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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    88401 5bmv:C (2.5) BS02 CA 3.6.5.- GO:0000226 ... P81947 26660762
    88402 5bn2:A (1.3) BS01 CA ? GO:0005789 ... F2QVG4 N/A
    88403 5bn3:A (2.0) BS02 MG 7.1.2.2 GO:0005524 ... Q74MJ7 26370083
    88404 5bn4:A (2.699) BS02 MG 7.1.2.2 GO:0005524 ... Q74MJ7 26370083
    88405 5bn8:A (1.34) BS01 MG ? GO:0005524 ... P0DMV8 N/A
    88406 5bnl:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 19911821
    88407 5boe:A (1.6) BS02 MG 4.2.1.11 GO:0000015 ... O69174 26627653
    88408 5boe:B (1.6) BS02 MG 4.2.1.11 GO:0000015 ... O69174 26627653
    88409 5bof:A (2.45) BS01 MG 4.2.1.11 GO:0000015 ... O69174 26627653
    88410 5bof:B (2.45) BS01 MG 4.2.1.11 GO:0000015 ... O69174 26627653
    88411 5bol:A (1.981) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 26243878
    88412 5bol:A (1.981) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 26243878
    88413 5bon:A (1.799) BS01 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    88414 5bon:A (1.799) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    88415 5bon:B (1.799) BS01 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    88416 5bon:B (1.799) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    88417 5bon:C (1.799) BS01 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    88418 5bon:C (1.799) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    88419 5bon:D (1.799) BS01 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    88420 5bon:D (1.799) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    88421 5bon:E (1.799) BS01 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    88422 5bon:E (1.799) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    88423 5bon:F (1.799) BS01 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    88424 5bon:F (1.799) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    88425 5bon:G (1.799) BS01 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    88426 5bon:G (1.799) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    88427 5bon:H (1.799) BS01 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    88428 5bon:H (1.799) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    88429 5bot:A (1.85) BS02 ZN 3.4.24.- GO:0004222 ... P45452 22017539
    88430 5bot:A (1.85) BS03 ZN 3.4.24.- GO:0004222 ... P45452 22017539
    88431 5bot:A (1.85) BS04 CA 3.4.24.- GO:0004222 ... P45452 22017539
    88432 5bot:A (1.85) BS05 CA 3.4.24.- GO:0004222 ... P45452 22017539
    88433 5bot:A (1.85) BS06 CA 3.4.24.- GO:0004222 ... P45452 22017539
    88434 5bot:B (1.85) BS02 ZN 3.4.24.- GO:0004222 ... P45452 22017539
    88435 5bot:B (1.85) BS03 ZN 3.4.24.- GO:0004222 ... P45452 22017539
    88436 5bot:B (1.85) BS04 CA 3.4.24.- GO:0004222 ... P45452 22017539
    88437 5bot:B (1.85) BS05 CA 3.4.24.- GO:0004222 ... P45452 22017539
    88438 5bot:B (1.85) BS06 CA 3.4.24.- GO:0004222 ... P45452 22017539
    88439 5bou:G (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26242779
    88440 5bou:I (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26242779
    88441 5bou:K (2.6) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26242779
    88442 5bou:N (2.6) BS02 MG 3.4.25.1 GO:0000502 ... P38624 26242779
    88443 5bou:V (2.6) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26242779
    88444 5bou:W (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26242779
    88445 5bou:Y (2.6) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26242779
    88446 5bou:Z (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26242779
    88447 5boy:A (2.03) BS01 ZN 3.4.24.- GO:0004222 ... P45452 22017539
    88448 5boy:A (2.03) BS02 ZN 3.4.24.- GO:0004222 ... P45452 22017539
    88449 5boy:A (2.03) BS03 CA 3.4.24.- GO:0004222 ... P45452 22017539
    88450 5boy:A (2.03) BS04 CA 3.4.24.- GO:0004222 ... P45452 22017539
    88451 5boy:A (2.03) BS05 CA 3.4.24.- GO:0004222 ... P45452 22017539
    88452 5boy:B (2.03) BS01 ZN 3.4.24.- GO:0004222 ... P45452 22017539
    88453 5boy:B (2.03) BS02 ZN 3.4.24.- GO:0004222 ... P45452 22017539
    88454 5boy:B (2.03) BS03 CA 3.4.24.- GO:0004222 ... P45452 22017539
    88455 5boy:B (2.03) BS04 CA 3.4.24.- GO:0004222 ... P45452 22017539
    88456 5boy:B (2.03) BS05 CA 3.4.24.- GO:0004222 ... P45452 22017539
    88457 5bp2:A (1.75) BS01 MG 2.3.1.- N/A A0R1E8 26976449
    88458 5bpa:A (1.79) BS01 ZN 3.4.24.- GO:0004222 ... P45452 22017539
    88459 5bpa:A (1.79) BS02 ZN 3.4.24.- GO:0004222 ... P45452 22017539
    88460 5bpa:A (1.79) BS03 CA 3.4.24.- GO:0004222 ... P45452 22017539
    88461 5bpa:A (1.79) BS04 CA 3.4.24.- GO:0004222 ... P45452 22017539
    88462 5bpa:A (1.79) BS05 CA 3.4.24.- GO:0004222 ... P45452 22017539
    88463 5bpa:B (1.79) BS01 ZN 3.4.24.- GO:0004222 ... P45452 22017539
    88464 5bpa:B (1.79) BS02 ZN 3.4.24.- GO:0004222 ... P45452 22017539
    88465 5bpa:B (1.79) BS03 CA 3.4.24.- GO:0004222 ... P45452 22017539
    88466 5bpa:B (1.79) BS04 CA 3.4.24.- GO:0004222 ... P45452 22017539
    88467 5bpa:B (1.79) BS05 CA 3.4.24.- GO:0004222 ... P45452 22017539
    88468 5bpc:A (2.0) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 26243878
    88469 5bpc:A (2.0) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 26243878
    88470 5bpj:A (1.756) BS01 MG ? GO:0005509 ... H8ZZK1 26690016
    88471 5bpj:A (1.756) BS02 MG ? GO:0005509 ... H8ZZK1 26690016
    88472 5bpj:A (1.756) BS03 MG ? GO:0005509 ... H8ZZK1 26690016
    88473 5bpp:A (2.03) BS01 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 27126280
    88474 5bpx:A (1.88) BS01 FE 1.13.11.41 N/A Q9REI7 26457516
    88475 5bq1:A (1.6) BS01 ZN 4.2.1.1 GO:0004089 ... Q9HVB9 26457866
    88476 5bqk:A (2.0) BS01 ZN ? GO:0006355 ... P10238 26085142
    88477 5bqk:B (2.0) BS01 ZN ? GO:0006355 ... P10238 26085142
    88478 5bqk:C (2.0) BS01 ZN ? GO:0006355 ... P10238 26085142
    88479 5bqm:A (3.1) BS01 ZN 3.4.24.69 GO:0004222 ... P19321 26324071
    88480 5bqm:C (3.1) BS01 ZN 3.4.24.69 GO:0004222 ... P19321 26324071
    88481 5bqt:D (3.0) BS01 CA ? GO:0003677 ... Q8U3H1 26299937
    88482 5br4:A (0.91) BS01 ZN 1.1.1.77 GO:0000166 ... P0A9S1 26512129
    88483 5br4:B (0.91) BS01 ZN 1.1.1.77 GO:0000166 ... P0A9S1 26512129
    88484 5br8:D (3.4) BS02 MG ? GO:0003723 ... P80373 N/A
    88485 5br8:J (3.4) BS02 MG ? GO:0000049 ... Q5SHN7 N/A
    88486 5br8:N (3.4) BS02 ZN ? GO:0003735 ... P0DOY6 N/A
    88487 5br8:Q (3.4) BS02 MG ? GO:0003735 ... P0DOY7 N/A
    88488 5br8:T (3.4) BS02 MG ? GO:0003723 ... P80380 N/A
    88489 5brj:A (1.922) BS01 MG N/A GO:0000160 ... N/A 26833410
    88490 5brk:A (2.3) BS01 ZN ? GO:0005515 ... Q9H8S9 26108669
    88491 5brm:A (2.651) BS03 ZN ? N/A Q9H8S9 26108669
    88492 5brm:B (2.651) BS03 ZN ? N/A Q9H8S9 26108669
    88493 5brm:C (2.651) BS03 ZN ? N/A Q9H8S9 26108669
    88494 5brm:D (2.651) BS03 ZN ? N/A Q9H8S9 26108669
    88495 5brm:E (2.651) BS03 ZN ? N/A Q9H8S9 26108669
    88496 5brm:F (2.651) BS03 ZN ? N/A Q9H8S9 26108669
    88497 5brn:A (2.3) BS01 MG 2.4.2.8 GO:0000166 ... P00492 26368337
    88498 5brn:B (2.3) BS01 MG 2.4.2.8 GO:0000166 ... P00492 26368337
    88499 5brn:C (2.3) BS01 MG 2.4.2.8 GO:0000166 ... P00492 26368337
    88500 5brn:D (2.3) BS01 MG 2.4.2.8 GO:0000166 ... P00492 26368337
    88501 5brp:A (2.05) BS02 MG 3.2.1.93 GO:0004556 ... Q65MI2 26894535
    88502 5brp:B (2.05) BS02 MG 3.2.1.93 GO:0004556 ... Q65MI2 26894535
    88503 5brp:C (2.05) BS02 MG 3.2.1.93 GO:0004556 ... Q65MI2 26894535
    88504 5brp:D (2.05) BS01 MG 3.2.1.93 GO:0004556 ... Q65MI2 26894535
    88505 5brq:A (2.003) BS01 MG 3.2.1.93 GO:0004556 ... Q65MI2 26894535
    88506 5brq:B (2.003) BS01 MG 3.2.1.93 GO:0004556 ... Q65MI2 26894535
    88507 5brq:C (2.003) BS01 MG 3.2.1.93 GO:0004556 ... Q65MI2 26894535
    88508 5brq:D (2.003) BS01 MG 3.2.1.93 GO:0004556 ... Q65MI2 26894535
    88509 5bru:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 26226626
    88510 5brv:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 26226626
    88511 5brw:A (1.4) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 26226626
    88512 5bs3:B (2.65) BS03 MN 5.6.2.2 GO:0003677 ... P0A0K8
    P20831
    25851938
    88513 5bs3:D (2.65) BS03 MN 5.6.2.2 GO:0003677 ... P0A0K8
    P20831
    25851938
    88514 5bs8:B (2.399) BS05 MG 5.6.2.2 GO:0003677 ... P9WG45 26792525
    88515 5bs8:D (2.399) BS05 MG 5.6.2.2 GO:0003677 ... P9WG45 26792525
    88516 5bsk:A (2.61) BS02 MG 2.4.2.8 GO:0000166 ... P00492 26368337
    88517 5bsk:B (2.61) BS02 MG 2.4.2.8 GO:0000166 ... P00492 26368337
    88518 5bsk:C (2.61) BS02 MG 2.4.2.8 GO:0000166 ... P00492 26368337
    88519 5bsk:D (2.61) BS02 MG 2.4.2.8 GO:0000166 ... P00492 26368337
    88520 5bta:B (2.55) BS05 MG 5.6.2.2 GO:0003677 ... P9WG45 26792525
    88521 5bta:D (2.55) BS05 MG 5.6.2.2 GO:0003677 ... P9WG45 26792525
    88522 5btc:B (2.55) BS05 MG 5.6.2.2 GO:0003677 ... P9WG45 26792525
    88523 5btc:D (2.55) BS05 MG 5.6.2.2 GO:0003677 ... P9WG45 26792525
    88524 5btd:B (2.497) BS05 MG 5.6.2.2 GO:0003677 ... P9WG45 26792525
    88525 5btd:D (2.497) BS05 MG 5.6.2.2 GO:0003677 ... P9WG45 26792525
    88526 5bte:A (2.4) BS02 MN 3.1.13.-
    3.6.1.-
    GO:0000166 ... Q753P9 26101253
    88527 5bte:A (2.4) BS03 MN 3.1.13.-
    3.6.1.-
    GO:0000166 ... Q753P9 26101253
    88528 5bte:B (2.4) BS02 MN 3.1.13.-
    3.6.1.-
    GO:0000166 ... Q753P9 26101253
    88529 5bte:B (2.4) BS03 MN 3.1.13.-
    3.6.1.-
    GO:0000166 ... Q753P9 26101253
    88530 5btf:B (2.61) BS05 MG 5.6.2.2 GO:0003677 ... P9WG45 26792525
    88531 5btf:D (2.61) BS05 MG 5.6.2.2 GO:0003677 ... P9WG45 26792525
    88532 5btg:B (2.5) BS05 MG 5.6.2.2 GO:0003677 ... P9WG45 26792525
    88533 5btg:D (2.5) BS04 MG 5.6.2.2 GO:0003677 ... P9WG45 26792525
    88534 5bti:B (2.501) BS05 MG 5.6.2.2 GO:0003677 ... P9WG45 26792525
    88535 5bti:D (2.501) BS05 MG 5.6.2.2 GO:0003677 ... P9WG45 26792525
    88536 5btl:B (2.5) BS05 MG 5.6.2.2 GO:0003677 ... P9WG45 26792525
    88537 5btl:D (2.5) BS04 MG 5.6.2.2 GO:0003677 ... P9WG45 26792525
    88538 5btn:B (2.5) BS05 MG 5.6.2.2 GO:0003677 ... P9WG45 26792525
    88539 5btn:D (2.5) BS05 MG 5.6.2.2 GO:0003677 ... P9WG45 26792525
    88540 5btr:A (3.2) BS03 ZN 2.3.1.-
    2.3.1.286
    GO:0070403 ... Q96EB6 26109052
    88541 5btr:B (3.2) BS03 ZN 2.3.1.-
    2.3.1.286
    GO:0070403 ... Q96EB6 26109052
    88542 5bu5:A (1.952) BS01 CA ? GO:0046872 ... Q9AYZ3 26574546
    88543 5bu5:B (1.952) BS01 CA ? GO:0046872 ... Q9AYZ3 26574546
    88544 5bu5:D (1.952) BS01 CA ? GO:0046872 ... Q9AYZ3 26574546
    88545 5bu5:E (1.952) BS01 CA ? GO:0046872 ... Q9AYZ3 26574546
    88546 5bu5:F (1.952) BS01 CA ? GO:0046872 ... Q9AYZ3 26574546
    88547 5bu7:A (2.46) BS02 ZN ? GO:0005506 ... P0ABE7 N/A
    88548 5bu7:A (2.46) BS03 ZN ? GO:0005506 ... P0ABE7 N/A
    88549 5bu7:A (2.46) BS04 ZN ? GO:0005506 ... P0ABE7 N/A
    88550 5bu7:A (2.46) BS05 ZN ? GO:0005506 ... P0ABE7 N/A
    88551 5bu7:B (2.46) BS02 ZN ? GO:0005506 ... P0ABE7 N/A
    88552 5bu7:B (2.46) BS03 ZN ? GO:0005506 ... P0ABE7 N/A
    88553 5bu7:B (2.46) BS04 ZN ? GO:0005506 ... P0ABE7 N/A
    88554 5bu8:A (2.202) BS01 CA ? N/A Q9AYZ3 26574546
    88555 5bu8:B (2.202) BS01 CA ? GO:0046872 ... Q9AYZ3 26574546
    88556 5bua:A (1.812) BS02 ZN ? GO:0000976 ... P04637 27338200
    88557 5buc:A (1.867) BS01 ZN 1.10.5.1 GO:0001512 ... P16083 N/A
    88558 5buc:B (1.867) BS03 ZN 1.10.5.1 GO:0001512 ... P16083 N/A
    88559 5bud:A (1.99) BS02 MN 3.6.1.- GO:0000166 ... Q5AAT0 26101253
    88560 5bud:A (1.99) BS03 MN 3.6.1.- GO:0000166 ... Q5AAT0 26101253
    88561 5bud:B (1.99) BS02 MN 3.6.1.- GO:0000166 ... Q5AAT0 26101253
    88562 5bud:B (1.99) BS03 MN 3.6.1.- GO:0000166 ... Q5AAT0 26101253
    88563 5buo:A (2.31) BS03 ZN ? GO:0016020 ... P05067 N/A
    88564 5buo:A (2.31) BS04 ZN ? GO:0016020 ... P05067 N/A
    88565 5buo:A (2.31) BS05 ZN ? GO:0016020 ... P05067 N/A
    88566 5buq:B (1.98) BS01 CA 6.2.1.26 GO:0005524 ... P23971 26276389
    88567 5bv9:A (1.93) BS03 CA 3.2.1.91 GO:0003824 ... A8FDC4 26572060
    88568 5bv9:A (1.93) BS04 CA 3.2.1.91 GO:0003824 ... A8FDC4 26572060
    88569 5bv9:A (1.93) BS05 CA 3.2.1.91 GO:0003824 ... A8FDC4 26572060
    88570 5bvg:B (1.6) BS02 FE2 1.18.6.1 GO:0005524 ... P07329 26673079
    88571 5bvg:B (1.6) BS03 FE2 1.18.6.1 GO:0005524 ... P07329 26673079
    88572 5bvg:D (1.6) BS01 FE2 1.18.6.1 GO:0005524 ... P07329 26673079
    88573 5bvg:D (1.6) BS02 FE2 1.18.6.1 GO:0005524 ... P07329 26673079
    88574 5bvh:B (1.53) BS02 FE2 1.18.6.1 GO:0005524 ... P07329 26673079
    88575 5bvh:B (1.53) BS03 FE2 1.18.6.1 GO:0005524 ... P07329 26673079
    88576 5bvh:D (1.53) BS01 FE2 1.18.6.1 GO:0005524 ... P07329 26673079
    88577 5bvh:D (1.53) BS02 FE2 1.18.6.1 GO:0005524 ... P07329 26673079
    88578 5bvr:A (1.46) BS01 ZN ? N/A O13728 27069798
    88579 5bvr:A (1.46) BS02 ZN ? N/A O13728 27069798
    88580 5bvu:A (1.61) BS01 CA 3.2.1.45 GO:0004348 ... F6BL85 27115290
    88581 5bvz:A (2.5) BS01 CA ? GO:0046872 ... Q9AYZ3 26574546
    88582 5bvz:B (2.5) BS01 CA ? GO:0046872 ... Q9AYZ3 26574546
    88583 5bvz:C (2.5) BS01 CA ? GO:0046872 ... Q9AYZ3 26574546
    88584 5bvz:D (2.5) BS01 CA ? GO:0046872 ... Q9AYZ3 26574546
    88585 5bvz:E (2.5) BS01 CA ? GO:0046872 ... Q9AYZ3 26574546
    88586 5bvz:F (2.5) BS01 CA ? GO:0046872 ... Q9AYZ3 26574546
    88587 5bw8:B (2.8) BS02 ZN 3.6.-.- GO:0000750 ... Q12154 26451041
    88588 5bwg:A (1.75) BS01 FE2 ? GO:0046872 ... Q45135 26485328
    88589 5bwg:B (1.75) BS01 FE2 ? GO:0046872 ... Q45135 26485328
    88590 5bwg:B (1.75) BS02 CA ? GO:0046872 ... Q45135 26485328
    88591 5bwg:C (1.75) BS01 FE2 ? GO:0046872 ... Q45135 26485328
    88592 5bwg:D (1.75) BS01 FE2 ? GO:0046872 ... Q45135 26485328
    88593 5bwh:A (1.46) BS01 FE2 ? GO:0046872 ... Q45135 26485328
    88594 5bwh:B (1.46) BS01 FE2 ? GO:0046872 ... Q45135 26485328
    88595 5bwh:B (1.46) BS02 CA ? GO:0046872 ... Q45135 26485328
    88596 5bwh:C (1.46) BS01 FE2 ? GO:0046872 ... Q45135 26485328
    88597 5bwh:D (1.46) BS01 FE2 ? GO:0046872 ... Q45135 26485328
    88598 5bwk:N (6.0) BS01 ZN 3.6.-.- GO:0000750 ... Q12154 26451041
    88599 5bwl:A (1.548) BS02 ZN 2.3.1.- GO:0036054 ... Q9NXA8 N/A
    88600 5bwm:A (2.5) BS02 MG 3.6.5.2 GO:0000902 ... P61586 26067270

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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