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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    89401 5cjw:B (3.4) BS05 MG 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 26318610
    89402 5cjz:A (1.803) BS01 CA ? GO:0016020 ... Q89ZX5 N/A
    89403 5ck1:A (1.835) BS01 CA ? GO:0016020 ... Q89ZX5 N/A
    89404 5ck3:B (3.2) BS01 MG ? N/A G0S401 26299945
    89405 5ck3:D (3.2) BS01 MG ? N/A G0S401 26299945
    89406 5ck3:F (3.2) BS01 MG ? N/A G0S401 26299945
    89407 5ckm:A (2.73) BS01 CA 3.4.21.104 GO:0005509 ... Q9JJS8 28111019
    89408 5ckm:A (2.73) BS02 CA 3.4.21.104 GO:0005509 ... Q9JJS8 28111019
    89409 5ckm:A (2.73) BS03 CA 3.4.21.104 GO:0005509 ... Q9JJS8 28111019
    89410 5ckn:A (2.6) BS01 CA 3.4.21.104 GO:0005509 ... Q9JJS8 28111019
    89411 5ckn:A (2.6) BS02 CA 3.4.21.104 GO:0005509 ... Q9JJS8 28111019
    89412 5ckn:A (2.6) BS03 CA 3.4.21.104 GO:0005509 ... Q9JJS8 28111019
    89413 5ckn:D (2.6) BS01 CA 3.4.21.104 GO:0005509 ... Q9JJS8 28111019
    89414 5ckn:D (2.6) BS02 CA 3.4.21.104 GO:0005509 ... Q9JJS8 28111019
    89415 5ckn:D (2.6) BS03 CA 3.4.21.104 GO:0005509 ... Q9JJS8 28111019
    89416 5ckq:A (3.704) BS01 CA 3.4.21.- GO:0005509 ... Q8CHN8 28111019
    89417 5ckq:A (3.704) BS02 CA 3.4.21.- GO:0005509 ... Q8CHN8 28111019
    89418 5ckq:A (3.704) BS03 CA 3.4.21.- GO:0005509 ... Q8CHN8 28111019
    89419 5ckv:A (2.787) BS02 MN 2.5.1.54 GO:0003849 ... O53512 26776476
    89420 5ckv:B (2.787) BS02 MN 2.5.1.54 GO:0003849 ... O53512 26776476
    89421 5ckw:B (2.49) BS02 MG 2.7.11.1 GO:0004672 ... Q5WZW9 26419332
    89422 5ckx:A (2.7) BS01 MN 2.5.1.54 GO:0003849 ... O53512 26776476
    89423 5ckx:B (2.7) BS02 MN 2.5.1.54 GO:0003849 ... O53512 26776476
    89424 5cl0:A (2.22) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    89425 5cl0:A (2.22) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    89426 5cll:A (2.45) BS03 MG 3.6.5.- GO:0003924 ... P62826 26272610
    89427 5cll:C (2.45) BS03 MG 3.6.5.- GO:0003924 ... P62826 26272610
    89428 5clq:A (3.2) BS02 MG 3.6.5.- GO:0000054 ... P62826 26272610
    89429 5clq:C (3.2) BS02 MG 3.6.5.- GO:0000054 ... P62826 26272610
    89430 5cls:A (1.75) BS01 CO 3.4.11.18 GO:0006508 ... P50579 26686773
    89431 5clu:A (1.55) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26507456
    89432 5cm2:M (2.5) BS01 ZN ? GO:0000470 ... Q6C4P5 26438534
    89433 5cm7:A (1.55) BS03 CA 2.7.4.16 GO:0000287 ... A0A0D5YC82 30867460
    89434 5cm7:A (1.55) BS04 MG 2.7.4.16 GO:0000287 ... A0A0D5YC82 30867460
    89435 5cm7:B (1.55) BS02 CA 2.7.4.16 GO:0000287 ... A0A0D5YC82 30867460
    89436 5cm7:B (1.55) BS03 MG 2.7.4.16 GO:0000287 ... A0A0D5YC82 30867460
    89437 5cmb:A (1.34) BS02 MG ? GO:0015276 ... A0A0R4I973 27791085
    89438 5cmb:B (1.34) BS01 MG ? GO:0015276 ... A0A0R4I973 27791085
    89439 5cmc:A (1.28) BS02 MG ? GO:0015276 ... A0A0R4I973 27791085
    89440 5cmc:B (1.28) BS02 MG ? GO:0015276 ... A0A0R4I973 27791085
    89441 5cmn:E (3.605) BS01 CA ? N/A Q9HAR2 26235030
    89442 5cmn:F (3.605) BS01 CA ? N/A Q9HAR2 26235030
    89443 5cmn:G (3.605) BS01 CA ? N/A Q9HAR2 26235030
    89444 5cmn:H (3.605) BS01 CA ? N/A Q9HAR2 26235030
    89445 5cmq:A (1.935) BS01 ZN 1.16.3.1 GO:0004322 ... P02794 26305584
    89446 5cmq:A (1.935) BS02 ZN 1.16.3.1 GO:0004322 ... P02794 26305584
    89447 5cmr:A (3.792) BS01 ZN 1.16.3.1 GO:0004322 ... P02794 26305584
    89448 5cna:A (2.0) BS02 MN ? GO:0030246 ... P02866 15299352
    89449 5cna:A (2.0) BS03 CA ? GO:0030246 ... P02866 15299352
    89450 5cna:B (2.0) BS02 MN ? GO:0030246 ... P02866 15299352
    89451 5cna:B (2.0) BS03 CA ? GO:0030246 ... P02866 15299352
    89452 5cna:C (2.0) BS02 MN ? GO:0030246 ... P02866 15299352
    89453 5cna:C (2.0) BS03 CA ? GO:0030246 ... P02866 15299352
    89454 5cna:D (2.0) BS02 MN ? GO:0030246 ... P02866 15299352
    89455 5cna:D (2.0) BS03 CA ? GO:0030246 ... P02866 15299352
    89456 5cnm:A (2.84) BS02 MG ? GO:0004930 ... Q14832 26313429
    89457 5cnn:A (1.9) BS02 MG 2.7.10.1 GO:0004672 ... P00533 26124280
    89458 5cnn:B (1.9) BS02 MG 2.7.10.1 GO:0004672 ... P00533 26124280
    89459 5cno:A (1.55) BS03 MG 2.7.10.1 GO:0004672 ... P00533 26124280
    89460 5cno:B (1.55) BS03 MG 2.7.10.1 GO:0004672 ... P00533 26124280
    89461 5cnp:B (2.38) BS01 MG 2.3.1.57 GO:0000287 ... Q9KL03 26410587
    89462 5cnp:D (2.38) BS01 MG 2.3.1.57 GO:0000287 ... Q9KL03 26410587
    89463 5cnp:F (2.38) BS01 MG 2.3.1.57 GO:0000287 ... Q9KL03 26410587
    89464 5cnq:A (2.602) BS03 MN ? GO:0004518 ... G0RYN2 26686639
    89465 5cnx:A (2.6) BS01 ZN 3.4.11.- GO:0004177 ... P76524 30536999
    89466 5cnx:A (2.6) BS02 ZN 3.4.11.- GO:0004177 ... P76524 30536999
    89467 5cnx:B (2.6) BS01 ZN 3.4.11.- GO:0004177 ... P76524 30536999
    89468 5cnx:B (2.6) BS02 ZN 3.4.11.- GO:0004177 ... P76524 30536999
    89469 5cnx:C (2.6) BS01 ZN 3.4.11.- GO:0004177 ... P76524 30536999
    89470 5cnx:C (2.6) BS02 ZN 3.4.11.- GO:0004177 ... P76524 30536999
    89471 5co1:A (2.51) BS01 CA ? GO:0005509 ... F8W3X3 27787195
    89472 5co1:A (2.51) BS02 CA ? GO:0005509 ... F8W3X3 27787195
    89473 5co1:A (2.51) BS03 CA ? GO:0005509 ... F8W3X3 27787195
    89474 5co1:A (2.51) BS04 CA ? GO:0005509 ... F8W3X3 27787195
    89475 5co1:B (2.51) BS01 CA ? GO:0005509 ... F8W3X3 27787195
    89476 5co1:B (2.51) BS02 CA ? GO:0005509 ... F8W3X3 27787195
    89477 5co1:B (2.51) BS03 CA ? GO:0005509 ... F8W3X3 27787195
    89478 5co1:B (2.51) BS04 CA ? GO:0005509 ... F8W3X3 27787195
    89479 5co1:C (2.51) BS01 CA ? GO:0005509 ... F8W3X3 27787195
    89480 5co1:C (2.51) BS02 CA ? GO:0005509 ... F8W3X3 27787195
    89481 5co1:C (2.51) BS03 CA ? GO:0005509 ... F8W3X3 27787195
    89482 5co1:C (2.51) BS04 CA ? GO:0005509 ... F8W3X3 27787195
    89483 5co1:D (2.51) BS01 CA ? GO:0005509 ... F8W3X3 27787195
    89484 5co1:D (2.51) BS02 CA ? GO:0005509 ... F8W3X3 27787195
    89485 5co1:D (2.51) BS03 CA ? GO:0005509 ... F8W3X3 27787195
    89486 5co1:D (2.51) BS04 CA ? GO:0005509 ... F8W3X3 27787195
    89487 5co8:A (2.4) BS04 MG ? GO:0004518 ... G0RYN2 26686639
    89488 5co8:C (2.4) BS03 MG ? GO:0004518 ... G0RYN2 26686639
    89489 5coc:A (2.6691) BS01 CA ? GO:0005509 ... P0DP23
    P38507    		 26980593
    89490 5coc:A (2.6691) BS02 CA ? GO:0005509 ... P0DP23
    P38507    		 26980593
    89491 5cof:A (1.35) BS01 CA ? GO:0046872 ... Q1R1X2 26804569
    89492 5cof:A (1.35) BS02 CA ? GO:0046872 ... Q1R1X2 26804569
    89493 5coj:A (1.9) BS03 MG 2.7.1.50 GO:0000287 ... Q6GEY3 26960569
    89494 5coj:B (1.9) BS01 MG 2.7.1.50 GO:0000287 ... Q6GEY3 26960569
    89495 5coj:C (1.9) BS03 MG 2.7.1.50 GO:0000287 ... Q6GEY3 26960569
    89496 5coj:E (1.9) BS02 MG 2.7.1.50 GO:0000287 ... Q6GEY3 26960569
    89497 5cp3:A (1.99) BS02 CA N/A N/A N/A 30580515
    89498 5cpa:A (1.54) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 6887246
    89499 5cpl:B (1.57) BS02 CA ? GO:0000166 ... Q9R9V9 26727612
    89500 5cpo:B (1.65) BS03 CA ? GO:0000166 ... Q9R9V9 26727612
    89501 5cpr:B (2.22) BS01 ZN 2.1.1.361
    2.1.1.362    		 GO:0042799 ... Q4FZB7 28114273
    89502 5cpv:A (1.6) BS01 CA ? GO:0005509 ... P02618 2777802
    89503 5cpv:A (1.6) BS02 CA ? GO:0005509 ... P02618 2777802
    89504 5cqd:A (2.08) BS01 ZN 3.5.4.38 GO:0003824 ... Q9UH17 26416889
    89505 5cqd:C (2.08) BS01 ZN 3.5.4.38 GO:0003824 ... Q9UH17 26416889
    89506 5cqh:A (1.73) BS01 ZN 3.5.4.38 GO:0003824 ... Q9UH17 26416889
    89507 5cqi:A (1.68) BS01 ZN 3.5.4.38 GO:0003824 ... Q9UH17 26416889
    89508 5cqk:A (1.88) BS01 ZN 3.5.4.38 GO:0003824 ... Q9UH17 26416889
    89509 5cqz:A (2.9) BS01 MG 2.7.1.77
    3.1.3.5
    3.1.3.99    		 GO:0000255 ... P49902 26599519
    89510 5cqz:B (2.9) BS02 MG 2.7.1.77
    3.1.3.5
    3.1.3.99    		 GO:0000255 ... P49902 26599519
    89511 5cr0:B (2.75) BS01 MG 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 26836966
    89512 5cr3:A (1.8) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    89513 5cr7:A (2.9) BS02 MG 2.7.1.77
    3.1.3.5
    3.1.3.99    		 GO:0000255 ... P49902 26599519
    89514 5cr7:B (2.9) BS02 MG 2.7.1.77
    3.1.3.5
    3.1.3.99    		 GO:0000255 ... P49902 26599519
    89515 5crd:A (2.08) BS01 CA ? GO:0005509 ... P31415 26416891
    89516 5crd:A (2.08) BS02 CA ? GO:0005509 ... P31415 26416891
    89517 5crd:A (2.08) BS03 CA ? GO:0005509 ... P31415 26416891
    89518 5cre:A (3.315) BS01 CA ? GO:0005509 ... P31415 26416891
    89519 5cre:A (3.315) BS02 CA ? GO:0005509 ... P31415 26416891
    89520 5crg:A (1.97) BS01 CA ? GO:0005509 ... P31415 26416891
    89521 5crg:A (1.97) BS02 CA ? GO:0005509 ... P31415 26416891
    89522 5crg:A (1.97) BS03 CA ? GO:0005509 ... P31415 26416891
    89523 5crg:A (1.97) BS04 CA ? GO:0005509 ... P31415 26416891
    89524 5crg:A (1.97) BS05 CA ? GO:0005509 ... P31415 26416891
    89525 5crg:A (1.97) BS06 CA ? GO:0005509 ... P31415 26416891
    89526 5crg:A (1.97) BS07 CA ? GO:0005509 ... P31415 26416891
    89527 5crg:A (1.97) BS08 CA ? GO:0005509 ... P31415 26416891
    89528 5crg:A (1.97) BS09 CA ? GO:0005509 ... P31415 26416891
    89529 5crg:A (1.97) BS10 CA ? GO:0005509 ... P31415 26416891
    89530 5crg:A (1.97) BS11 CA ? GO:0005509 ... P31415 26416891
    89531 5crg:A (1.97) BS12 CA ? GO:0005509 ... P31415 26416891
    89532 5crg:A (1.97) BS13 CA ? GO:0005509 ... P31415 26416891
    89533 5crg:B (1.97) BS01 CA ? GO:0005509 ... P31415 26416891
    89534 5crg:B (1.97) BS02 CA ? GO:0005509 ... P31415 26416891
    89535 5crg:B (1.97) BS03 CA ? GO:0005509 ... P31415 26416891
    89536 5crg:B (1.97) BS04 CA ? GO:0005509 ... P31415 26416891
    89537 5crg:B (1.97) BS05 CA ? GO:0005509 ... P31415 26416891
    89538 5crg:B (1.97) BS06 CA ? GO:0005509 ... P31415 26416891
    89539 5crg:B (1.97) BS07 CA ? GO:0005509 ... P31415 26416891
    89540 5crg:B (1.97) BS08 CA ? GO:0005509 ... P31415 26416891
    89541 5crg:B (1.97) BS09 CA ? GO:0005509 ... P31415 26416891
    89542 5crg:B (1.97) BS10 CA ? GO:0005509 ... P31415 26416891
    89543 5crg:B (1.97) BS11 CA ? GO:0005509 ... P31415 26416891
    89544 5crg:B (1.97) BS12 CA ? GO:0005509 ... P31415 26416891
    89545 5crg:B (1.97) BS13 CA ? GO:0005509 ... P31415 26416891
    89546 5crg:B (1.97) BS14 CA ? GO:0005509 ... P31415 26416891
    89547 5crg:C (1.97) BS01 CA ? GO:0005509 ... P31415 26416891
    89548 5crg:C (1.97) BS02 CA ? GO:0005509 ... P31415 26416891
    89549 5crg:C (1.97) BS03 CA ? GO:0005509 ... P31415 26416891
    89550 5crg:C (1.97) BS04 CA ? GO:0005509 ... P31415 26416891
    89551 5crg:C (1.97) BS05 CA ? GO:0005509 ... P31415 26416891
    89552 5crg:C (1.97) BS06 CA ? GO:0005509 ... P31415 26416891
    89553 5crg:C (1.97) BS07 CA ? GO:0005509 ... P31415 26416891
    89554 5crg:C (1.97) BS08 CA ? GO:0005509 ... P31415 26416891
    89555 5crg:C (1.97) BS09 CA ? GO:0005509 ... P31415 26416891
    89556 5crg:C (1.97) BS10 CA ? GO:0005509 ... P31415 26416891
    89557 5crg:C (1.97) BS11 CA ? GO:0005509 ... P31415 26416891
    89558 5crg:C (1.97) BS12 CA ? GO:0005509 ... P31415 26416891
    89559 5crg:C (1.97) BS13 CA ? GO:0005509 ... P31415 26416891
    89560 5crg:D (1.97) BS01 CA ? GO:0005509 ... P31415 26416891
    89561 5crg:D (1.97) BS02 CA ? GO:0005509 ... P31415 26416891
    89562 5crg:D (1.97) BS03 CA ? GO:0005509 ... P31415 26416891
    89563 5crg:D (1.97) BS04 CA ? GO:0005509 ... P31415 26416891
    89564 5crg:D (1.97) BS05 CA ? GO:0005509 ... P31415 26416891
    89565 5crg:D (1.97) BS06 CA ? GO:0005509 ... P31415 26416891
    89566 5crg:D (1.97) BS07 CA ? GO:0005509 ... P31415 26416891
    89567 5crg:D (1.97) BS08 CA ? GO:0005509 ... P31415 26416891
    89568 5crg:D (1.97) BS09 CA ? GO:0005509 ... P31415 26416891
    89569 5crg:D (1.97) BS10 CA ? GO:0005509 ... P31415 26416891
    89570 5crg:D (1.97) BS11 CA ? GO:0005509 ... P31415 26416891
    89571 5crg:D (1.97) BS12 CA ? GO:0005509 ... P31415 26416891
    89572 5crg:D (1.97) BS13 CA ? GO:0005509 ... P31415 26416891
    89573 5crg:D (1.97) BS14 CA ? GO:0005509 ... P31415 26416891
    89574 5crh:A (2.03) BS01 CA ? GO:0005509 ... P31415 26416891
    89575 5crh:A (2.03) BS02 CA ? GO:0005509 ... P31415 26416891
    89576 5crh:A (2.03) BS03 CA ? GO:0005509 ... P31415 26416891
    89577 5crh:A (2.03) BS04 CA ? GO:0005509 ... P31415 26416891
    89578 5crh:A (2.03) BS05 CA ? GO:0005509 ... P31415 26416891
    89579 5crh:A (2.03) BS06 CA ? GO:0005509 ... P31415 26416891
    89580 5crh:A (2.03) BS07 CA ? GO:0005509 ... P31415 26416891
    89581 5crh:A (2.03) BS08 CA ? GO:0005509 ... P31415 26416891
    89582 5crh:B (2.03) BS01 CA ? GO:0005509 ... P31415 26416891
    89583 5crh:B (2.03) BS02 CA ? GO:0005509 ... P31415 26416891
    89584 5crh:B (2.03) BS03 CA ? GO:0005509 ... P31415 26416891
    89585 5crh:B (2.03) BS04 CA ? GO:0005509 ... P31415 26416891
    89586 5crh:B (2.03) BS05 CA ? GO:0005509 ... P31415 26416891
    89587 5crh:B (2.03) BS06 CA ? GO:0005509 ... P31415 26416891
    89588 5crh:B (2.03) BS07 CA ? GO:0005509 ... P31415 26416891
    89589 5crh:B (2.03) BS08 CA ? GO:0005509 ... P31415 26416891
    89590 5crl:B (2.8) BS01 HG ? GO:0003677 ... P0A183 27641146
    89591 5cry:A (2.79) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    89592 5cry:B (2.79) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    89593 5csf:A (2.4) BS02 CA ? GO:0001726 ... P04271 26527685
    89594 5csf:A (2.4) BS03 CA ? GO:0001726 ... P04271 26527685
    89595 5csf:B (2.4) BS02 CA ? GO:0001726 ... P04271 26527685
    89596 5csf:B (2.4) BS03 CA ? GO:0001726 ... P04271 26527685
    89597 5csi:A (2.13) BS02 CA ? GO:0001726 ... P04271 26527685
    89598 5csi:A (2.13) BS03 CA ? GO:0001726 ... P04271 26527685
    89599 5csi:B (2.13) BS02 CA ? GO:0001726 ... P04271 26527685
    89600 5csi:B (2.13) BS03 CA ? GO:0001726 ... P04271 26527685
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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