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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    88001 5avj:A (1.45) BS01 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    88002 5avj:A (1.45) BS02 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    88003 5avn:A (1.03) BS01 MN 5.3.1.5 GO:0000287 ... P24300 22435400
    88004 5avn:A (1.03) BS02 CA 5.3.1.5 GO:0000287 ... P24300 22435400
    88005 5avn:B (1.03) BS01 MN 5.3.1.5 GO:0000287 ... P24300 22435400
    88006 5avn:B (1.03) BS02 CA 5.3.1.5 GO:0000287 ... P24300 22435400
    88007 5avp:A (2.9) BS01 MN 5.3.1.- GO:0046872 ... D2S5K0 N/A
    88008 5avp:B (2.9) BS01 MN 5.3.1.- GO:0046872 ... D2S5K0 N/A
    88009 5avp:C (2.9) BS01 MN 5.3.1.- GO:0046872 ... D2S5K0 N/A
    88010 5avp:D (2.9) BS01 MN 5.3.1.- GO:0046872 ... D2S5K0 N/A
    88011 5avq:A (2.6) BS02 MG ? GO:0000166 ... Q4H132 26258479
    88012 5avr:A (2.7) BS02 MG ? GO:0000166 ... Q4H132 26258479
    88013 5avs:A (2.9) BS02 MG ? GO:0000166 ... Q4H132 26258479
    88014 5avt:A (2.9) BS02 MG ? GO:0000166 ... Q4H132 26258479
    88015 5avu:A (2.55) BS02 MG ? GO:0000166 ... Q4H132 26258479
    88016 5avv:A (2.9) BS02 MG ? GO:0000166 ... Q4H132 26258479
    88017 5avw:A (2.6) BS02 MG ? GO:0000166 ... Q4H132 26258479
    88018 5avx:A (3.3) BS02 MG ? GO:0000166 ... Q4H132 26258479
    88019 5avy:A (3.45) BS02 MG ? GO:0000166 ... Q4H132 26258479
    88020 5avz:A (3.2) BS02 MG ? GO:0000166 ... Q4H132 26258479
    88021 5aw0:A (3.3) BS02 MG ? GO:0000166 ... Q4H132 26258479
    88022 5aw1:A (3.35) BS02 MG ? GO:0000166 ... Q4H132 26258479
    88023 5aw2:A (3.2) BS02 MG ? GO:0000166 ... Q4H132 26258479
    88024 5aw3:A (3.35) BS02 MG ? GO:0000166 ... Q4H132 26258479
    88025 5aw4:A (2.8) BS02 MG ? GO:0000166 ... Q4H132 26258479
    88026 5aw5:A (2.9) BS02 MG ? GO:0000166 ... Q4H132 26258479
    88027 5aw6:A (2.8) BS02 MG ? GO:0000166 ... Q4H132 26258479
    88028 5aw7:A (2.9) BS02 MG ? GO:0000166 ... Q4H132 26258479
    88029 5aw8:A (2.8) BS02 MG ? GO:0000166 ... Q4H132 26258479
    88030 5aw9:A (2.8) BS02 MG ? GO:0000166 ... Q4H132 26258479
    88031 5awi:A (1.85) BS02 ZN ? GO:0005506 ... P0ABE7 N/A
    88032 5awi:B (1.85) BS03 ZN ? GO:0005506 ... P0ABE7 N/A
    88033 5awi:B (1.85) BS04 ZN ? GO:0005506 ... P0ABE7 N/A
    88034 5awr:A (2.502) BS01 ZN ? GO:0072583 ... Q9BQI5 26822536
    88035 5awr:A (2.502) BS02 ZN ? GO:0072583 ... Q9BQI5 26822536
    88036 5aws:A (2.001) BS01 ZN ? GO:0072583 ... Q9BQI5 26822536
    88037 5aws:A (2.001) BS02 ZN ? GO:0072583 ... Q9BQI5 26822536
    88038 5aws:A (2.001) BS03 ZN ? GO:0072583 ... Q9BQI5 26822536
    88039 5aws:B (2.001) BS01 ZN ? GO:0072583 ... Q9BQI5 26822536
    88040 5aws:B (2.001) BS02 ZN ? GO:0072583 ... Q9BQI5 26822536
    88041 5aws:B (2.001) BS03 ZN ? GO:0072583 ... Q9BQI5 26822536
    88042 5awt:A (2.702) BS02 ZN ? GO:0072583 ... Q9BQI5 26822536
    88043 5awt:A (2.702) BS03 ZN ? GO:0072583 ... Q9BQI5 26822536
    88044 5awu:A (2.7) BS02 ZN ? GO:0072583 ... Q9BQI5 26822536
    88045 5ax7:B (2.46) BS01 ZN 2.-.-.- GO:0005737 ... Q9UT27 27194449
    88046 5axi:A (2.5) BS01 CA 2.3.2.27 GO:0001784 ... Q3TTA7 26874193
    88047 5axi:B (2.5) BS02 CA 2.3.2.27 GO:0001784 ... Q3TTA7 26874193
    88048 5axi:C (2.5) BS01 CA 2.3.2.27 GO:0001784 ... Q3TTA7 26874193
    88049 5axl:A (2.998) BS02 MG ? GO:0000287 ... A0A1C7D1G9 27051866
    88050 5axl:A (2.998) BS03 MG ? GO:0000287 ... A0A1C7D1G9 27051866
    88051 5axl:B (2.998) BS02 MG ? GO:0000287 ... A0A1C7D1G9 27051866
    88052 5axl:B (2.998) BS03 MG ? GO:0000287 ... A0A1C7D1G9 27051866
    88053 5axm:A (2.21) BS02 MG ? GO:0000287 ... A0A1C7D1G9 27051866
    88054 5axm:A (2.21) BS03 MG ? GO:0000287 ... A0A1C7D1G9 27051866
    88055 5axm:B (2.21) BS02 MG ? GO:0000287 ... A0A1C7D1G9 27051866
    88056 5axm:B (2.21) BS03 MG ? GO:0000287 ... A0A1C7D1G9 27051866
    88057 5axn:A (2.703) BS02 MG ? GO:0000287 ... A0A1C7D1G9 27051866
    88058 5axn:A (2.703) BS03 MG ? GO:0000287 ... A0A1C7D1G9 27051866
    88059 5axn:B (2.703) BS04 MG ? GO:0000287 ... A0A1C7D1G9 27051866
    88060 5axo:A (1.39) BS01 ZN 3.5.2.6 GO:0008800 ... G5ELM3 N/A
    88061 5axo:A (1.39) BS02 ZN 3.5.2.6 GO:0008800 ... G5ELM3 N/A
    88062 5axp:A (1.95) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 26494583
    88063 5axp:B (1.95) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 26494583
    88064 5axq:A (1.77) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 26494583
    88065 5axq:B (1.77) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 26494583
    88066 5axr:A (2.1) BS01 ZN 3.5.2.6 GO:0008800 ... G5ELM3 N/A
    88067 5axr:A (2.1) BS02 ZN 3.5.2.6 GO:0008800 ... G5ELM3 N/A
    88068 5ay8:G (2.8) BS03 MN ? GO:0000786 ... P04908 27016736
    88069 5ay8:H (2.8) BS03 MN ? GO:0000786 ... P06899 27016736
    88070 5aya:A (2.02) BS01 ZN 3.5.2.6 GO:0008800 ... G5ELM3 N/A
    88071 5aya:A (2.02) BS02 ZN 3.5.2.6 GO:0008800 ... G5ELM3 N/A
    88072 5aym:A (3.0) BS01 FE2 ? GO:0005381 ... Q6MLJ0 26461048
    88073 5ayo:A (3.3) BS01 ZN ? GO:0005381 ... Q6MLJ0 26461048
    88074 5ayr:A (2.4) BS01 MG 3.2.2.27 GO:0004844 ... P13051 26980279
    88075 5ayr:B (2.4) BS01 MG ? GO:0046872 ... Q936H5 26980279
    88076 5ayr:C (2.4) BS01 MG 3.2.2.27 GO:0004844 ... P13051 26980279
    88077 5ayr:D (2.4) BS01 MG ? GO:0046872 ... Q936H5 26980279
    88078 5az0:A (2.2) BS01 CA N/A GO:0016491 ... N/A 27103441
    88079 5az1:A (2.3) BS01 CA N/A GO:0016491 ... N/A 27103441
    88080 5aza:A (2.08) BS03 CA ?
    2.4.99.21    		 GO:0005515 ... I6V0B8
    P0AEX9    		 26694222
    88081 5aze:H (2.2) BS01 CA N/A N/A N/A 26496237
    88082 5azu:A (1.9) BS01 CU ? GO:0005507 ... P00282 1942029
    88083 5azu:B (1.9) BS01 CU ? GO:0005507 ... P00282 1942029
    88084 5azu:C (1.9) BS01 CU ? GO:0005507 ... P00282 1942029
    88085 5azu:D (1.9) BS01 CU ? GO:0005507 ... P00282 1942029
    88086 5b0h:A (1.94) BS01 ZN ? GO:0001501 ... O14960 27334921
    88087 5b0h:B (1.94) BS01 ZN ? GO:0001501 ... O14960 27334921
    88088 5b15:A (1.39) BS01 ZN 3.5.2.6 GO:0008800 ... G5ELM3 N/A
    88089 5b15:A (1.39) BS02 ZN 3.5.2.6 GO:0008800 ... G5ELM3 N/A
    88090 5b16:A (3.2) BS03 ZN 3.1.26.3 GO:0003723 ... Q9NRR4 26748718
    88091 5b16:A (3.2) BS04 ZN 3.1.26.3 GO:0003723 ... Q9NRR4 26748718
    88092 5b1a:A (1.5) BS03 CU 7.1.1.9 GO:0004129 ... P00396 27605664
    88093 5b1a:A (1.5) BS04 MG 7.1.1.9 GO:0004129 ... P00396 27605664
    88094 5b1a:F (1.5) BS01 ZN ? GO:0005740 ... P00428 27605664
    88095 5b1a:N (1.5) BS03 CU 7.1.1.9 GO:0004129 ... P00396 27605664
    88096 5b1a:N (1.5) BS04 MG 7.1.1.9 GO:0004129 ... P00396 27605664
    88097 5b1a:S (1.5) BS01 ZN ? GO:0005740 ... P00428 27605664
    88098 5b1b:A (1.6) BS03 CU 7.1.1.9 GO:0004129 ... P00396 27605664
    88099 5b1b:A (1.6) BS04 MG 7.1.1.9 GO:0004129 ... P00396 27605664
    88100 5b1b:F (1.6) BS01 ZN ? GO:0005740 ... P00428 27605664
    88101 5b1b:N (1.6) BS03 CU 7.1.1.9 GO:0004129 ... P00396 27605664
    88102 5b1b:N (1.6) BS04 MG 7.1.1.9 GO:0004129 ... P00396 27605664
    88103 5b1b:S (1.6) BS01 ZN ? GO:0005740 ... P00428 27605664
    88104 5b1d:A (2.3) BS01 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    88105 5b1d:A (2.3) BS02 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    88106 5b1e:A (2.3) BS01 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    88107 5b1j:A (3.0) BS01 CU 1.7.2.1 GO:0005507 ... O68601 N/A
    88108 5b1j:A (3.0) BS02 CU 1.7.2.1 GO:0005507 ... O68601 N/A
    88109 5b1j:B (3.0) BS01 CU 1.7.2.1 GO:0005507 ... O68601 N/A
    88110 5b1j:B (3.0) BS02 CU 1.7.2.1 GO:0005507 ... O68601 N/A
    88111 5b1j:C (3.0) BS01 CU ? GO:0005507 ... A7VL37 N/A
    88112 5b1k:A (1.35) BS01 CU 1.7.2.1 GO:0005507 ... O68601 N/A
    88113 5b1k:A (1.35) BS02 CU 1.7.2.1 GO:0005507 ... O68601 N/A
    88114 5b1u:A (1.57) BS01 ZN 3.5.2.6 GO:0008800 ... G5ELM3 N/A
    88115 5b1u:A (1.57) BS02 ZN 3.5.2.6 GO:0008800 ... G5ELM3 N/A
    88116 5b1w:A (3.05) BS01 CA ? N/A Q9UMR7 27015765
    88117 5b1w:A (3.05) BS02 CA ? N/A Q9UMR7 27015765
    88118 5b1w:B (3.05) BS01 CA ? N/A Q9UMR7 27015765
    88119 5b1w:B (3.05) BS02 CA ? N/A Q9UMR7 27015765
    88120 5b1w:C (3.05) BS01 CA ? N/A Q9UMR7 27015765
    88121 5b1w:C (3.05) BS02 CA ? N/A Q9UMR7 27015765
    88122 5b1w:D (3.05) BS01 CA ? N/A Q9UMR7 27015765
    88123 5b1w:D (3.05) BS02 CA ? N/A Q9UMR7 27015765
    88124 5b1x:A (2.902) BS02 CA ? N/A Q9UMR7 27015765
    88125 5b1x:A (2.902) BS03 CA ? N/A Q9UMR7 27015765
    88126 5b1x:B (2.902) BS02 CA ? N/A Q9UMR7 27015765
    88127 5b1x:B (2.902) BS03 CA ? N/A Q9UMR7 27015765
    88128 5b1x:C (2.902) BS02 CA ? N/A Q9UMR7 27015765
    88129 5b1x:C (2.902) BS03 CA ? N/A Q9UMR7 27015765
    88130 5b1x:D (2.902) BS02 CA ? N/A Q9UMR7 27015765
    88131 5b1x:D (2.902) BS03 CA ? N/A Q9UMR7 27015765
    88132 5b25:A (1.9) BS01 ZN 3.1.4.17 GO:0004114 ... Q01064 26789933
    88133 5b25:B (1.9) BS01 ZN 3.1.4.17 GO:0004114 ... Q01064 26789933
    88134 5b25:C (1.9) BS01 ZN 3.1.4.17 GO:0004114 ... Q01064 26789933
    88135 5b25:D (1.9) BS02 ZN 3.1.4.17 GO:0004114 ... Q01064 26789933
    88136 5b2e:A (1.8) BS01 ZN ? GO:0016811 ... O58235 27456364
    88137 5b2e:B (1.8) BS01 ZN ? GO:0016811 ... O58235 27456364
    88138 5b2e:C (1.8) BS01 ZN ? GO:0016811 ... O58235 27456364
    88139 5b2f:A (1.9) BS01 ZN ? GO:0016811 ... O58235 27456364
    88140 5b2f:B (1.9) BS01 ZN ? GO:0016811 ... O58235 27456364
    88141 5b2f:C (1.9) BS01 ZN ? GO:0016811 ... O58235 27456364
    88142 5b2o:A (1.7) BS04 ZN 3.1.-.- GO:0003677 ... A0Q5Y3 26875867
    88143 5b2o:A (1.7) BS05 CA 3.1.-.- GO:0003677 ... A0Q5Y3 26875867
    88144 5b2o:A (1.7) BS06 CA 3.1.-.- GO:0003677 ... A0Q5Y3 26875867
    88145 5b2o:A (1.7) BS07 CA 3.1.-.- GO:0003677 ... A0Q5Y3 26875867
    88146 5b2p:A (1.7) BS04 ZN 3.1.-.- GO:0003677 ... A0Q5Y3 26875867
    88147 5b2p:A (1.7) BS05 CA 3.1.-.- GO:0003677 ... A0Q5Y3 26875867
    88148 5b2p:A (1.7) BS06 CA 3.1.-.- GO:0003677 ... A0Q5Y3 26875867
    88149 5b2p:A (1.7) BS07 CA 3.1.-.- GO:0003677 ... A0Q5Y3 26875867
    88150 5b2q:A (1.7) BS04 ZN 3.1.-.- GO:0003677 ... A0Q5Y3 26875867
    88151 5b2q:A (1.7) BS05 CA 3.1.-.- GO:0003677 ... A0Q5Y3 26875867
    88152 5b2q:A (1.7) BS06 CA 3.1.-.- GO:0003677 ... A0Q5Y3 26875867
    88153 5b2q:A (1.7) BS07 CA 3.1.-.- GO:0003677 ... A0Q5Y3 26875867
    88154 5b2z:A (1.56) BS02 CA 3.6.5.2 GO:0003924 ... P01112 27180801
    88155 5b2z:A (1.56) BS03 MG 3.6.5.2 GO:0003924 ... P01112 27180801
    88156 5b2z:A (1.56) BS04 CA 3.6.5.2 GO:0003924 ... P01112 27180801
    88157 5b30:A (1.6) BS02 CA 3.6.5.2 GO:0003924 ... P01112 27180801
    88158 5b31:A (2.2) BS03 MN ? GO:0000786 ... P68431 27358293
    88159 5b3h:C (2.7) BS01 ZN ? N/A Q700D2 28211915
    88160 5b3h:C (2.7) BS02 ZN ? N/A Q700D2 28211915
    88161 5b3h:F (2.7) BS01 ZN ? N/A Q700D2 28211915
    88162 5b3h:F (2.7) BS02 ZN ? N/A Q700D2 28211915
    88163 5b3p:A (1.652) BS01 CA 7.1.1.- GO:0008137 ... Q56219 27398308
    88164 5b3r:A (2.0) BS01 ZN 3.5.2.6 GO:0008270 ... Q5U807 27381398
    88165 5b3r:A (2.0) BS02 ZN 3.5.2.6 GO:0008270 ... Q5U807 27381398
    88166 5b3r:B (2.0) BS01 ZN 3.5.2.6 GO:0008270 ... Q5U807 27381398
    88167 5b3r:B (2.0) BS02 ZN 3.5.2.6 GO:0008270 ... Q5U807 27381398
    88168 5b3s:A (1.68) BS03 CU 7.1.1.9 GO:0004129 ... P00396 N/A
    88169 5b3s:A (1.68) BS04 MG 7.1.1.9 GO:0004129 ... P00396 N/A
    88170 5b3s:F (1.68) BS01 ZN ? GO:0005740 ... P00428 N/A
    88171 5b3s:N (1.68) BS03 CU 7.1.1.9 GO:0004129 ... P00396 N/A
    88172 5b3s:N (1.68) BS04 MG 7.1.1.9 GO:0004129 ... P00396 N/A
    88173 5b3s:S (1.68) BS01 ZN ? GO:0005740 ... P00428 N/A
    88174 5b46:B (2.1) BS03 MG 1.2.7.11 GO:0000287 ... Q96XT4 27619895
    88175 5b47:B (2.2) BS03 MG 1.2.7.11 GO:0000287 ... Q96XT4 27619895
    88176 5b48:B (2.5) BS03 MG 1.2.7.11 GO:0000287 ... Q96Y68 27619895
    88177 5b49:A (1.65) BS01 MN 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    88178 5b49:A (1.65) BS02 MN 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    88179 5b49:B (1.65) BS01 MN 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    88180 5b49:B (1.65) BS02 MN 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    88181 5b4c:A (1.96) BS01 MN 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    88182 5b4c:B (1.96) BS01 MN 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    88183 5b4e:A (2.698) BS01 ZN 2.8.1.15 GO:0000049 ... Q72LF3 28439027
    88184 5b4e:A (2.698) BS02 ZN 2.8.1.15 GO:0000049 ... Q72LF3 28439027
    88185 5b4f:A (2.75) BS01 ZN 2.8.1.15 GO:0000049 ... Q72LF3 28439027
    88186 5b4f:A (2.75) BS02 ZN 2.8.1.15 GO:0000049 ... Q72LF3 28439027
    88187 5b4k:A (2.9) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 27301679
    88188 5b4k:B (2.9) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 27301679
    88189 5b4l:A (2.4) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 27301679
    88190 5b4l:B (2.4) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 27301679
    88191 5b4x:A (3.2) BS01 CA 3.4.21.- GO:0001764 ... Q60841 N/A
    88192 5b4x:A (3.2) BS02 CA 3.4.21.- GO:0001764 ... Q60841 N/A
    88193 5b4x:A (3.2) BS03 CA 3.4.21.- GO:0001764 ... Q60841 N/A
    88194 5b4x:A (3.2) BS04 CA 3.4.21.- GO:0001764 ... Q60841 N/A
    88195 5b4x:B (3.2) BS01 CA ? GO:0005509 ... Q14114 N/A
    88196 5b4x:B (3.2) BS02 CA ? GO:0005509 ... Q14114 N/A
    88197 5b4x:B (3.2) BS03 CA ? GO:0005509 ... Q14114 N/A
    88198 5b4x:B (3.2) BS04 CA ? GO:0005509 ... Q14114 N/A
    88199 5b4x:C (3.2) BS01 CA 3.4.21.- GO:0001764 ... Q60841 N/A
    88200 5b4x:C (3.2) BS02 CA 3.4.21.- GO:0001764 ... Q60841 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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