT (3.09998) BS02 MG ? GO:0003723 ... P80380 27681416
    90790 5dfe:XY (3.09998) BS05 MG ? GO:0003747 ... P07012 27681416
    90791 5dfe:Y0 (3.09998) BS04 MG ? GO:0003735 ... P60493 27681416
    90792 5dfe:Y4 (3.09998) BS02 ZN ? GO:0003735 ... Q5SJE1 27681416
    90793 5dfe:Y5 (3.09998) BS02 MG ? GO:0003735 ... P80339 27681416
    90794 5dfe:Y5 (3.09998) BS03 MG ? GO:0003735 ... P80339 27681416
    90795 5dfe:Y5 (3.09998) BS04 ZN ? GO:0003735 ... P80339 27681416
    90796 5dfe:Y6 (3.09998) BS02 ZN ? GO:0000049 ... P35871 27681416
    90797 5dfe:Y7 (3.09998) BS02 MG ? GO:0003735 ... P80340 27681416
    90798 5dfe:Y9 (3.09998) BS02 ZN ? GO:0003735 ... Q5SHR2 27681416
    90799 5dfe:YD (3.09998) BS03 MG ? GO:0002181 ... P60405 27681416
    90800 5dfe:YD (3.09998) BS04 MG ? GO:0002181 ... P60405 27681416
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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