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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    90001 5czt:C (2.04) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90002 5czt:D (2.04) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90003 5czv:A (3.19) BS01 CA ? GO:0006355 ... Q9UM47 27157619
    90004 5czv:A (3.19) BS02 CA ? GO:0006355 ... Q9UM47 27157619
    90005 5czv:A (3.19) BS03 CA ? GO:0006355 ... Q9UM47 27157619
    90006 5czw:A (1.6) BS01 ZN ? GO:0004222 ... B5B0E6 28188295
    90007 5czx:A (2.1) BS01 CA ? GO:0006355 ... Q9UM47 27157619
    90008 5czx:A (2.1) BS02 CA ? GO:0006355 ... Q9UM47 27157619
    90009 5czx:A (2.1) BS03 CA ? GO:0006355 ... Q9UM47 27157619
    90010 5czx:B (2.1) BS01 CA ? GO:0006355 ... Q9UM47 27157619
    90011 5czx:B (2.1) BS02 CA ? GO:0006355 ... Q9UM47 27157619
    90012 5czx:B (2.1) BS03 CA ? GO:0006355 ... Q9UM47 27157619
    90013 5d02:A (1.87) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90014 5d02:B (1.87) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90015 5d02:C (1.87) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90016 5d02:D (1.87) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90017 5d03:A (1.84) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90018 5d03:B (1.84) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90019 5d03:C (1.84) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90020 5d03:D (1.84) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90021 5d04:C (1.7) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90022 5d04:D (1.7) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90023 5d05:A (1.75) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90024 5d05:B (1.75) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90025 5d05:C (1.75) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90026 5d05:D (1.75) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90027 5d09:A (2.35) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90028 5d09:B (2.35) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90029 5d09:C (2.35) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90030 5d09:D (2.35) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90031 5d0e:A (1.48) BS01 CA N/A GO:0009190 ... N/A 27542992
    90032 5d0e:B (1.48) BS03 CA N/A GO:0009190 ... N/A 27542992
    90033 5d0g:A (1.6) BS02 CA N/A GO:0009190 ... N/A 27542992
    90034 5d0g:B (1.6) BS03 CA N/A GO:0009190 ... N/A 27542992
    90035 5d0h:A (2.1) BS02 CA N/A GO:0009190 ... N/A 27542992
    90036 5d0h:B (2.1) BS03 CA N/A GO:0009190 ... N/A 27542992
    90037 5d0i:A (1.9) BS01 ZN 2.3.2.27 GO:0008270 ... Q6ZSG1 26656854
    90038 5d0i:A (1.9) BS02 ZN 2.3.2.27 GO:0008270 ... Q6ZSG1 26656854
    90039 5d0i:B (1.9) BS01 ZN 2.3.2.27 GO:0008270 ... Q6ZSG1 26656854
    90040 5d0i:B (1.9) BS02 ZN 2.3.2.27 GO:0008270 ... Q6ZSG1 26656854
    90041 5d0k:C (2.65) BS01 ZN 2.3.2.27 GO:0008270 ... Q6ZSG1 26656854
    90042 5d0k:C (2.65) BS02 ZN 2.3.2.27 GO:0008270 ... Q6ZSG1 26656854
    90043 5d0k:F (2.65) BS01 ZN 2.3.2.27 GO:0008270 ... Q6ZSG1 26656854
    90044 5d0k:F (2.65) BS02 ZN 2.3.2.27 GO:0008270 ... Q6ZSG1 26656854
    90045 5d0k:I (2.65) BS01 ZN 2.3.2.27 GO:0008270 ... Q6ZSG1 26656854
    90046 5d0k:I (2.65) BS02 ZN 2.3.2.27 GO:0008270 ... Q6ZSG1 26656854
    90047 5d0k:L (2.65) BS01 ZN 2.3.2.27 GO:0008270 ... Q6ZSG1 26656854
    90048 5d0k:L (2.65) BS02 ZN 2.3.2.27 GO:0008270 ... Q6ZSG1 26656854
    90049 5d0m:C (1.913) BS01 ZN 2.3.2.27 GO:0008270 ... Q6ZSG1 26656854
    90050 5d0m:C (1.913) BS02 ZN 2.3.2.27 GO:0008270 ... Q6ZSG1 26656854
    90051 5d0n:A (3.2) BS02 MG 2.7.11.32
    2.7.4.27
    GO:0000166 ... Q195N6 26620526
    90052 5d0s:G (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26964885
    90053 5d0s:I (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26964885
    90054 5d0s:K (2.5) BS02 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    90055 5d0s:N (2.5) BS02 MG 3.4.25.1 GO:0000502 ... P38624 26964885
    90056 5d0s:V (2.5) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26964885
    90057 5d0s:Y (2.5) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    90058 5d0s:Z (2.5) BS02 MG 3.4.25.1 GO:0000502 ... P23724 26964885
    90059 5d0t:G (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26964885
    90060 5d0t:I (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26964885
    90061 5d0t:K (2.6) BS02 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    90062 5d0t:M (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P30657 26964885
    90063 5d0t:N (2.6) BS02 MG 3.4.25.1 GO:0000502 ... P38624 26964885
    90064 5d0t:V (2.6) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26964885
    90065 5d0t:Y (2.6) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    90066 5d0t:Z (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26964885
    90067 5d0v:G (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26964885
    90068 5d0v:I (2.9) BS02 MG 3.4.25.1 GO:0000502 ... P25451 26964885
    90069 5d0v:K (2.9) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    90070 5d0v:V (2.9) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26964885
    90071 5d0v:Y (2.9) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    90072 5d0v:Z (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26964885
    90073 5d0w:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26964885
    90074 5d0w:I (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26964885
    90075 5d0w:K (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    90076 5d0w:N (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P38624 26964885
    90077 5d0w:V (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26964885
    90078 5d0w:Y (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    90079 5d0w:Z (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26964885
    90080 5d0x:G (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26964885
    90081 5d0x:K (2.6) BS02 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    90082 5d0x:N (2.6) BS02 MG 3.4.25.1 GO:0000502 ... P38624 26964885
    90083 5d0x:V (2.6) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26964885
    90084 5d0x:Y (2.6) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    90085 5d0x:Z (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26964885
    90086 5d0z:G (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26964885
    90087 5d0z:I (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26964885
    90088 5d0z:K (2.9) BS02 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    90089 5d0z:N (2.9) BS02 MG 3.4.25.1 GO:0000502 ... P38624 26964885
    90090 5d0z:Y (2.9) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    90091 5d0z:Z (2.9) BS02 MG 3.4.25.1 GO:0000502 ... P23724 26964885
    90092 5d0z:b (2.9) BS02 MG 3.4.25.1 GO:0000502 ... P38624 26964885
    90093 5d15:A (1.5) BS02 CA N/A GO:0009190 ... N/A 27542992
    90094 5d15:B (1.5) BS03 CA N/A GO:0009190 ... N/A 27542992
    90095 5d1b:A (2.9) BS01 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26463496
    90096 5d1b:B (2.9) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26463496
    90097 5d1c:A (1.422) BS03 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26463496
    90098 5d1c:B (1.422) BS03 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26463496
    90099 5d1d:A (2.011) BS03 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26463496
    90100 5d1d:B (2.011) BS03 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26463496
    90101 5d1f:A (3.4) BS02 MG 2.7.11.32
    2.7.4.27
    GO:0000166 ... Q195N6 26620526
    90102 5d1k:B (1.78) BS01 ZN 2.3.2.27 GO:0061630 ... Q96BH1 26475854
    90103 5d1k:B (1.78) BS02 ZN 2.3.2.27 GO:0061630 ... Q96BH1 26475854
    90104 5d1l:B (1.618) BS01 ZN 2.3.2.27 GO:0061630 ... Q96BH1 26475854
    90105 5d1l:B (1.618) BS02 ZN 2.3.2.27 GO:0061630 ... Q96BH1 26475854
    90106 5d1m:B (1.581) BS01 ZN 2.3.2.27 GO:0061630 ... Q96BH1 26475854
    90107 5d1m:B (1.581) BS02 ZN 2.3.2.27 GO:0061630 ... Q96BH1 26475854
    90108 5d1o:B (2.648) BS04 MG ? GO:0005524 ... O27289 26896806
    90109 5d1r:A (2.0) BS01 MG ? GO:0000976 ... P9WMC9 26396194
    90110 5d1r:B (2.0) BS02 MG ? GO:0000976 ... P9WMC9 26396194
    90111 5d1s:A (2.1) BS02 ZN 3.4.24.83 GO:0008237 ... P15917 26492514
    90112 5d1t:A (2.2) BS01 ZN 3.4.24.83 GO:0008237 ... P15917 26492514
    90113 5d1u:A (2.8503) BS02 ZN 3.4.24.83 GO:0008237 ... P15917 26492514
    90114 5d21:A (1.9) BS01 CA ? GO:0005737 ... Q05097 26416170
    90115 5d21:B (1.9) BS01 CA ? GO:0005737 ... Q05097 26416170
    90116 5d21:C (1.9) BS01 CA ? GO:0005737 ... Q05097 26416170
    90117 5d21:D (1.9) BS01 CA ? GO:0005737 ... Q05097 26416170
    90118 5d29:A (1.8) BS01 ZN 3.4.17.21 GO:0004180 ... Q04609 27074627
    90119 5d29:A (1.8) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 27074627
    90120 5d29:A (1.8) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 27074627
    90121 5d2a:A (2.134) BS02 CA ? GO:0030246 ... Q9HYN5 29896342
    90122 5d2a:A (2.134) BS03 CA ? GO:0030246 ... Q9HYN5 29896342
    90123 5d2a:B (2.134) BS01 CA ? GO:0030246 ... Q9HYN5 29896342
    90124 5d2a:B (2.134) BS02 CA ? GO:0030246 ... Q9HYN5 29896342
    90125 5d2b:A (1.2) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 27996256
    90126 5d2b:A (1.2) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 27996256
    90127 5d2b:A (1.2) BS03 CA 3.4.24.65 GO:0004222 ... P39900 27996256
    90128 5d2b:A (1.2) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27996256
    90129 5d2b:A (1.2) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27996256
    90130 5d2c:A (2.06) BS01 MN ? GO:0000155 ... P0AE68 26569142
    90131 5d2c:B (2.06) BS01 MN ? GO:0000155 ... P0AE68 26569142
    90132 5d2g:A (1.897) BS01 MG 4.1.1.77 GO:0003824 ... Q1XGK3 27082660
    90133 5d2h:A (1.936) BS01 MG 4.1.1.77 GO:0003824 ... Q1XGK3 27082660
    90134 5d2i:A (1.78) BS01 CA 4.1.1.77 GO:0003824 ... Q1XGK3 27082660
    90135 5d2i:A (1.78) BS02 CA 4.1.1.77 GO:0003824 ... Q1XGK3 27082660
    90136 5d2i:B (1.78) BS01 CA 4.1.1.77 GO:0003824 ... Q1XGK3 27082660
    90137 5d2j:A (1.718) BS01 MG 4.1.1.77 GO:0003824 ... Q1XGK3 27082660
    90138 5d2j:B (1.718) BS01 MG 4.1.1.77 GO:0003824 ... Q1XGK3 27082660
    90139 5d2k:A (1.571) BS01 MG 4.1.1.77 GO:0003824 ... Q1XGK3 27082660
    90140 5d2k:B (1.571) BS01 MG 4.1.1.77 GO:0003824 ... Q1XGK3 27082660
    90141 5d2o:A (2.15) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    90142 5d2o:A (2.15) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    90143 5d2r:A (1.9) BS01 ZN ? GO:0046872 ... B5ZAD9 26735022
    90144 5d2r:A (1.9) BS02 ZN ? GO:0046872 ... B5ZAD9 26735022
    90145 5d2r:A (1.9) BS03 ZN ? GO:0046872 ... B5ZAD9 26735022
    90146 5d2u:A (1.8) BS01 CA 3.1.3.16 GO:0004722 ... Q8DGS1 N/A
    90147 5d2u:A (1.8) BS02 CA 3.1.3.16 GO:0004722 ... Q8DGS1 N/A
    90148 5d2u:A (1.8) BS03 CA 3.1.3.16 GO:0004722 ... Q8DGS1 N/A
    90149 5d2u:A (1.8) BS04 CA 3.1.3.16 GO:0004722 ... Q8DGS1 N/A
    90150 5d3c:A (1.314) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 27996256
    90151 5d3c:A (1.314) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 27996256
    90152 5d3c:A (1.314) BS03 CA 3.4.24.65 GO:0004222 ... P39900 27996256
    90153 5d3c:A (1.314) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27996256
    90154 5d3c:A (1.314) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27996256
    90155 5d3k:A (1.7) BS01 CA 2.3.1.94 GO:0009058 ... Q03133 26592346
    90156 5d3k:A (1.7) BS02 CA 2.3.1.94 GO:0009058 ... Q03133 26592346
    90157 5d41:A (2.31) BS01 MG 2.7.10.1 GO:0004672 ... P00533 27251290
    90158 5d41:B (2.31) BS01 MG 2.7.10.1 GO:0004672 ... P00533 27251290
    90159 5d42:A (2.0) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    90160 5d42:A (2.0) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    90161 5d43:A (2.82) BS01 CA ? GO:0000922 ... P41209 29037133
    90162 5d43:A (2.82) BS02 CA ? GO:0000922 ... P41209 29037133
    90163 5d43:A (2.82) BS03 CA ? GO:0000922 ... P41209 29037133
    90164 5d43:A (2.82) BS04 CA ? GO:0000922 ... P41209 29037133
    90165 5d43:B (2.82) BS01 CA ? GO:0000922 ... P41209 29037133
    90166 5d43:B (2.82) BS02 CA ? GO:0000922 ... P41209 29037133
    90167 5d43:B (2.82) BS03 CA ? GO:0000922 ... P41209 29037133
    90168 5d43:B (2.82) BS04 CA ? GO:0000922 ... P41209 29037133
    90169 5d46:A (2.8) BS05 MG 2.7.7.31
    3.1.11.-
    GO:0003677 ... P09838 27499438
    90170 5d49:A (1.99) BS05 MG 2.7.7.31
    3.1.11.-
    GO:0003677 ... P09838 27499438
    90171 5d4b:A (2.66) BS04 MG 2.7.7.31
    3.1.11.-
    GO:0003677 ... P09838 27499438
    90172 5d4b:B (2.66) BS04 MG 2.7.7.31
    3.1.11.-
    GO:0003677 ... P09838 27499438
    90173 5d4c:B (3.28) BS01 MG 2.7.7.6 GO:0000428 ... Q5SHR6 27383794
    90174 5d4c:D (3.28) BS02 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    90175 5d4c:D (3.28) BS03 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    90176 5d4c:D (3.28) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    90177 5d4c:F (3.28) BS03 MG ? GO:0003677 ... Q5SKW1 27383794
    90178 5d4c:K (3.28) BS01 MG 2.7.7.6 GO:0000428 ... Q5SHR6 27383794
    90179 5d4c:L (3.28) BS01 MG 2.7.7.6 GO:0000428 ... Q5SHR6 27383794
    90180 5d4c:N (3.28) BS02 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    90181 5d4c:N (3.28) BS03 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    90182 5d4c:N (3.28) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    90183 5d4c:P (3.28) BS03 MG ? GO:0003677 ... Q5SKW1 27383794
    90184 5d4d:D (3.0) BS02 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    90185 5d4d:D (3.0) BS03 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    90186 5d4d:D (3.0) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    90187 5d4d:F (3.0) BS03 MG ? GO:0003677 ... Q5SKW1 27383794
    90188 5d4d:L (3.0) BS01 MG 2.7.7.6 GO:0000428 ... Q5SHR6 27383794
    90189 5d4d:N (3.0) BS02 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    90190 5d4d:N (3.0) BS03 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    90191 5d4d:N (3.0) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    90192 5d4e:D (3.08) BS03 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    90193 5d4e:D (3.08) BS04 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    90194 5d4e:D (3.08) BS05 MG 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    90195 5d4e:F (3.08) BS03 MG ? GO:0003677 ... Q5SKW1 27383794
    90196 5d4e:N (3.08) BS03 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    90197 5d4e:N (3.08) BS04 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    90198 5d4e:N (3.08) BS05 MG 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    90199 5d4e:P (3.08) BS03 MG ? GO:0003677 ... Q5SKW1 27383794
    90200 5d4f:A (1.72) BS01 FE ? N/A D1A230 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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