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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    89801 5cz2:L (2.72) BS01 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    3.6.1.23    		 GO:0003676 ... P03365 26887496
    89802 5cz4:G (2.3) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26964885
    89803 5cz4:I (2.3) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26964885
    89804 5cz4:K (2.3) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    89805 5cz4:N (2.3) BS01 MG 3.4.25.1 GO:0000502 ... P38624 26964885
    89806 5cz4:V (2.3) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26964885
    89807 5cz4:W (2.3) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26964885
    89808 5cz4:Y (2.3) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    89809 5cz4:Z (2.3) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26964885
    89810 5cz5:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26964885
    89811 5cz5:I (2.8) BS02 MG 3.4.25.1 GO:0000502 ... P25451 26964885
    89812 5cz5:K (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    89813 5cz5:N (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P38624 26964885
    89814 5cz5:V (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26964885
    89815 5cz5:Y (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    89816 5cz5:Z (2.8) BS02 MG 3.4.25.1 GO:0000502 ... P23724 26964885
    89817 5cz6:G (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26964885
    89818 5cz6:I (2.7) BS02 MG 3.4.25.1 GO:0000502 ... P25451 26964885
    89819 5cz6:K (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    89820 5cz6:N (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P38624 26964885
    89821 5cz6:V (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26964885
    89822 5cz6:W (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26964885
    89823 5cz6:Y (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    89824 5cz6:Z (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26964885
    89825 5cz7:G (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26964885
    89826 5cz7:I (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26964885
    89827 5cz7:K (2.5) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    89828 5cz7:N (2.5) BS02 MG 3.4.25.1 GO:0000502 ... P38624 26964885
    89829 5cz7:V (2.5) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26964885
    89830 5cz7:Y (2.5) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    89831 5cz7:Z (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26964885
    89832 5cz8:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26964885
    89833 5cz8:K (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    89834 5cz8:N (2.8) BS02 MG 3.4.25.1 GO:0000502 ... P38624 26964885
    89835 5cz8:V (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26964885
    89836 5cz8:Y (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    89837 5cz8:Z (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26964885
    89838 5cz9:G (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26964885
    89839 5cz9:K (2.9) BS02 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    89840 5cz9:V (2.9) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26964885
    89841 5cz9:Y (2.9) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    89842 5cz9:Z (2.9) BS02 MG 3.4.25.1 GO:0000502 ... P23724 26964885
    89843 5cza:G (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26964885
    89844 5cza:I (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26964885
    89845 5cza:K (2.5) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    89846 5cza:N (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P38624 26964885
    89847 5cza:V (2.5) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26964885
    89848 5cza:W (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26964885
    89849 5cza:Y (2.5) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26964885
    89850 5cza:Z (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26964885
    89851 5czc:A (1.8) BS01 CA 2.3.1.39 GO:0004314 ... Q76KY5 26831085
    89852 5czm:A (1.303) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 27996256
    89853 5czm:A (1.303) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 27996256
    89854 5czm:A (1.303) BS03 CA 3.4.24.65 GO:0004222 ... P39900 27996256
    89855 5czm:A (1.303) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27996256
    89856 5czm:A (1.303) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27996256
    89857 5czn:A (1.98) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    89858 5czo:C (2.894) BS01 ZN ? N/A P40065 27491543
    89859 5czo:D (2.894) BS01 ZN ? N/A P40065 27491543
    89860 5czp:QB (3.29996) BS02 MG ? GO:0003735 ... P80371 27681416
    89861 5czp:QE (3.29996) BS02 MG ? GO:0003723 ... Q5SHQ5 27681416
    89862 5czp:QF (3.29996) BS02 MG ? GO:0003735 ... Q5SLP8 27681416
    89863 5czp:QK (3.29996) BS02 MG ? GO:0003735 ... P80376 27681416
    89864 5czp:QN (3.29996) BS02 ZN N/A GO:0003735 ... N/A 27681416
    89865 5czp:QN (3.29996) BS03 MG N/A GO:0003735 ... N/A 27681416
    89866 5czp:QT (3.29996) BS02 MG ? GO:0003723 ... P80380 27681416
    89867 5czp:QY (3.29996) BS05 MG ? GO:0003747 ... P07012 27681416
    89868 5czp:R0 (3.29996) BS04 MG ? GO:0003735 ... P60493 27681416
    89869 5czp:R0 (3.29996) BS05 MG ? GO:0003735 ... P60493 27681416
    89870 5czp:R0 (3.29996) BS06 MG ? GO:0003735 ... P60493 27681416
    89871 5czp:R1 (3.29996) BS02 MG ? GO:0003735 ... P60494 27681416
    89872 5czp:R3 (3.29996) BS03 MG ? GO:0003735 ... Q5SHQ6 27681416
    89873 5czp:R3 (3.29996) BS04 MG ? GO:0003735 ... Q5SHQ6 27681416
    89874 5czp:R3 (3.29996) BS05 MG ? GO:0003735 ... Q5SHQ6 27681416
    89875 5czp:R3 (3.29996) BS06 MG ? GO:0003735 ... Q5SHQ6 27681416
    89876 5czp:R4 (3.29996) BS02 ZN ? GO:0003735 ... Q5SJE1 27681416
    89877 5czp:R5 (3.29996) BS02 MG ? GO:0003735 ... P80339 27681416
    89878 5czp:R5 (3.29996) BS03 ZN ? GO:0003735 ... P80339 27681416
    89879 5czp:R6 (3.29996) BS02 ZN ? GO:0000049 ... P35871 27681416
    89880 5czp:R7 (3.29996) BS02 MG ? GO:0003735 ... P80340 27681416
    89881 5czp:R7 (3.29996) BS03 MG ? GO:0003735 ... P80340 27681416
    89882 5czp:R7 (3.29996) BS04 MG ? GO:0003735 ... P80340 27681416
    89883 5czp:R8 (3.29996) BS02 MG ? GO:0003735 ... Q5SKU1 27681416
    89884 5czp:R8 (3.29996) BS03 MG ? GO:0003735 ... Q5SKU1 27681416
    89885 5czp:R9 (3.29996) BS02 ZN ? GO:0003735 ... Q5SHR2 27681416
    89886 5czp:RD (3.29996) BS03 MG ? GO:0002181 ... P60405 27681416
    89887 5czp:RD (3.29996) BS04 MG ? GO:0002181 ... P60405 27681416
    89888 5czp:RD (3.29996) BS05 MG ? GO:0002181 ... P60405 27681416
    89889 5czp:RD (3.29996) BS06 MG ? GO:0002181 ... P60405 27681416
    89890 5czp:RD (3.29996) BS07 MG ? GO:0002181 ... P60405 27681416
    89891 5czp:RD (3.29996) BS08 MG ? GO:0002181 ... P60405 27681416
    89892 5czp:RD (3.29996) BS09 MG ? GO:0002181 ... P60405 27681416
    89893 5czp:RD (3.29996) BS10 MG ? GO:0002181 ... P60405 27681416
    89894 5czp:RD (3.29996) BS11 MG ? GO:0002181 ... P60405 27681416
    89895 5czp:RD (3.29996) BS12 MG ? GO:0002181 ... P60405 27681416
    89896 5czp:RD (3.29996) BS13 MG ? GO:0002181 ... P60405 27681416
    89897 5czp:RE (3.29996) BS02 MG ? GO:0003735 ... Q5SHN8 27681416
    89898 5czp:RE (3.29996) BS03 MG ? GO:0003735 ... Q5SHN8 27681416
    89899 5czp:RE (3.29996) BS04 MG ? GO:0003735 ... Q5SHN8 27681416
    89900 5czp:RE (3.29996) BS05 MG ? GO:0003735 ... Q5SHN8 27681416
    89901 5czp:RF (3.29996) BS02 MG ? GO:0003735 ... Q5SHN9 27681416
    89902 5czp:RF (3.29996) BS03 MG ? GO:0003735 ... Q5SHN9 27681416
    89903 5czp:RF (3.29996) BS04 MG ? GO:0003735 ... Q5SHN9 27681416
    89904 5czp:RF (3.29996) BS05 MG ? GO:0003735 ... Q5SHN9 27681416
    89905 5czp:RF (3.29996) BS06 MG ? GO:0003735 ... Q5SHN9 27681416
    89906 5czp:RF (3.29996) BS07 MG ? GO:0003735 ... Q5SHN9 27681416
    89907 5czp:RF (3.29996) BS08 MG ? GO:0003735 ... Q5SHN9 27681416
    89908 5czp:RF (3.29996) BS09 MG ? GO:0003735 ... Q5SHN9 27681416
    89909 5czp:RF (3.29996) BS10 MG ? GO:0003735 ... Q5SHN9 27681416
    89910 5czp:RF (3.29996) BS11 MG ? GO:0003735 ... Q5SHN9 27681416
    89911 5czp:RF (3.29996) BS12 MG ? GO:0003735 ... Q5SHN9 27681416
    89912 5czp:RF (3.29996) BS13 MG ? GO:0003735 ... Q5SHN9 27681416
    89913 5czp:RF (3.29996) BS14 MG ? GO:0003735 ... Q5SHN9 27681416
    89914 5czp:RG (3.29996) BS04 MG ? GO:0000049 ... Q5SHQ0 27681416
    89915 5czp:RG (3.29996) BS05 MG ? GO:0000049 ... Q5SHQ0 27681416
    89916 5czp:RG (3.29996) BS06 MG ? GO:0000049 ... Q5SHQ0 27681416
    89917 5czp:RN (3.29996) BS02 MG ? GO:0003729 ... P60488 27681416
    89918 5czp:RN (3.29996) BS03 MG ? GO:0003729 ... P60488 27681416
    89919 5czp:RP (3.29996) BS02 MG ? GO:0003735 ... Q5SHQ7 27681416
    89920 5czp:RP (3.29996) BS03 MG ? GO:0003735 ... Q5SHQ7 27681416
    89921 5czp:RP (3.29996) BS04 MG ? GO:0003735 ... Q5SHQ7 27681416
    89922 5czp:RQ (3.29996) BS03 MG ? GO:0000049 ... P60489 27681416
    89923 5czp:RQ (3.29996) BS04 MG ? GO:0000049 ... P60489 27681416
    89924 5czp:RQ (3.29996) BS05 MG ? GO:0000049 ... P60489 27681416
    89925 5czp:RQ (3.29996) BS06 MG ? GO:0000049 ... P60489 27681416
    89926 5czp:RQ (3.29996) BS07 MG ? GO:0000049 ... P60489 27681416
    89927 5czp:RR (3.29996) BS02 MG ? GO:0003735 ... Q9Z9H5 27681416
    89928 5czp:RR (3.29996) BS03 MG ? GO:0003735 ... Q9Z9H5 27681416
    89929 5czp:RR (3.29996) BS04 MG ? GO:0003735 ... Q9Z9H5 27681416
    89930 5czp:RU (3.29996) BS02 MG ? GO:0000027 ... P60491 27681416
    89931 5czp:RU (3.29996) BS03 MG ? GO:0000027 ... P60491 27681416
    89932 5czp:RU (3.29996) BS04 MG ? GO:0000027 ... P60491 27681416
    89933 5czp:RU (3.29996) BS05 MG ? GO:0000027 ... P60491 27681416
    89934 5czp:RU (3.29996) BS06 MG ? GO:0000027 ... P60491 27681416
    89935 5czp:RV (3.29996) BS02 MG ? GO:0003723 ... P60492 27681416
    89936 5czp:RV (3.29996) BS03 MG ? GO:0003723 ... P60492 27681416
    89937 5czp:RV (3.29996) BS04 MG ? GO:0003723 ... P60492 27681416
    89938 5czp:RW (3.29996) BS02 MG ? GO:0003735 ... Q5SHP3 27681416
    89939 5czp:RY (3.29996) BS02 ZN ? GO:0003723 ... Q5SHP9 27681416
    89940 5czp:XE (3.29996) BS02 MG ? GO:0003723 ... Q5SHQ5 27681416
    89941 5czp:XF (3.29996) BS02 MG ? GO:0003735 ... Q5SLP8 27681416
    89942 5czp:XJ (3.29996) BS02 MG ? GO:0000049 ... Q5SHN7 27681416
    89943 5czp:XN (3.29996) BS02 ZN N/A GO:0003735 ... N/A 27681416
    89944 5czp:XT (3.29996) BS02 MG ? GO:0003723 ... P80380 27681416
    89945 5czp:XY (3.29996) BS05 MG ? GO:0003747 ... P07012 27681416
    89946 5czp:XY (3.29996) BS06 MG ? GO:0003747 ... P07012 27681416
    89947 5czp:Y4 (3.29996) BS02 ZN ? GO:0003735 ... Q5SJE1 27681416
    89948 5czp:Y5 (3.29996) BS02 MG ? GO:0003735 ... P80339 27681416
    89949 5czp:Y5 (3.29996) BS03 MG ? GO:0003735 ... P80339 27681416
    89950 5czp:Y5 (3.29996) BS04 ZN ? GO:0003735 ... P80339 27681416
    89951 5czp:Y6 (3.29996) BS02 ZN ? GO:0000049 ... P35871 27681416
    89952 5czp:Y7 (3.29996) BS02 MG ? GO:0003735 ... P80340 27681416
    89953 5czp:Y9 (3.29996) BS02 ZN ? GO:0003735 ... Q5SHR2 27681416
    89954 5czp:YD (3.29996) BS03 MG ? GO:0002181 ... P60405 27681416
    89955 5czp:YD (3.29996) BS04 MG ? GO:0002181 ... P60405 27681416
    89956 5czp:YD (3.29996) BS05 MG ? GO:0002181 ... P60405 27681416
    89957 5czp:YD (3.29996) BS06 MG ? GO:0002181 ... P60405 27681416
    89958 5czp:YD (3.29996) BS07 MG ? GO:0002181 ... P60405 27681416
    89959 5czp:YD (3.29996) BS08 MG ? GO:0002181 ... P60405 27681416
    89960 5czp:YD (3.29996) BS09 MG ? GO:0002181 ... P60405 27681416
    89961 5czp:YD (3.29996) BS10 MG ? GO:0002181 ... P60405 27681416
    89962 5czp:YE (3.29996) BS02 MG ? GO:0003735 ... Q5SHN8 27681416
    89963 5czp:YE (3.29996) BS03 MG ? GO:0003735 ... Q5SHN8 27681416
    89964 5czp:YF (3.29996) BS02 MG ? GO:0003735 ... Q5SHN9 27681416
    89965 5czp:YF (3.29996) BS03 MG ? GO:0003735 ... Q5SHN9 27681416
    89966 5czp:YF (3.29996) BS04 MG ? GO:0003735 ... Q5SHN9 27681416
    89967 5czp:YF (3.29996) BS05 MG ? GO:0003735 ... Q5SHN9 27681416
    89968 5czp:YG (3.29996) BS04 MG ? GO:0000049 ... Q5SHQ0 27681416
    89969 5czp:YG (3.29996) BS05 MG ? GO:0000049 ... Q5SHQ0 27681416
    89970 5czp:YQ (3.29996) BS04 MG ? GO:0000049 ... P60489 27681416
    89971 5czp:YQ (3.29996) BS05 MG ? GO:0000049 ... P60489 27681416
    89972 5czp:YR (3.29996) BS02 MG ? GO:0003735 ... Q9Z9H5 27681416
    89973 5czp:YU (3.29996) BS02 MG ? GO:0000027 ... P60491 27681416
    89974 5czp:YV (3.29996) BS02 MG ? GO:0003723 ... P60492 27681416
    89975 5czp:YV (3.29996) BS03 MG ? GO:0003723 ... P60492 27681416
    89976 5czp:YW (3.29996) BS02 MG ? GO:0003735 ... Q5SHP3 27681416
    89977 5czp:YW (3.29996) BS03 MG ? GO:0003735 ... Q5SHP3 27681416
    89978 5czp:YY (3.29996) BS02 ZN ? GO:0003723 ... Q5SHP9 27681416
    89979 5czr:A (2.3) BS01 CA ? GO:0005509 ... Q9BYE9 N/A
    89980 5czr:A (2.3) BS02 CA ? GO:0005509 ... Q9BYE9 N/A
    89981 5czr:A (2.3) BS03 CA ? GO:0005509 ... Q9BYE9 N/A
    89982 5czr:A (2.3) BS04 CA ? GO:0005509 ... Q9BYE9 N/A
    89983 5czr:B (2.3) BS01 CA ? GO:0005509 ... Q9BYE9 N/A
    89984 5czr:B (2.3) BS02 CA ? GO:0005509 ... Q9BYE9 N/A
    89985 5czr:B (2.3) BS03 CA ? GO:0005509 ... Q9BYE9 N/A
    89986 5czr:B (2.3) BS04 CA ? GO:0005509 ... Q9BYE9 N/A
    89987 5czr:C (2.3) BS01 CA ? GO:0005509 ... Q9BYE9 N/A
    89988 5czr:C (2.3) BS02 CA ? GO:0005509 ... Q9BYE9 N/A
    89989 5czr:C (2.3) BS03 CA ? GO:0005509 ... Q9BYE9 N/A
    89990 5czr:C (2.3) BS04 CA ? GO:0005509 ... Q9BYE9 N/A
    89991 5czr:D (2.3) BS01 CA ? GO:0005509 ... Q9BYE9 N/A
    89992 5czr:D (2.3) BS02 CA ? GO:0005509 ... Q9BYE9 N/A
    89993 5czr:D (2.3) BS03 CA ? GO:0005509 ... Q9BYE9 N/A
    89994 5czr:D (2.3) BS04 CA ? GO:0005509 ... Q9BYE9 N/A
    89995 5czs:A (2.42) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    89996 5czs:B (2.42) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    89997 5czs:C (2.42) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    89998 5czs:D (2.42) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    89999 5czt:A (2.04) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    90000 5czt:B (2.04) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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