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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    88601 5bwn:A (1.942) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 27501476
    88602 5bwo:A (2.376) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 27501476
    88603 5bwz:A (1.59) BS01 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 31633931
    88604 5bwz:B (1.59) BS01 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 31633931
    88605 5bx2:A (1.61) BS02 CA 3.2.1.45 GO:0004348 ... F6BL85 27115290
    88606 5bx3:A (1.96) BS02 CA 3.2.1.45 GO:0004348 ... F6BL85 27115290
    88607 5bx4:A (1.65) BS02 CA 3.2.1.45 GO:0004348 ... F6BL85 27115290
    88608 5bx5:A (1.85) BS02 CA 3.2.1.45 GO:0004348 ... F6BL85 27115290
    88609 5bxc:A (1.4) BS02 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 26374898
    88610 5bxl:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 29654304
    88611 5bxl:H (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P25043 29654304
    88612 5bxl:I (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P25451 29654304
    88613 5bxl:K (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 29654304
    88614 5bxl:N (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P38624 29654304
    88615 5bxl:V (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P25043 29654304
    88616 5bxl:W (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P25451 29654304
    88617 5bxl:Y (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 29654304
    88618 5bxl:Z (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P23724 29654304
    88619 5bxn:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 29654304
    88620 5bxn:H (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P25043 29654304
    88621 5bxn:I (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P25451 29654304
    88622 5bxn:K (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 29654304
    88623 5bxn:N (2.8) BS02 MG 3.4.25.1 GO:0000502 ... P38624 29654304
    88624 5bxn:V (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P25043 29654304
    88625 5bxn:Y (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 29654304
    88626 5by0:A (1.8) BS01 MG 3.1.3.- GO:0005634 ... Q04371 N/A
    88627 5bya:A (1.9) BS03 MG 2.7.4.24 GO:0000829 ... O43314 26153667
    88628 5bya:A (1.9) BS04 MG 2.7.4.24 GO:0000829 ... O43314 26153667
    88629 5bya:A (1.9) BS05 MG 2.7.4.24 GO:0000829 ... O43314 26153667
    88630 5byb:A (2.3) BS03 MG 2.7.4.24 GO:0000829 ... O43314 26153667
    88631 5byb:A (2.3) BS04 MG 2.7.4.24 GO:0000829 ... O43314 26153667
    88632 5byb:A (2.3) BS05 MG 2.7.4.24 GO:0000829 ... O43314 26153667
    88633 5byg:B (2.5) BS03 MG ? N/A Q89268 26370092
    88634 5byi:A (1.15) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 26199669
    88635 5byl:A (2.15) BS01 MG 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    88636 5byl:B (2.15) BS01 MG 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    88637 5byl:C (2.15) BS01 MG 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    88638 5byl:D (2.15) BS01 MG 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    88639 5byn:A (2.651) BS01 CA ? GO:0005515 ... P81460 N/A
    88640 5byn:A (2.651) BS02 MN ? GO:0005515 ... P81460 N/A
    88641 5byn:B (2.651) BS03 CA ? GO:0005515 ... P81460 N/A
    88642 5byn:B (2.651) BS04 MN ? GO:0005515 ... P81460 N/A
    88643 5byq:A (1.73) BS07 MG 1.12.7.2 GO:0005506 ... P29166 29896366
    88644 5byq:B (1.73) BS07 MG 1.12.7.2 GO:0005506 ... P29166 29896366
    88645 5byr:A (1.82) BS07 MG 1.12.7.2 GO:0005506 ... P29166 29896366
    88646 5byr:A (1.82) BS08 MG 1.12.7.2 GO:0005506 ... P29166 29896366
    88647 5byr:B (1.82) BS07 MG 1.12.7.2 GO:0005506 ... P29166 29896366
    88648 5bys:A (1.93) BS07 MG 1.12.7.2 GO:0005506 ... P29166 29896366
    88649 5bys:B (1.93) BS07 MG 1.12.7.2 GO:0005506 ... P29166 29896366
    88650 5byt:A (2.0) BS01 MG 2.4.2.18 GO:0000162 ... P9WFX5 N/A
    88651 5byt:B (2.0) BS01 MG 2.4.2.18 GO:0000162 ... P9WFX5 N/A
    88652 5bz0:A (2.1) BS01 ZN 2.1.1.-
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0006508 ... P0C6Y1 N/A
    88653 5c0i:B (1.53) BS01 CA ? GO:0000139 ... P61769 27183389
    88654 5c0j:B (1.64) BS01 CA ? GO:0000139 ... P61769 27183389
    88655 5c0k:A (2.2) BS01 ZN 2.3.2.27 N/A P98170 26218264
    88656 5c0l:A (2.6) BS01 ZN 2.3.2.27 N/A P98170 26218264
    88657 5c0p:A (1.532) BS01 MG ? GO:0004553 ... Q8A6K8 N/A
    88658 5c0q:A (2.499) BS01 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    88659 5c0q:A (2.499) BS02 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    88660 5c0q:A (2.499) BS03 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    88661 5c0q:A (2.499) BS04 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    88662 5c0q:B (2.499) BS01 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    88663 5c0q:B (2.499) BS02 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    88664 5c0q:B (2.499) BS03 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    88665 5c0q:B (2.499) BS04 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    88666 5c0q:B (2.499) BS05 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    88667 5c0q:C (2.499) BS01 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    88668 5c0q:C (2.499) BS02 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    88669 5c0q:C (2.499) BS03 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    88670 5c0q:C (2.499) BS04 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    88671 5c0q:C (2.499) BS05 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    88672 5c0q:D (2.499) BS01 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    88673 5c0q:D (2.499) BS02 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    88674 5c0q:D (2.499) BS03 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    88675 5c0q:D (2.499) BS04 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    88676 5c0u:A (1.87) BS01 CU 4.99.1.2 GO:0016829 ... P77072 26820485
    88677 5c0u:B (1.87) BS01 CU 4.99.1.2 GO:0016829 ... P77072 26820485
    88678 5c0w:J (4.6) BS02 MG 3.1.13.-
    3.1.26.-
    GO:0000049 ... Q08162 26222026
    88679 5c0w:J (4.6) BS03 ZN 3.1.13.-
    3.1.26.-
    GO:0000049 ... Q08162 26222026
    88680 5c0x:J (3.812) BS02 ZN 3.1.13.-
    3.1.26.-
    GO:0000049 ... Q08162 26222026
    88681 5c0y:B (2.1) BS02 MG 3.1.13.- GO:0000166 ... Q12149 26222026
    88682 5c11:A (2.803) BS02 ZN 1.14.11.67 N/A P29375 N/A
    88683 5c11:A (2.803) BS03 ZN 1.14.11.67 N/A P29375 N/A
    88684 5c12:A (1.517) BS01 MG ? N/A Q716H3 26450964
    88685 5c12:A (1.517) BS02 MG ? N/A Q716H3 26450964
    88686 5c13:A (2.101) BS03 ZN ? N/A Q5VWG9 N/A
    88687 5c13:A (2.101) BS04 ZN ? N/A Q5VWG9 N/A
    88688 5c13:C (2.101) BS03 ZN ? N/A Q5VWG9 N/A
    88689 5c13:C (2.101) BS04 ZN ? N/A Q5VWG9 N/A
    88690 5c13:E (2.101) BS02 ZN ? N/A Q5VWG9 N/A
    88691 5c13:E (2.101) BS03 ZN ? N/A Q5VWG9 N/A
    88692 5c13:G (2.101) BS02 ZN ? N/A Q5VWG9 N/A
    88693 5c13:G (2.101) BS03 ZN ? N/A Q5VWG9 N/A
    88694 5c15:A (1.57) BS01 MN ? N/A Q716H3 26450964
    88695 5c15:A (1.57) BS02 MN ? N/A Q716H3 26450964
    88696 5c17:A (1.24) BS01 HG ? GO:0018836 ... Q7DJN2 26820485
    88697 5c18:A (3.3) BS03 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    88698 5c18:B (3.3) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    88699 5c18:C (3.3) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    88700 5c18:D (3.3) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    88701 5c18:E (3.3) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    88702 5c18:F (3.3) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    88703 5c1a:A (3.8) BS03 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    88704 5c1a:B (3.8) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    88705 5c1a:C (3.8) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    88706 5c1a:D (3.8) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    88707 5c1a:E (3.8) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    88708 5c1a:F (3.8) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    88709 5c1a:F (3.8) BS05 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    88710 5c1a:H (3.8) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    88711 5c1a:I (3.8) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    88712 5c1a:I (3.8) BS05 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    88713 5c1a:K (3.8) BS03 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    88714 5c1a:L (3.8) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    88715 5c1a:L (3.8) BS05 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    88716 5c1b:A (3.08) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712280
    88717 5c1b:B (3.08) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712280
    88718 5c1b:C (3.08) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712280
    88719 5c1b:D (3.08) BS05 MG 3.6.4.6 GO:0000502 ... P55072 26712280
    88720 5c1b:E (3.08) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712280
    88721 5c1b:F (3.08) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712280
    88722 5c1g:A (1.46) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 26374898
    88723 5c1h:A (1.55) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 26374898
    88724 5c1l:A (1.4) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 26374898
    88725 5c1o:B (2.5) BS02 MG 6.3.2.4 GO:0003824 ... Q8ZIE7 26894530
    88726 5c1o:C (2.5) BS02 MG 6.3.2.4 GO:0003824 ... Q8ZIE7 26894530
    88727 5c1o:D (2.5) BS02 MG 6.3.2.4 GO:0003824 ... Q8ZIE7 26894530
    88728 5c1r:A (1.802) BS01 MG 2.4.2.18 GO:0000162 ... P9WFX5 N/A
    88729 5c1r:A (1.802) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 N/A
    88730 5c1r:B (1.802) BS01 MG 2.4.2.18 GO:0000162 ... P9WFX5 N/A
    88731 5c1r:B (1.802) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 N/A
    88732 5c1v:A (3.35) BS01 FE 3.1.3.16 GO:0016787 ... Q08209 26248042
    88733 5c1v:A (3.35) BS02 ZN 3.1.3.16 GO:0016787 ... Q08209 26248042
    88734 5c1v:B (3.35) BS01 FE 3.1.3.16 GO:0016787 ... Q08209 26248042
    88735 5c1v:B (3.35) BS02 ZN 3.1.3.16 GO:0016787 ... Q08209 26248042
    88736 5c1w:A (1.7) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 26378882
    88737 5c1w:B (1.7) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 26378882
    88738 5c1z:A (1.79) BS01 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88739 5c1z:A (1.79) BS02 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88740 5c1z:A (1.79) BS03 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88741 5c1z:A (1.79) BS04 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88742 5c1z:A (1.79) BS05 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88743 5c1z:A (1.79) BS06 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88744 5c1z:A (1.79) BS07 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88745 5c1z:A (1.79) BS08 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88746 5c1z:B (1.79) BS01 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88747 5c1z:B (1.79) BS02 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88748 5c1z:B (1.79) BS03 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88749 5c1z:B (1.79) BS04 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88750 5c1z:B (1.79) BS05 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88751 5c1z:B (1.79) BS06 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88752 5c1z:B (1.79) BS07 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88753 5c1z:B (1.79) BS08 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88754 5c22:B (2.302) BS01 ZN ? GO:0015031 ... P09986 26833388
    88755 5c23:A (2.37) BS01 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88756 5c23:A (2.37) BS02 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88757 5c23:A (2.37) BS03 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88758 5c23:A (2.37) BS04 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88759 5c23:A (2.37) BS05 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88760 5c23:A (2.37) BS06 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88761 5c23:A (2.37) BS07 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88762 5c23:A (2.37) BS08 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88763 5c23:B (2.37) BS01 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88764 5c23:B (2.37) BS02 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88765 5c23:B (2.37) BS03 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88766 5c23:B (2.37) BS04 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88767 5c23:B (2.37) BS05 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88768 5c23:B (2.37) BS06 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88769 5c23:B (2.37) BS07 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88770 5c23:B (2.37) BS08 ZN 2.3.2.31 GO:0004842 ... O60260 26254304
    88771 5c24:A (2.6) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 26166629
    88772 5c25:A (2.841) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 26166629
    88773 5c28:A (1.56) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 26378882
    88774 5c28:B (1.56) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 26378882
    88775 5c29:A (2.05) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 26378882
    88776 5c29:B (2.05) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 26378882
    88777 5c2a:A (2.0) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 26378882
    88778 5c2a:B (2.0) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 26378882
    88779 5c2c:A (2.09) BS01 MG 4.1.1.39 GO:0000287 ... A0A0X1KHE5 26617072
    88780 5c2c:A (2.09) BS02 MG 4.1.1.39 GO:0000287 ... A0A0X1KHE5 26617072
    88781 5c2c:B (2.09) BS01 MG 4.1.1.39 GO:0000287 ... A0A0X1KHE5 26617072
    88782 5c2c:B (2.09) BS02 MG 4.1.1.39 GO:0000287 ... A0A0X1KHE5 26617072
    88783 5c2c:C (2.09) BS01 MG 4.1.1.39 GO:0000287 ... A0A0X1KHE5 26617072
    88784 5c2c:C (2.09) BS02 MG 4.1.1.39 GO:0000287 ... A0A0X1KHE5 26617072
    88785 5c2d:A (1.59) BS01 CA ? N/A Q716H3 26450964
    88786 5c2e:A (2.1) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 26378882
    88787 5c2e:B (2.1) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 26378882
    88788 5c2f:A (1.86) BS01 MN ? N/A Q716H3 26450964
    88789 5c2f:A (1.86) BS02 MN ? N/A Q716H3 26450964
    88790 5c2g:A (2.597) BS02 MG 4.1.1.39 GO:0000287 ... A0A0X1KHE5 26617072
    88791 5c2g:B (2.597) BS02 MG 4.1.1.39 GO:0000287 ... A0A0X1KHE5 26617072
    88792 5c2g:C (2.597) BS03 MG 4.1.1.39 GO:0000287 ... A0A0X1KHE5 26617072
    88793 5c2g:D (2.597) BS02 MG 4.1.1.39 GO:0000287 ... A0A0X1KHE5 26617072
    88794 5c2g:E (2.597) BS03 MG 4.1.1.39 GO:0000287 ... A0A0X1KHE5 26617072
    88795 5c2g:F (2.597) BS03 MG 4.1.1.39 GO:0000287 ... A0A0X1KHE5 26617072
    88796 5c2h:A (2.09) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 26378882
    88797 5c2h:B (2.09) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 26378882
    88798 5c2j:B (2.5) BS01 MG 3.6.5.2 GO:0000139 ... P60766 N/A
    88799 5c2k:A (1.42) BS01 MG ?
    3.6.5.2
    GO:0000902 ... P61586
    Q9H0H5
    N/A
    88800 5c2l:A (2.009) BS01 MG 2.4.2.18 GO:0000162 ... P9WFX5 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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