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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    88201 5b4x:C (3.2) BS03 CA 3.4.21.- GO:0001764 ... Q60841 N/A
    88202 5b4x:C (3.2) BS04 CA 3.4.21.- GO:0001764 ... Q60841 N/A
    88203 5b4x:D (3.2) BS01 CA ? GO:0005509 ... Q14114 N/A
    88204 5b4x:D (3.2) BS02 CA ? GO:0005509 ... Q14114 N/A
    88205 5b4x:D (3.2) BS03 CA ? GO:0005509 ... Q14114 N/A
    88206 5b4x:D (3.2) BS04 CA ? GO:0005509 ... Q14114 N/A
    88207 5b4y:B (1.9) BS01 CA ? N/A Q14114 N/A
    88208 5b4y:B (1.9) BS02 CA ? N/A Q14114 N/A
    88209 5b5e:A (1.87) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 28102667
    88210 5b5e:D (1.87) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    88211 5b5e:J (1.87) BS02 MG ? GO:0009523 ... Q7DGD4 28102667
    88212 5b5e:O (1.87) BS01 CA ? GO:0009523 ... D0VWR2 28102667
    88213 5b5e:a (1.87) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 28102667
    88214 5b5e:c (1.87) BS02 CA ? GO:0005737 ... D0VWR7 28102667
    88215 5b5e:d (1.87) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    88216 5b5e:j (1.87) BS01 MG ? GO:0009523 ... Q7DGD4 28102667
    88217 5b5e:o (1.87) BS01 CA ? GO:0009523 ... D0VWR2 28102667
    88218 5b5l:A (1.4) BS01 CA ? N/A A0A0A8IBJ8 N/A
    88219 5b5m:L (3.3) BS06 FE ? GO:0005515 ... D2Z0P3 27933779
    88220 5b5m:M (3.3) BS04 FE ? GO:0005515 ... A8ASG6 27933779
    88221 5b5m:x (3.3) BS06 FE ? GO:0005515 ... D2Z0P3 27933779
    88222 5b5m:y (3.3) BS03 FE ? GO:0005515 ... A8ASG6 27933779
    88223 5b5n:L (3.3) BS05 FE ? GO:0005515 ... D2Z0P3 27933779
    88224 5b5n:M (3.3) BS04 FE ? GO:0005515 ... A8ASG6 27933779
    88225 5b5n:x (3.3) BS06 FE ? GO:0005515 ... D2Z0P3 27933779
    88226 5b5n:y (3.3) BS04 FE ? GO:0005515 ... A8ASG6 27933779
    88227 5b5o:A (1.2) BS01 ZN 3.4.24.- GO:0004222 ... P45452 27966948
    88228 5b5o:A (1.2) BS02 ZN 3.4.24.- GO:0004222 ... P45452 27966948
    88229 5b5o:A (1.2) BS03 CA 3.4.24.- GO:0004222 ... P45452 27966948
    88230 5b5o:A (1.2) BS04 CA 3.4.24.- GO:0004222 ... P45452 27966948
    88231 5b5o:B (1.2) BS01 ZN 3.4.24.- GO:0004222 ... P45452 27966948
    88232 5b5o:B (1.2) BS02 ZN 3.4.24.- GO:0004222 ... P45452 27966948
    88233 5b5o:B (1.2) BS03 CA 3.4.24.- GO:0004222 ... P45452 27966948
    88234 5b5o:B (1.2) BS04 CA 3.4.24.- GO:0004222 ... P45452 27966948
    88235 5b5p:A (1.6) BS01 ZN 3.4.24.- GO:0004222 ... P45452 27966948
    88236 5b5p:A (1.6) BS02 ZN 3.4.24.- GO:0004222 ... P45452 27966948
    88237 5b5p:A (1.6) BS03 CA 3.4.24.- GO:0004222 ... P45452 27966948
    88238 5b5p:A (1.6) BS04 CA 3.4.24.- GO:0004222 ... P45452 27966948
    88239 5b5p:A (1.6) BS05 CA 3.4.24.- GO:0004222 ... P45452 27966948
    88240 5b5p:B (1.6) BS01 ZN 3.4.24.- GO:0004222 ... P45452 27966948
    88241 5b5p:B (1.6) BS02 ZN 3.4.24.- GO:0004222 ... P45452 27966948
    88242 5b5p:B (1.6) BS03 CA 3.4.24.- GO:0004222 ... P45452 27966948
    88243 5b5p:B (1.6) BS04 CA 3.4.24.- GO:0004222 ... P45452 27966948
    88244 5b5p:B (1.6) BS05 CA 3.4.24.- GO:0004222 ... P45452 27966948
    88245 5b5s:A (1.5) BS01 CA ? N/A A0A0A8IBJ8 25825334
    88246 5b5t:B (1.7) BS02 CA 2.3.2.2
    3.4.19.13
    GO:0006751 ... P18956 27622749
    88247 5b5t:D (1.7) BS02 CA 2.3.2.2
    3.4.19.13
    GO:0006751 ... P18956 27622749
    88248 5b5v:A (2.193) BS02 ZN ? GO:0005634 ... Q8BPB0 27335147
    88249 5b5v:B (2.193) BS01 ZN ? GO:0005634 ... Q8BPB0 27335147
    88250 5b5v:C (2.193) BS02 ZN ? GO:0005634 ... Q8BPB0 27335147
    88251 5b5v:D (2.193) BS01 ZN ? GO:0005634 ... Q8BPB0 27335147
    88252 5b5w:A (2.957) BS01 ZN ? N/A Q8BPB0 27335147
    88253 5b5x:A (2.511) BS01 ZN ? N/A Q75NZ1 27911826
    88254 5b5y:A (1.75) BS01 ZN ? GO:0046872 ... B7FR29 27911826
    88255 5b5y:B (1.75) BS01 ZN ? GO:0046872 ... B7FR29 27911826
    88256 5b5z:A (1.6) BS01 ZN ? GO:0046872 ... B7FR29 27911826
    88257 5b5z:B (1.6) BS01 ZN ? GO:0046872 ... B7FR29 27911826
    88258 5b60:A (2.2) BS01 ZN ? GO:0046872 ... B7FR29 27911826
    88259 5b66:A (1.85) BS06 FE2 1.10.3.9 GO:0005506 ... P51765 28102667
    88260 5b66:D (1.85) BS05 FE2 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    88261 5b66:J (1.85) BS02 MG ? GO:0009523 ... Q7DGD4 28102667
    88262 5b66:O (1.85) BS01 CA ? GO:0009523 ... D0VWR2 28102667
    88263 5b66:a (1.85) BS07 FE2 1.10.3.9 GO:0005506 ... P51765 28102667
    88264 5b66:c (1.85) BS15 CA ? GO:0005737 ... D0VWR7 28102667
    88265 5b66:d (1.85) BS05 FE2 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    88266 5b66:j (1.85) BS01 MG ? GO:0009523 ... Q7DGD4 28102667
    88267 5b66:o (1.85) BS01 CA ? GO:0009523 ... D0VWR2 28102667
    88268 5b6b:A (3.536) BS01 ZN ? GO:0005634 ... Q8BPB0 27335147
    88269 5b6b:B (3.536) BS01 ZN ? GO:0005634 ... Q8BPB0 27335147
    88270 5b6b:D (3.536) BS01 ZN ? GO:0005634 ... Q8BPB0 27335147
    88271 5b6b:F (3.536) BS01 ZN ? GO:0005634 ... Q8BPB0 27335147
    88272 5b6b:H (3.536) BS01 ZN ? GO:0005634 ... Q8BPB0 27335147
    88273 5b6b:K (3.536) BS01 ZN ? GO:0005634 ... Q8BPB0 27335147
    88274 5b6b:M (3.536) BS01 ZN ? GO:0005634 ... Q8BPB0 27335147
    88275 5b6b:O (3.536) BS01 ZN ? GO:0005634 ... Q8BPB0 27335147
    88276 5b72:A (1.98) BS02 CA 1.11.1.7 GO:0004601 ... P80025 27986533
    88277 5b73:A (1.8) BS01 ZN ? GO:0006355 ... Q9ULU4 27477906
    88278 5b73:A (1.8) BS02 ZN ? GO:0006355 ... Q9ULU4 27477906
    88279 5b73:A (1.8) BS03 ZN ? GO:0006355 ... Q9ULU4 27477906
    88280 5b75:A (1.704) BS02 ZN 2.3.1.48 N/A Q92794 27775714
    88281 5b75:A (1.704) BS03 ZN 2.3.1.48 N/A Q92794 27775714
    88282 5b75:A (1.704) BS04 ZN 2.3.1.48 N/A Q92794 27775714
    88283 5b75:A (1.704) BS05 ZN 2.3.1.48 N/A Q92794 27775714
    88284 5b76:A (1.653) BS02 ZN 2.3.1.48 N/A Q92794 27775714
    88285 5b76:A (1.653) BS03 ZN 2.3.1.48 N/A Q92794 27775714
    88286 5b76:A (1.653) BS04 ZN 2.3.1.48 N/A Q92794 27775714
    88287 5b76:A (1.653) BS05 ZN 2.3.1.48 N/A Q92794 27775714
    88288 5b77:A (1.551) BS02 ZN 2.3.1.48 N/A Q92794 27775714
    88289 5b77:A (1.551) BS03 ZN 2.3.1.48 N/A Q92794 27775714
    88290 5b77:A (1.551) BS04 ZN 2.3.1.48 N/A Q92794 27775714
    88291 5b77:A (1.551) BS05 ZN 2.3.1.48 N/A Q92794 27775714
    88292 5b78:A (1.4) BS02 ZN 2.3.1.48 N/A Q92794 27775714
    88293 5b78:A (1.4) BS03 ZN 2.3.1.48 N/A Q92794 27775714
    88294 5b78:A (1.4) BS04 ZN 2.3.1.48 N/A Q92794 27775714
    88295 5b78:A (1.4) BS05 ZN 2.3.1.48 N/A Q92794 27775714
    88296 5b79:A (2.601) BS01 ZN ? N/A Q92785 27775714
    88297 5b79:A (2.601) BS02 ZN ? N/A Q92785 27775714
    88298 5b79:A (2.601) BS03 ZN ? N/A Q92785 27775714
    88299 5b79:A (2.601) BS04 ZN ? N/A Q92785 27775714
    88300 5b7e:A (1.42) BS01 CU 1.16.3.4 GO:0005507 ... P36649 27710945
    88301 5b7e:A (1.42) BS02 CU 1.16.3.4 GO:0005507 ... P36649 27710945
    88302 5b7f:A (1.45) BS01 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    88303 5b7f:A (1.45) BS02 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    88304 5b7f:A (1.45) BS03 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    88305 5b7f:A (1.45) BS04 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    88306 5b7i:A (2.6) BS01 CA 3.1.-.-
    3.6.4.-
    GO:0004386 ... Q02ML8 27455460
    88307 5b7i:A (2.6) BS02 CA 3.1.-.-
    3.6.4.-
    GO:0004386 ... Q02ML8 27455460
    88308 5b7m:A (1.8) BS01 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    88309 5b7m:A (1.8) BS02 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    88310 5b7m:A (1.8) BS03 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    88311 5b7m:A (1.8) BS04 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    88312 5b7m:B (1.8) BS01 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    88313 5b7m:B (1.8) BS02 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    88314 5b7m:B (1.8) BS03 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    88315 5b7m:B (1.8) BS04 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    88316 5b7m:C (1.8) BS01 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    88317 5b7m:C (1.8) BS02 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    88318 5b7m:C (1.8) BS03 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    88319 5b7m:C (1.8) BS04 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    88320 5b7x:A (-1.00) BS01 CA ? GO:0005509 ... M7WXJ8 N/A
    88321 5b7x:A (-1.00) BS02 CA ? GO:0005509 ... M7WXJ8 N/A
    88322 5b7y:A (1.32) BS01 CO 5.1.3.-
    5.3.1.-
    GO:0006020 ... Q9WYP7 28258150
    88323 5b7y:B (1.32) BS01 CO 5.1.3.-
    5.3.1.-
    GO:0006020 ... Q9WYP7 28258150
    88324 5b80:A (1.7) BS01 CU 5.1.3.-
    5.3.1.-
    GO:0006020 ... Q9WYP7 28258150
    88325 5b80:B (1.7) BS01 CU 5.1.3.-
    5.3.1.-
    GO:0006020 ... Q9WYP7 28258150
    88326 5b8d:A (1.05) BS01 ZN 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 29019676
    88327 5b8d:A (1.05) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 29019676
    88328 5b8d:A (1.05) BS03 ZN 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 29019676
    88329 5b8f:A (1.45) BS01 MG 4.6.1.12 GO:0008299 ... P57708 N/A
    88330 5b8f:B (1.45) BS01 MG 4.6.1.12 GO:0008299 ... P57708 N/A
    88331 5b8f:C (1.45) BS01 MG 4.6.1.12 GO:0008299 ... P57708 N/A
    88332 5b8i:A (1.85) BS01 ZN 3.1.3.16 GO:0016787 ... J3K8M7 31537789
    88333 5b8i:A (1.85) BS02 FE 3.1.3.16 GO:0016787 ... J3K8M7 31537789
    88334 5b8i:B (1.85) BS01 CA ? GO:0005509 ... A0A0D8JSK0 31537789
    88335 5b8i:B (1.85) BS02 CA ? GO:0005509 ... A0A0D8JSK0 31537789
    88336 5b8i:B (1.85) BS03 CA ? GO:0005509 ... A0A0D8JSK0 31537789
    88337 5b8i:B (1.85) BS04 CA ? GO:0005509 ... A0A0D8JSK0 31537789
    88338 5bca:A (2.2) BS01 CA 3.2.1.2 GO:0000272 ... P36924 10348915
    88339 5bca:B (2.2) BS01 CA 3.2.1.2 GO:0000272 ... P36924 10348915
    88340 5bca:C (2.2) BS01 CA 3.2.1.2 GO:0000272 ... P36924 10348915
    88341 5bca:D (2.2) BS01 CA 3.2.1.2 GO:0000272 ... P36924 10348915
    88342 5bir:B (2.0) BS01 CA 4.6.1.24 GO:0001411 ... P00651 9466938
    88343 5bjs:B (2.189) BS01 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    28607149
    88344 5bjs:B (2.189) BS02 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    28607149
    88345 5bjs:B (2.189) BS03 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    28607149
    88346 5bjs:B (2.189) BS04 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    28607149
    88347 5bjs:B (2.189) BS05 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    28607149
    88348 5bjs:B (2.189) BS06 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    28607149
    88349 5bjs:B (2.189) BS07 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    28607149
    88350 5bjs:B (2.189) BS08 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    28607149
    88351 5bkb:A (1.582) BS01 MN 1.14.11.44 GO:0005737 ... P83310 31209034
    88352 5bkb:B (1.582) BS01 MN 1.14.11.44 GO:0005737 ... P83310 31209034
    88353 5bkc:A (1.8) BS01 MN 1.14.11.44 GO:0005737 ... P83310 31209034
    88354 5bkc:B (1.8) BS01 MN 1.14.11.44 GO:0005737 ... P83310 31209034
    88355 5bkd:A (1.9) BS01 MN 1.14.11.44 GO:0005737 ... P83310 31209034
    88356 5bkd:B (1.9) BS01 MN 1.14.11.44 GO:0005737 ... P83310 31209034
    88357 5bke:A (2.15) BS01 MN 1.14.11.- GO:0016491 ... Q89UC4 31209034
    88358 5bke:B (2.15) BS01 MN 1.14.11.- GO:0016491 ... Q89UC4 31209034
    88359 5bke:C (2.15) BS01 MN 1.14.11.- GO:0016491 ... Q89UC4 31209034
    88360 5bke:D (2.15) BS01 MN 1.14.11.- GO:0016491 ... Q89UC4 31209034
    88361 5bke:E (2.15) BS01 MN 1.14.11.- GO:0016491 ... Q89UC4 31209034
    88362 5bke:F (2.15) BS01 MN 1.14.11.- GO:0016491 ... Q89UC4 31209034
    88363 5bke:G (2.15) BS01 MN 1.14.11.- GO:0016491 ... Q89UC4 31209034
    88364 5bkl:E (2.94) BS04 MG ? GO:0005198 ... P17574 34866603
    88365 5bkl:F (2.94) BS03 MG ? GO:0005198 ... P17574 34866603
    88366 5bkl:G (2.94) BS03 MG ? GO:0005198 ... P17574 34866603
    88367 5bkl:GG (2.94) BS04 MG ? GO:0005198 ... P17574 34866603
    88368 5bkl:HH (2.94) BS04 MG ? GO:0005198 ... P17574 34866603
    88369 5bkl:HH (2.94) BS05 MG ? GO:0005198 ... P17574 34866603
    88370 5bkl:I (2.94) BS03 MG ? GO:0005198 ... P17574 34866603
    88371 5bkl:JJ (2.94) BS01 MG ? GO:0005198 ... P17574 34866603
    88372 5bkl:JJ (2.94) BS02 MG ? GO:0005198 ... P17574 34866603
    88373 5bkl:K (2.94) BS04 MG ? GO:0005198 ... P17574 34866603
    88374 5bkl:KK (2.94) BS03 MG ? GO:0005198 ... P17574 34866603
    88375 5bkn:A (3.0) BS02 MG ? GO:0005198 ... P17574 34866603
    88376 5bkn:B (3.0) BS01 MG ? GO:0005198 ... P17574 34866603
    88377 5bkn:F (3.0) BS03 MG ? GO:0005198 ... P17574 34866603
    88378 5bkn:G (3.0) BS03 MG ? GO:0005198 ... P17574 34866603
    88379 5bkn:H (3.0) BS01 MG ? GO:0005198 ... P17574 34866603
    88380 5bkn:II (3.0) BS02 MG ? GO:0005198 ... P17574 34866603
    88381 5bkn:J (3.0) BS02 MG ? GO:0005198 ... P17574 34866603
    88382 5bkn:JJ (3.0) BS01 MG ? GO:0005198 ... P17574 34866603
    88383 5bkn:K (3.0) BS03 MG ? GO:0005198 ... P17574 34866603
    88384 5bkn:K (3.0) BS04 MG ? GO:0005198 ... P17574 34866603
    88385 5bkn:K (3.0) BS05 MG ? GO:0005198 ... P17574 34866603
    88386 5bkn:L (3.0) BS01 MG ? GO:0005198 ... P17574 34866603
    88387 5bkn:M (3.0) BS01 MG ? GO:0005198 ... P17574 34866603
    88388 5bkn:O (3.0) BS03 MG ? GO:0005198 ... P17574 34866603
    88389 5bkq:A (3.19) BS01 MG ? GO:0005198 ... P17574 34866603
    88390 5bkq:F (3.19) BS01 MG ? GO:0005198 ... P17574 34866603
    88391 5bkq:G (3.19) BS01 MG ? GO:0005198 ... P17574 34866603
    88392 5bkq:H (3.19) BS01 MG ? GO:0005198 ... P17574 34866603
    88393 5bkq:II (3.19) BS01 MG ? GO:0005198 ... P17574 34866603
    88394 5bkq:JJ (3.19) BS01 MG ? GO:0005198 ... P17574 34866603
    88395 5bkq:K (3.19) BS01 MG ? GO:0005198 ... P17574 34866603
    88396 5bkq:M (3.19) BS01 MG ? GO:0005198 ... P17574 34866603
    88397 5bkq:O (3.19) BS01 MG ? GO:0005198 ... P17574 34866603
    88398 5bmn:A (1.27) BS01 MG N/A GO:0000287 ... N/A 27567706
    88399 5bmp:A (1.85) BS02 MG N/A GO:0000287 ... N/A 27567706
    88400 5bmv:A (2.5) BS02 CA 3.6.5.- GO:0000226 ... P81947 26660762

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218