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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    90401 5d8y:L (2.05) BS05 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90402 5d8y:M (2.05) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90403 5d8y:M (2.05) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90404 5d8y:M (2.05) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90405 5d8y:M (2.05) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90406 5d8y:N (2.05) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90407 5d8y:N (2.05) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90408 5d8y:N (2.05) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90409 5d8y:N (2.05) BS05 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90410 5d8y:O (2.05) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90411 5d8y:O (2.05) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90412 5d8y:O (2.05) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90413 5d8y:O (2.05) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90414 5d8y:P (2.05) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90415 5d8y:P (2.05) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90416 5d8y:P (2.05) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90417 5d8y:P (2.05) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90418 5d8y:Q (2.05) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90419 5d8y:Q (2.05) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90420 5d8y:Q (2.05) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90421 5d8y:Q (2.05) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90422 5d8y:R (2.05) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90423 5d8y:R (2.05) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90424 5d8y:R (2.05) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90425 5d8y:R (2.05) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90426 5d8y:S (2.05) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90427 5d8y:S (2.05) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90428 5d8y:S (2.05) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90429 5d8y:S (2.05) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90430 5d8y:T (2.05) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90431 5d8y:T (2.05) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90432 5d8y:T (2.05) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90433 5d8y:T (2.05) BS05 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90434 5d8y:U (2.05) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90435 5d8y:U (2.05) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90436 5d8y:U (2.05) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90437 5d8y:U (2.05) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90438 5d8y:V (2.05) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90439 5d8y:V (2.05) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90440 5d8y:V (2.05) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90441 5d8y:V (2.05) BS05 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90442 5d8y:W (2.05) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90443 5d8y:W (2.05) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90444 5d8y:W (2.05) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90445 5d8y:W (2.05) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90446 5d8y:X (2.05) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90447 5d8y:X (2.05) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90448 5d8y:X (2.05) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90449 5d8y:X (2.05) BS05 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90450 5d91:A (2.501) BS03 MG ?
    2.7.8.-
    GO:0008654 ... A9WSF5
    O27985
    26510127
    90451 5d92:A (3.62) BS01 MG ?
    2.7.8.-
    GO:0008654 ... A9WSF5
    O27985
    26510127
    90452 5d92:A (3.62) BS02 MG ?
    2.7.8.-
    GO:0008654 ... A9WSF5
    O27985
    26510127
    90453 5d92:B (3.62) BS01 MG ?
    2.7.8.-
    GO:0008654 ... A9WSF5
    O27985
    26510127
    90454 5d92:B (3.62) BS02 MG ?
    2.7.8.-
    GO:0008654 ... A9WSF5
    O27985
    26510127
    90455 5d92:C (3.62) BS01 MG ?
    2.7.8.-
    GO:0008654 ... A9WSF5
    O27985
    26510127
    90456 5d92:C (3.62) BS02 MG ?
    2.7.8.-
    GO:0008654 ... A9WSF5
    O27985
    26510127
    90457 5d92:D (3.62) BS01 MG ?
    2.7.8.-
    GO:0008654 ... A9WSF5
    O27985
    26510127
    90458 5d92:D (3.62) BS02 MG ?
    2.7.8.-
    GO:0008654 ... A9WSF5
    O27985
    26510127
    90459 5d98:A (3.9) BS01 MG 3.1.-.- GO:0003723 ... Q9IMP5 26503046
    90460 5d98:A (3.9) BS02 MG 3.1.-.- GO:0003723 ... Q9IMP5 26503046
    90461 5d98:D (3.9) BS01 MG 3.1.-.- GO:0003723 ... Q9IMP5 26503046
    90462 5d9b:A (1.5) BS01 MG ? GO:0004341 ... Q95YI4 26360462
    90463 5d9c:A (1.6) BS01 MG ? GO:0004341 ... Q95YI4 26360462
    90464 5d9d:A (1.701) BS01 MG ? GO:0004341 ... Q95YI4 26360462
    90465 5d9h:A (3.1) BS02 MG 2.7.11.1 GO:0004672 ... Q9Z1W9 26208601
    90466 5d9h:B (3.1) BS02 MG 2.7.11.1 GO:0004672 ... Q9Z1W9 26208601
    90467 5d9i:B (1.7) BS02 CA 3.6.4.- GO:0003688 ... P03070 20980496
    90468 5d9j:A (1.85) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    90469 5d9j:A (1.85) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    90470 5d9o:B (1.55) BS04 CA ? GO:0000272 ... O06842 26507654
    90471 5d9v:A (1.69) BS01 CA 1.8.5.1
    2.5.1.18
    GO:0004364 ... Q65XA0 26775680
    90472 5d9v:A (1.69) BS02 CA 1.8.5.1
    2.5.1.18
    GO:0004364 ... Q65XA0 26775680
    90473 5d9x:A (1.68) BS02 CA 1.8.5.1
    2.5.1.18
    GO:0004364 ... Q65XA0 26775680
    90474 5d9y:A (1.971) BS03 FE 1.14.11.80 GO:0006211 ... Q6N021 26524525
    90475 5d9y:A (1.971) BS04 ZN 1.14.11.80 GO:0006211 ... Q6N021 26524525
    90476 5d9y:A (1.971) BS05 ZN 1.14.11.80 GO:0006211 ... Q6N021 26524525
    90477 5d9y:A (1.971) BS06 ZN 1.14.11.80 GO:0006211 ... Q6N021 26524525
    90478 5da5:A (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90479 5da5:A (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90480 5da5:B (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90481 5da5:B (2.064) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90482 5da5:C (2.064) BS01 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90483 5da5:C (2.064) BS02 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90484 5da5:D (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90485 5da5:D (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90486 5da5:D (2.064) BS04 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90487 5da5:D (2.064) BS05 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90488 5da5:E (2.064) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90489 5da5:E (2.064) BS03 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90490 5da5:F (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90491 5da5:F (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90492 5da5:G (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90493 5da5:G (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90494 5da5:H (2.064) BS02 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90495 5da5:H (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90496 5da5:I (2.064) BS02 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90497 5da5:J (2.064) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90498 5da5:J (2.064) BS03 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90499 5da5:K (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90500 5da5:K (2.064) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90501 5da5:L (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90502 5da5:L (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90503 5da5:L (2.064) BS04 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90504 5da5:M (2.064) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90505 5da5:M (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90506 5da5:M (2.064) BS04 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90507 5da5:N (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90508 5da5:N (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90509 5da5:O (2.064) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90510 5da5:O (2.064) BS03 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90511 5da5:P (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90512 5da5:P (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90513 5da5:Q (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90514 5da5:Q (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90515 5da5:R (2.064) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90516 5da5:R (2.064) BS03 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90517 5da5:S (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90518 5da5:S (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90519 5da5:T (2.064) BS01 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90520 5da5:T (2.064) BS02 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90521 5da5:U (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90522 5da5:U (2.064) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90523 5da5:V (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90524 5da5:V (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90525 5da5:W (2.064) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90526 5da5:W (2.064) BS03 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90527 5da5:X (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90528 5da5:X (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90529 5da5:Y (2.064) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90530 5da5:Y (2.064) BS03 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90531 5da5:Z (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90532 5da5:Z (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90533 5da5:a (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90534 5da5:a (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90535 5da5:b (2.064) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90536 5da5:b (2.064) BS03 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90537 5da5:c (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90538 5da5:c (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90539 5da5:d (2.064) BS01 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90540 5da5:d (2.064) BS02 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    90541 5da8:M (3.0) BS01 MG 5.6.1.7 GO:0005524 ... Q8KF02 N/A
    90542 5da8:Q (3.0) BS01 MG 5.6.1.7 GO:0005524 ... Q8KF02 N/A
    90543 5da8:V (3.0) BS01 MG 5.6.1.7 GO:0005524 ... Q8KF02 N/A
    90544 5da9:A (3.0) BS01 MG 3.6.-.- GO:0006302 ... G0SHW7 26896444
    90545 5da9:B (3.0) BS02 MG 3.6.-.- GO:0006302 ... G0SHW7 26896444
    90546 5dab:A (2.1) BS01 FE2 1.14.11.-
    1.14.11.53
    GO:0001659 ... Q9C0B1 N/A
    90547 5dac:A (2.503) BS02 MG 3.6.-.- GO:0006302 ... G0SHW7 26896444
    90548 5dac:B (2.503) BS02 MG 3.6.-.- GO:0006302 ... G0SHW7 26896444
    90549 5dag:A (1.6) BS01 ZN ? N/A P55197 26439302
    90550 5dag:A (1.6) BS02 ZN ? N/A P55197 26439302
    90551 5dag:A (1.6) BS03 ZN ? N/A P55197 26439302
    90552 5dag:A (1.6) BS04 ZN ? N/A P55197 26439302
    90553 5dag:A (1.6) BS05 ZN ? N/A P55197 26439302
    90554 5dah:A (2.611) BS02 ZN ? N/A P55197 26439302
    90555 5dah:A (2.611) BS03 ZN ? N/A P55197 26439302
    90556 5dah:A (2.611) BS04 ZN ? N/A P55197 26439302
    90557 5dah:A (2.611) BS05 ZN ? N/A P55197 26439302
    90558 5dah:A (2.611) BS06 ZN ? N/A P55197 26439302
    90559 5dah:B (2.611) BS02 ZN ? N/A P55197 26439302
    90560 5dah:B (2.611) BS03 ZN ? N/A P55197 26439302
    90561 5dah:B (2.611) BS04 ZN ? N/A P55197 26439302
    90562 5dah:B (2.611) BS05 ZN ? N/A P55197 26439302
    90563 5dah:B (2.611) BS06 ZN ? N/A P55197 26439302
    90564 5dat:C8 (3.15) BS02 MG ? GO:0000054 ... P0CX55 N/A
    90565 5dat:D6 (3.15) BS02 ZN ? GO:0003735 ... P39939 N/A
    90566 5dat:D9 (3.15) BS02 MG ? GO:0002181 ... P41057 N/A
    90567 5dat:D9 (3.15) BS03 ZN ? GO:0002181 ... P41057 N/A
    90568 5dat:D9 (3.15) BS04 MG ? GO:0002181 ... P41057 N/A
    90569 5dat:E1 (3.15) BS02 ZN ? GO:0003735 ... P05759 N/A
    90570 5dat:L2 (3.15) BS03 MG ? GO:0002181 ... P0CX45 N/A
    90571 5dat:L7 (3.15) BS03 MG ? GO:0000463 ... P05737 N/A
    90572 5dat:M6 (3.15) BS02 MG ? GO:0000470 ... P26784 N/A
    90573 5dat:M7 (3.15) BS03 MG ? GO:0000448 ... P05740 N/A
    90574 5dat:M7 (3.15) BS04 MG ? GO:0000448 ... P05740 N/A
    90575 5dat:M9 (3.15) BS03 MG ? GO:0002181 ... P0CX82 N/A
    90576 5dat:N1 (3.15) BS03 MG ? GO:0002181 ... Q02753 N/A
    90577 5dat:N5 (3.15) BS03 MG ? GO:0000027 ... P04456 N/A
    90578 5dat:N6 (3.15) BS03 MG ? GO:0002181 ... P05743 N/A
    90579 5dat:N8 (3.15) BS02 MG ? GO:0002181 ... P02406 N/A
    90580 5dat:N8 (3.15) BS03 MG ? GO:0002181 ... P02406 N/A
    90581 5dat:O2 (3.15) BS02 MG ? GO:0002181 ... P38061 N/A
    90582 5dat:O4 (3.15) BS02 MG ? GO:0002181 ... P87262 N/A
    90583 5dat:O5 (3.15) BS03 MG ? GO:0000463 ... P0CX84 N/A
    90584 5dat:O7 (3.15) BS05 ZN ? GO:0000448 ... P49166 N/A
    90585 5dat:O7 (3.15) BS06 MG ? GO:0000448 ... P49166 N/A
    90586 5dat:O9 (3.15) BS03 MG ? GO:0002181 ... P04650 N/A
    90587 5dat:Q0 (3.15) BS02 ZN ? GO:0003735 ... P0CH08 N/A
    90588 5dat:Q0 (3.15) BS03 MG ? GO:0003735 ... P0CH08 N/A
    90589 5dat:Q2 (3.15) BS02 ZN ? GO:0002181 ... P0CX27 N/A
    90590 5dat:Q3 (3.15) BS02 ZN ? GO:0002181 ... P0CX25 N/A
    90591 5dat:c8 (3.15) BS02 MG ? GO:0000054 ... P0CX55 N/A
    90592 5dat:c9 (3.15) BS02 MG ? GO:0000028 ... P07280 N/A
    90593 5dat:d6 (3.15) BS02 ZN ? GO:0003735 ... P39939 N/A
    90594 5dat:d6 (3.15) BS03 MG ? GO:0003735 ... P39939 N/A
    90595 5dat:d9 (3.15) BS02 ZN ? GO:0002181 ... P41057 N/A
    90596 5dat:l2 (3.15) BS03 MG ? GO:0002181 ... P0CX45 N/A
    90597 5dat:l2 (3.15) BS04 MG ? GO:0002181 ... P0CX45 N/A
    90598 5dat:l2 (3.15) BS05 MG ? GO:0002181 ... P0CX45 N/A
    90599 5dat:l3 (3.15) BS02 MG ? GO:0000027 ... P14126 N/A
    90600 5dat:l5 (3.15) BS03 MG ? GO:0000027 ... P26321 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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