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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    89201 5cdn:U (2.79) BS03 MN 5.6.2.2 GO:0003677 ... P66937 26640131
    89202 5cdo:B (3.15) BS03 MN 5.6.2.2 GO:0003677 ... P66937 26640131
    89203 5cdo:D (3.15) BS03 MN 5.6.2.2 GO:0003677 ... P66937 26640131
    89204 5cdo:S (3.15) BS03 MN 5.6.2.2 GO:0003677 ... P66937 26640131
    89205 5cdo:U (3.15) BS03 MN 5.6.2.2 GO:0003677 ... P66937 26640131
    89206 5cdp:B (2.45) BS04 MN 5.6.2.2 GO:0003677 ... P66937 26640131
    89207 5cdp:D (2.45) BS04 MN 5.6.2.2 GO:0003677 ... P66937 26640131
    89208 5cdq:A (2.95) BS03 MG 5.6.2.2 GO:0003677 ... Q99XG5 26640131
    89209 5cdq:B (2.95) BS03 MG 5.6.2.2 GO:0003677 ... P66937 26640131
    89210 5cdq:C (2.95) BS03 MG 5.6.2.2 GO:0003677 ... Q99XG5 26640131
    89211 5cdq:D (2.95) BS03 MG 5.6.2.2 GO:0003677 ... P66937 26640131
    89212 5cdq:S (2.95) BS03 MG 5.6.2.2 GO:0003677 ... P66937 26640131
    89213 5cdq:T (2.95) BS03 MG 5.6.2.2 GO:0003677 ... Q99XG5 26640131
    89214 5cdq:U (2.95) BS03 MG 5.6.2.2 GO:0003677 ... P66937 26640131
    89215 5cdr:A (2.65) BS03 MN 5.6.2.2 GO:0003677 ... Q99XG5 26640131
    89216 5cdr:B (2.65) BS03 MN 5.6.2.2 GO:0003677 ... P66937 26640131
    89217 5cdr:D (2.65) BS03 MN 5.6.2.2 GO:0003677 ... P66937 26640131
    89218 5cds:A (1.4) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    89219 5cds:A (1.4) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    89220 5cds:B (1.4) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    89221 5cds:B (1.4) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    89222 5cdt:A (1.7) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    89223 5cdt:A (1.7) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    89224 5cdt:B (1.7) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    89225 5cdt:B (1.7) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    89226 5cdu:A (1.6) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    89227 5cdu:A (1.6) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    89228 5cdu:B (1.6) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    89229 5cdu:B (1.6) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    89230 5cdv:A (1.45) BS01 MN ? GO:0004177 ... Q9RUY4 N/A
    89231 5ce3:B (2.93) BS02 MG 2.7.11.1 GO:0004672 ... Q93KQ6 N/A
    89232 5ce3:D (2.93) BS02 MG 2.7.11.1 GO:0004672 ... Q93KQ6 N/A
    89233 5ce5:A (2.0) BS01 CA 3.1.1.3 GO:0004806 ... Q59260 26573720
    89234 5ce5:A (2.0) BS02 ZN 3.1.1.3 GO:0004806 ... Q59260 26573720
    89235 5ce9:A (1.8) BS01 CU ? GO:0004097 ... C0LU17 26473311
    89236 5ce9:A (1.8) BS02 CU ? GO:0004097 ... C0LU17 26473311
    89237 5ce9:B (1.8) BS01 CU ? GO:0004097 ... C0LU17 26473311
    89238 5ce9:B (1.8) BS02 CU ? GO:0004097 ... C0LU17 26473311
    89239 5cee:A (2.498) BS02 MG 1.1.1.38 GO:0000166 ... Q2NK75 29652260
    89240 5ceh:A (3.14) BS01 ZN 1.14.11.67 GO:0003677 ... P29375 27214401
    89241 5ceh:A (3.14) BS02 ZN 1.14.11.67 GO:0003677 ... P29375 27214401
    89242 5cel:A (1.9) BS09 CO 3.2.1.91 GO:0004553 ... P62694 9466911
    89243 5cel:A (1.9) BS10 CO 3.2.1.91 GO:0004553 ... P62694 9466911
    89244 5cet:A (2.0) BS01 MN 3.1.-.-
    3.1.3.7
    GO:0003676 ... P71615 26668313
    89245 5cet:A (2.0) BS02 MN 3.1.-.-
    3.1.3.7
    GO:0003676 ... P71615 26668313
    89246 5cev:A (2.5) BS01 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    89247 5cev:A (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    89248 5cev:B (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    89249 5cev:B (2.5) BS03 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    89250 5cev:C (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    89251 5cev:C (2.5) BS03 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    89252 5cev:D (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    89253 5cev:D (2.5) BS03 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    89254 5cev:E (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    89255 5cev:E (2.5) BS03 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    89256 5cev:F (2.5) BS04 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    89257 5cev:F (2.5) BS05 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    89258 5cew:A (2.03) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    89259 5cf3:A (2.031) BS01 CA ? GO:0005618 ... Q14U76 26349459
    89260 5cf3:A (2.031) BS02 CA ? GO:0005618 ... Q14U76 26349459
    89261 5cfa:A (1.45) BS02 MG ? GO:0005618 ... Q14U76 26349459
    89262 5cfe:A (1.84) BS01 CA 3.1.11.2 GO:0003677 ... P37454 27343627
    89263 5cfg:A (1.8) BS01 MG 3.1.11.2
    3.1.21.-
    GO:0003677 ... P27695 27343627
    89264 5cfr:A (2.85) BS01 CA ? GO:0002218 ... A7SLZ2 26300263
    89265 5cfr:B (2.85) BS01 CA ? GO:0002218 ... A7SLZ2 26300263
    89266 5cfs:A (1.7) BS01 MN ? N/A Q6X3H6 26900880
    89267 5cfs:A (1.7) BS02 MN ? N/A Q6X3H6 26900880
    89268 5cft:A (1.5) BS01 MN ? N/A Q6X3H6 26900880
    89269 5cft:A (1.5) BS02 MN ? N/A Q6X3H6 26900880
    89270 5cfu:A (1.82) BS01 MN ? N/A Q6X3H6 32100995
    89271 5cfy:A (3.5) BS02 NA ? GO:0005283 ... O59010 24842876
    89272 5cfy:A (3.5) BS03 NA ? GO:0005283 ... O59010 24842876
    89273 5cfy:B (3.5) BS02 NA ? GO:0005283 ... O59010 24842876
    89274 5cfy:B (3.5) BS03 NA ? GO:0005283 ... O59010 24842876
    89275 5cfy:C (3.5) BS02 NA ? GO:0005283 ... O59010 24842876
    89276 5cfy:C (3.5) BS03 NA ? GO:0005283 ... O59010 24842876
    89277 5cfy:D (3.5) BS02 NA ? GO:0005283 ... O59010 24842876
    89278 5cfy:D (3.5) BS03 NA ? GO:0005283 ... O59010 24842876
    89279 5cfy:E (3.5) BS02 NA ? GO:0005283 ... O59010 24842876
    89280 5cfy:E (3.5) BS03 NA ? GO:0005283 ... O59010 24842876
    89281 5cfy:F (3.5) BS02 NA ? GO:0005283 ... O59010 24842876
    89282 5cfy:F (3.5) BS03 NA ? GO:0005283 ... O59010 24842876
    89283 5cg5:A (1.402) BS01 MG 2.5.1.1
    2.5.1.10
    N/A P14324 26314394
    89284 5cg5:A (1.402) BS02 MG 2.5.1.1
    2.5.1.10
    N/A P14324 26314394
    89285 5cg6:A (1.7) BS01 MG 2.5.1.1
    2.5.1.10
    N/A P14324 26314394
    89286 5cg6:A (1.7) BS02 MG 2.5.1.1
    2.5.1.10
    N/A P14324 26314394
    89287 5cg8:A (2.702) BS04 MN 1.14.11.80 N/A D2W6T1 26323320
    89288 5cg9:A (2.693) BS04 MN 1.14.11.80 N/A D2W6T1 26323320
    89289 5cg9:D (2.693) BS04 MN 1.14.11.80 N/A D2W6T1 26323320
    89290 5cga:A (1.87) BS02 MG 2.7.1.50 GO:0000287 ... Q6GEY3 26960569
    89291 5cga:B (1.87) BS03 MG 2.7.1.50 GO:0000287 ... Q6GEY3 26960569
    89292 5cga:C (1.87) BS03 MG 2.7.1.50 GO:0000287 ... Q6GEY3 26960569
    89293 5cga:E (1.87) BS02 MG 2.7.1.50 GO:0000287 ... Q6GEY3 26960569
    89294 5cge:C (1.62) BS03 MG 2.7.1.50 GO:0000287 ... Q6GEY3 26960569
    89295 5cge:C (1.62) BS04 MG 2.7.1.50 GO:0000287 ... Q6GEY3 26960569
    89296 5cge:E (1.62) BS02 MG 2.7.1.50 GO:0000287 ... Q6GEY3 26960569
    89297 5cgf:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26563572
    89298 5cgf:I (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26563572
    89299 5cgf:K (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26563572
    89300 5cgf:N (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P38624 26563572
    89301 5cgf:V (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26563572
    89302 5cgf:W (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26563572
    89303 5cgf:Y (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26563572
    89304 5cgf:Z (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26563572
    89305 5cgg:G (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26563572
    89306 5cgg:I (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26563572
    89307 5cgg:K (2.9) BS03 MG 3.4.25.1 GO:0004298 ... P30656 26563572
    89308 5cgg:N (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P38624 26563572
    89309 5cgg:V (2.9) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26563572
    89310 5cgg:Y (2.9) BS02 MG 3.4.25.1 GO:0004298 ... P30656 26563572
    89311 5cgg:Y (2.9) BS03 MG 3.4.25.1 GO:0004298 ... P30656 26563572
    89312 5cgg:Z (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26563572
    89313 5cgh:G (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26563572
    89314 5cgh:I (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26563572
    89315 5cgh:K (2.5) BS03 MG 3.4.25.1 GO:0004298 ... P30656 26563572
    89316 5cgh:N (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P38624 26563572
    89317 5cgh:V (2.5) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26563572
    89318 5cgh:Y (2.5) BS02 MG 3.4.25.1 GO:0004298 ... P30656 26563572
    89319 5cgh:Y (2.5) BS03 MG 3.4.25.1 GO:0004298 ... P30656 26563572
    89320 5cgh:Z (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26563572
    89321 5cgi:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26563572
    89322 5cgi:I (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26563572
    89323 5cgi:K (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26563572
    89324 5cgi:N (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P38624 26563572
    89325 5cgi:V (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26563572
    89326 5cgi:Y (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26563572
    89327 5cgi:Z (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26563572
    89328 5cgk:A (1.85) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    89329 5cgs:A (1.634) BS01 ZN 3.5.2.6 GO:0008800 ... Q9L387 26525784
    89330 5cgt:A (2.5) BS06 CA 2.4.1.19 GO:0003824 ... P30920 9738912
    89331 5cgt:A (2.5) BS07 CA 2.4.1.19 GO:0003824 ... P30920 9738912
    89332 5cgv:A (2.17) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    89333 5cgv:A (2.17) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    89334 5cgw:A (1.4) BS01 ZN 3.5.2.6 GO:0008800 ... Q9L387 26525784
    89335 5cgw:A (1.4) BS02 ZN 3.5.2.6 GO:0008800 ... Q9L387 26525784
    89336 5cgw:A (1.4) BS03 ZN 3.5.2.6 GO:0008800 ... Q9L387 26525784
    89337 5cgx:A (1.21) BS02 ZN 3.5.2.6 GO:0008800 ... Q9L387 26525784
    89338 5cgx:A (1.21) BS03 ZN 3.5.2.6 GO:0008800 ... Q9L387 26525784
    89339 5cgx:A (1.21) BS04 ZN 3.5.2.6 GO:0008800 ... Q9L387 26525784
    89340 5cgz:A (2.103) BS01 ZN 4.2.1.83 GO:0009056 ... Q88JX8 26867578
    89341 5cgz:B (2.103) BS01 ZN 4.2.1.83 GO:0009056 ... Q88JX8 26867578
    89342 5ch7:A (2.2) BS05 ZN ? GO:0009061 ... G8QM55 26940877
    89343 5ch7:C (2.2) BS06 ZN ? GO:0009061 ... G8QM55 26940877
    89344 5ch7:E (2.2) BS05 ZN ? GO:0009061 ... G8QM55 26940877
    89345 5ch8:A (1.62) BS01 ZN 3.1.1.- GO:0005576 ... P61869 N/A
    89346 5ch8:A (1.62) BS02 ZN 3.1.1.- GO:0005576 ... P61869 N/A
    89347 5ch9:A (1.9) BS01 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    89348 5ch9:A (1.9) BS02 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    89349 5ch9:B (1.9) BS01 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    89350 5ch9:B (1.9) BS02 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    89351 5chg:A (2.9) BS03 MG 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 26836966
    89352 5chg:B (2.9) BS01 MG 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 26836966
    89353 5chi:A (2.472) BS02 MG ? GO:0046872 ... Q8TZE9 N/A
    89354 5chi:A (2.472) BS03 MG ? GO:0046872 ... Q8TZE9 N/A
    89355 5chi:B (2.472) BS02 MG ? GO:0046872 ... Q8TZE9 N/A
    89356 5chi:B (2.472) BS03 MG ? GO:0046872 ... Q8TZE9 N/A
    89357 5chj:A (1.358) BS02 ZN 3.5.2.6 GO:0008800 ... Q9L387 32349291
    89358 5chj:A (1.358) BS03 ZN 3.5.2.6 GO:0008800 ... Q9L387 32349291
    89359 5chj:B (1.358) BS02 ZN 3.5.2.6 GO:0008800 ... Q9L387 32349291
    89360 5chj:B (1.358) BS03 ZN 3.5.2.6 GO:0008800 ... Q9L387 32349291
    89361 5chm:A (1.9) BS02 ZN 3.5.2.6 GO:0008800 ... Q9L387 32349291
    89362 5cht:A (2.8) BS01 ZN 3.4.19.12 GO:0004843 ... Q9WTV6 28165509
    89363 5cht:A (2.8) BS02 ZN 3.4.19.12 GO:0004843 ... Q9WTV6 28165509
    89364 5cht:B (2.8) BS01 ZN 3.4.19.12 GO:0004843 ... Q9WTV6 28165509
    89365 5cht:B (2.8) BS02 ZN 3.4.19.12 GO:0004843 ... Q9WTV6 28165509
    89366 5chu:B (1.1) BS01 ZN 3.5.2.6 GO:0008800 ... Q9L387 N/A
    89367 5chv:A (3.005) BS01 ZN 3.4.19.12 GO:0004843 ... Q9WTV6 28165509
    89368 5chv:B (3.005) BS01 ZN 3.4.19.12 GO:0004843 ... Q9WTV6 28165509
    89369 5chy:A (2.0) BS01 CA ? GO:0000156 ... P0AE67 9030562
    89370 5chz:A (1.83) BS04 MG 3.2.2.- GO:0003677 ... O95243 N/A
    89371 5cio:A (2.5) BS01 ZN ? GO:0004222 ... A0A1A9TAI5 27231346
    89372 5cio:B (2.5) BS01 ZN ? GO:0004222 ... A0A1A9TAI5 27231346
    89373 5cis:A (2.58) BS01 CA 3.4.21.104 GO:0005509 ... Q9JJS8 28111019
    89374 5cis:A (2.58) BS02 CA 3.4.21.104 GO:0005509 ... Q9JJS8 28111019
    89375 5cis:A (2.58) BS03 CA 3.4.21.104 GO:0005509 ... Q9JJS8 28111019
    89376 5cj7:B (2.901) BS01 MG 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 26836966
    89377 5cjf:A (1.83) BS01 ZN 4.2.1.1 GO:0004089 ... Q9ULX7 26497049
    89378 5cjm:A (2.13) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    89379 5cjn:A (2.19) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    89380 5cjn:A (2.19) BS02 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    89381 5cjo:A (3.287) BS02 ZN 3.4.24.56 GO:0001618 ... P14735 29273204
    89382 5cjp:A (2.6) BS02 MG 3.6.5.2 GO:0000139 ... P60953 27524202
    89383 5cjp:B (2.6) BS02 MG 3.6.5.2 GO:0000139 ... P60953 27524202
    89384 5cjp:C (2.6) BS02 MG 3.6.5.2 GO:0000139 ... P60953 27524202
    89385 5cjp:D (2.6) BS02 MG 3.6.5.2 GO:0000139 ... P60953 27524202
    89386 5cjt:A (3.4) BS04 MG 3.6.5.-
    5.4.99.13
    GO:0000287 ... Q1LRY0 26318610
    89387 5cjt:A (3.4) BS05 MG 3.6.5.-
    5.4.99.13
    GO:0000287 ... Q1LRY0 26318610
    89388 5cjt:B (3.4) BS04 MG 3.6.5.-
    5.4.99.13
    GO:0000287 ... Q1LRY0 26318610
    89389 5cjt:B (3.4) BS05 MG 3.6.5.-
    5.4.99.13
    GO:0000287 ... Q1LRY0 26318610
    89390 5cju:A (3.5) BS04 MG 3.6.5.-
    5.4.99.13
    GO:0000287 ... Q1LRY0 26318610
    89391 5cju:A (3.5) BS05 MG 3.6.5.-
    5.4.99.13
    GO:0000287 ... Q1LRY0 26318610
    89392 5cju:B (3.5) BS04 MG 3.6.5.-
    5.4.99.13
    GO:0000287 ... Q1LRY0 26318610
    89393 5cju:B (3.5) BS05 MG 3.6.5.-
    5.4.99.13
    GO:0000287 ... Q1LRY0 26318610
    89394 5cjv:A (3.45) BS04 MG 3.6.5.-
    5.4.99.13
    GO:0000287 ... Q1LRY0 26318610
    89395 5cjv:A (3.45) BS05 MG 3.6.5.-
    5.4.99.13
    GO:0000287 ... Q1LRY0 26318610
    89396 5cjv:B (3.45) BS03 MG 3.6.5.-
    5.4.99.13
    GO:0000287 ... Q1LRY0 26318610
    89397 5cjv:B (3.45) BS04 MG 3.6.5.-
    5.4.99.13
    GO:0000287 ... Q1LRY0 26318610
    89398 5cjw:A (3.4) BS04 MG 3.6.5.-
    5.4.99.13
    GO:0000287 ... Q1LRY0 26318610
    89399 5cjw:A (3.4) BS05 MG 3.6.5.-
    5.4.99.13
    GO:0000287 ... Q1LRY0 26318610
    89400 5cjw:B (3.4) BS04 MG 3.6.5.-
    5.4.99.13
    GO:0000287 ... Q1LRY0 26318610

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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