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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    90201 5d4g:A (2.08) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    90202 5d4g:A (2.08) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    90203 5d4h:A (1.3) BS01 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    90204 5d4h:A (1.3) BS02 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    90205 5d4h:B (1.3) BS02 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    90206 5d4h:B (1.3) BS03 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    90207 5d4h:C (1.3) BS03 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    90208 5d4h:C (1.3) BS04 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    90209 5d4i:A (1.6) BS01 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    90210 5d4i:A (1.6) BS02 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    90211 5d4i:B (1.6) BS02 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    90212 5d4i:B (1.6) BS03 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    90213 5d4i:C (1.6) BS02 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    90214 5d4i:C (1.6) BS03 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    90215 5d4j:A (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    90216 5d4j:A (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    90217 5d4j:B (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    90218 5d4j:B (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    90219 5d4j:C (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    90220 5d4j:C (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    90221 5d51:L (1.47) BS02 MG 1.12.99.6 GO:0005515 ... P31891 26913499
    90222 5d56:D (2.8) BS02 ZN 2.7.1.107 GO:0004143 ... P0ABN1 26894538
    90223 5d5d:A (2.4) BS01 CA ? N/A P18895 26894538
    90224 5d5g:A (1.74) BS01 MG ? N/A R9RL27 N/A
    90225 5d5g:A (1.74) BS02 MG ? N/A R9RL27 N/A
    90226 5d5g:B (1.74) BS01 MG ? N/A R9RL27 N/A
    90227 5d5g:B (1.74) BS02 MG ? N/A R9RL27 N/A
    90228 5d5g:B (1.74) BS03 MG ? N/A R9RL27 N/A
    90229 5d5n:B (2.44) BS01 ZN ? GO:0046765 ... F5HFZ4 26432641
    90230 5d5v:B (2.55) BS03 MG ? GO:0003700 ... Q00613 26727489
    90231 5d5v:D (2.55) BS03 MG ? GO:0003700 ... Q00613 26727489
    90232 5d61:A (1.6) BS08 CA ? GO:0046872 ... Q8X123 26901797
    90233 5d61:A (1.6) BS09 CA ? GO:0046872 ... Q8X123 26901797
    90234 5d62:A (1.7) BS08 CA ? GO:0046872 ... Q8X123 26901797
    90235 5d62:A (1.7) BS09 CA ? GO:0046872 ... Q8X123 26901797
    90236 5d63:A (1.65) BS08 CA ? GO:0046872 ... Q8X123 26901797
    90237 5d63:A (1.65) BS09 CA ? GO:0046872 ... Q8X123 26901797
    90238 5d69:A (1.97) BS01 CA ? GO:0005509 ... P04632 28757975
    90239 5d69:A (1.97) BS02 CA ? GO:0005509 ... P04632 28757975
    90240 5d69:A (1.97) BS03 CA ? GO:0005509 ... P04632 28757975
    90241 5d69:A (1.97) BS04 CA ? GO:0005509 ... P04632 28757975
    90242 5d69:B (1.97) BS01 CA ? GO:0005509 ... P04632 28757975
    90243 5d69:B (1.97) BS02 CA ? GO:0005509 ... P04632 28757975
    90244 5d69:B (1.97) BS03 CA ? GO:0005509 ... P04632 28757975
    90245 5d69:B (1.97) BS04 CA ? GO:0005509 ... P04632 28757975
    90246 5d6c:A (1.72) BS01 CA N/A N/A N/A 26536114
    90247 5d6c:B (1.72) BS01 CA N/A N/A N/A 26536114
    90248 5d6c:H (1.72) BS01 CA N/A N/A N/A 26536114
    90249 5d6c:L (1.72) BS01 CA N/A N/A N/A 26536114
    90250 5d6c:L (1.72) BS02 CA N/A N/A N/A 26536114
    90251 5d6e:A (1.49) BS02 CO 3.4.11.18 GO:0006508 ... P50579 26686773
    90252 5d6e:A (1.49) BS03 CO 3.4.11.18 GO:0006508 ... P50579 26686773
    90253 5d6f:A (1.55) BS02 CO 3.4.11.18 GO:0006508 ... P50579 26686773
    90254 5d6q:B (1.5) BS02 MG 5.6.2.2 GO:0003677 ... P0A0K8 26460684
    90255 5d6r:B (2.276) BS01 MG 2.2.1.6 GO:0000287 ... P27696 N/A
    90256 5d6r:B (2.276) BS02 MG 2.2.1.6 GO:0000287 ... P27696 N/A
    90257 5d6r:M (2.276) BS01 MG 2.2.1.6 GO:0000287 ... P27696 N/A
    90258 5d6r:M (2.276) BS02 MG 2.2.1.6 GO:0000287 ... P27696 N/A
    90259 5d7c:B (1.55) BS02 MG 5.6.2.2 GO:0003677 ... P0A0K8 26460684
    90260 5d7c:B (1.55) BS03 MG 5.6.2.2 GO:0003677 ... P0A0K8 26460684
    90261 5d7d:B (1.6) BS01 MG 5.6.2.2 GO:0003677 ... P0A0K8 26487916
    90262 5d7d:B (1.6) BS02 MG 5.6.2.2 GO:0003677 ... P0A0K8 26487916
    90263 5d7f:A (1.3) BS02 CA ? GO:0001726 ... P04271 N/A
    90264 5d7f:A (1.3) BS03 CA ? GO:0001726 ... P04271 N/A
    90265 5d7f:B (1.3) BS01 CA ? GO:0001726 ... P04271 N/A
    90266 5d7f:B (1.3) BS02 CA ? GO:0001726 ... P04271 N/A
    90267 5d7n:A (1.83) BS01 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 26625292
    90268 5d7n:B (1.83) BS01 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 26625292
    90269 5d7n:C (1.83) BS01 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 26625292
    90270 5d7n:D (1.83) BS01 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 26625292
    90271 5d7n:E (1.83) BS01 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 26625292
    90272 5d7n:F (1.83) BS01 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 26625292
    90273 5d7o:A (1.63) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 26625292
    90274 5d7o:B (1.63) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 26625292
    90275 5d7p:A (1.76) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 26625292
    90276 5d7p:B (1.76) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 26625292
    90277 5d7q:A (2.01) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 26625292
    90278 5d7q:B (2.01) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 26625292
    90279 5d7r:A (1.55) BS01 MG 5.6.2.2 GO:0003677 ... P0A0K8 26487916
    90280 5d7r:B (1.55) BS01 MG 5.6.2.2 GO:0003677 ... P0A0K8 26487916
    90281 5d7r:B (1.55) BS02 MG 5.6.2.2 GO:0003677 ... P0A0K8 26487916
    90282 5d7w:A (1.1) BS01 ZN 3.4.24.40 GO:0001907 ... P23694 26750478
    90283 5d7w:A (1.1) BS02 CA 3.4.24.40 GO:0001907 ... P23694 26750478
    90284 5d7w:A (1.1) BS03 CA 3.4.24.40 GO:0001907 ... P23694 26750478
    90285 5d7w:A (1.1) BS04 CA 3.4.24.40 GO:0001907 ... P23694 26750478
    90286 5d7w:A (1.1) BS05 CA 3.4.24.40 GO:0001907 ... P23694 26750478
    90287 5d7w:A (1.1) BS06 CA 3.4.24.40 GO:0001907 ... P23694 26750478
    90288 5d7w:A (1.1) BS07 CA 3.4.24.40 GO:0001907 ... P23694 26750478
    90289 5d7w:A (1.1) BS08 CA 3.4.24.40 GO:0001907 ... P23694 26750478
    90290 5d7z:A (1.73) BS01 NI 4.4.1.5 GO:0004462 ... B6TPH0 26457425
    90291 5d86:A (1.5) BS02 MG 2.5.1.140 GO:0004124 ... A6QDA0 26794841
    90292 5d88:A (1.66) BS01 ZN ? GO:0006508 ... Q8TWX5 26627657
    90293 5d8b:B (3.63) BS02 MG ? GO:0003735 ... Q5SHN8 26412335
    90294 5d8b:BA (3.63) BS02 MG ? GO:0003735 ... Q5SKU1 26412335
    90295 5d8b:BB (3.63) BS03 MG ? GO:0003735 ... Q5SLQ1 26412335
    90296 5d8b:DC (3.63) BS03 MG ? GO:0000028 ... P17291 26412335
    90297 5d8b:EB (3.63) BS03 MG ? GO:0003735 ... Q5SHP8 26412335
    90298 5d8b:HB (3.63) BS02 MG ? GO:0003735 ... Q9Z9H5 26412335
    90299 5d8b:IB (3.63) BS03 MG ? GO:0003735 ... Q5SHQ4 26412335
    90300 5d8b:UA (3.63) BS02 MG ? GO:0003723 ... P80380 26412335
    90301 5d8b:WA (3.63) BS02 MG ? GO:0002181 ... P60405 26412335
    90302 5d8b:YA (3.63) BS02 MG ? GO:0003735 ... Q5SHN9 26412335
    90303 5d8g:A (1.89) BS01 MG 4.1.99.1 GO:0003824 ... P0A853 26627645
    90304 5d8g:A (1.89) BS02 CA 4.1.99.1 GO:0003824 ... P0A853 26627645
    90305 5d8h:C (2.8) BS02 MG ? GO:0003735 ... P54030 N/A
    90306 5d8n:A (2.15) BS01 MG 3.4.11.1
    3.4.11.5
    GO:0000287 ... Q10712 27139632
    90307 5d8n:B (2.15) BS01 MG 3.4.11.1
    3.4.11.5
    GO:0000287 ... Q10712 27139632
    90308 5d8n:C (2.15) BS01 MG 3.4.11.1
    3.4.11.5
    GO:0000287 ... Q10712 27139632
    90309 5d8p:A (2.35) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90310 5d8p:A (2.35) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90311 5d8p:A (2.35) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90312 5d8p:B (2.35) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90313 5d8p:B (2.35) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90314 5d8p:B (2.35) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90315 5d8p:C (2.35) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90316 5d8p:C (2.35) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90317 5d8p:C (2.35) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90318 5d8p:C (2.35) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90319 5d8p:D (2.35) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90320 5d8p:D (2.35) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90321 5d8p:D (2.35) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90322 5d8p:D (2.35) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90323 5d8p:D (2.35) BS05 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90324 5d8p:E (2.35) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90325 5d8p:E (2.35) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90326 5d8p:E (2.35) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90327 5d8p:F (2.35) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90328 5d8p:F (2.35) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90329 5d8p:F (2.35) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90330 5d8p:G (2.35) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90331 5d8p:G (2.35) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90332 5d8p:G (2.35) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90333 5d8p:G (2.35) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90334 5d8p:H (2.35) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90335 5d8p:H (2.35) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90336 5d8p:H (2.35) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90337 5d8p:H (2.35) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90338 5d8p:H (2.35) BS05 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90339 5d8p:I (2.35) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90340 5d8p:I (2.35) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90341 5d8p:I (2.35) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90342 5d8p:I (2.35) BS05 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90343 5d8p:J (2.35) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90344 5d8p:J (2.35) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90345 5d8p:J (2.35) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90346 5d8p:K (2.35) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90347 5d8p:K (2.35) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90348 5d8p:K (2.35) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90349 5d8p:K (2.35) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90350 5d8p:L (2.35) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90351 5d8p:L (2.35) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90352 5d8p:L (2.35) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90353 5d8p:L (2.35) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90354 5d8u:A (2.29) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    90355 5d8u:A (2.29) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    90356 5d8y:A (2.05) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90357 5d8y:A (2.05) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90358 5d8y:A (2.05) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90359 5d8y:B (2.05) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90360 5d8y:B (2.05) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90361 5d8y:B (2.05) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90362 5d8y:B (2.05) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90363 5d8y:C (2.05) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90364 5d8y:C (2.05) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90365 5d8y:C (2.05) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90366 5d8y:C (2.05) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90367 5d8y:D (2.05) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90368 5d8y:D (2.05) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90369 5d8y:D (2.05) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90370 5d8y:D (2.05) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90371 5d8y:E (2.05) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90372 5d8y:E (2.05) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90373 5d8y:E (2.05) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90374 5d8y:E (2.05) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90375 5d8y:F (2.05) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90376 5d8y:F (2.05) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90377 5d8y:F (2.05) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90378 5d8y:F (2.05) BS05 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90379 5d8y:G (2.05) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90380 5d8y:G (2.05) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90381 5d8y:G (2.05) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90382 5d8y:G (2.05) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90383 5d8y:H (2.05) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90384 5d8y:H (2.05) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90385 5d8y:H (2.05) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90386 5d8y:H (2.05) BS05 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90387 5d8y:I (2.05) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90388 5d8y:I (2.05) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90389 5d8y:I (2.05) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90390 5d8y:I (2.05) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90391 5d8y:J (2.05) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90392 5d8y:J (2.05) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90393 5d8y:J (2.05) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90394 5d8y:J (2.05) BS05 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90395 5d8y:K (2.05) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90396 5d8y:K (2.05) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90397 5d8y:K (2.05) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90398 5d8y:L (2.05) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90399 5d8y:L (2.05) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    90400 5d8y:L (2.05) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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