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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    87801 5ajl:A (3.45) BS01 ZN 3.1.6.21 GO:0018741 ... Q9I5I9 N/A
    87802 5ajl:A (3.45) BS02 ZN 3.1.6.21 GO:0018741 ... Q9I5I9 N/A
    87803 5ajl:B (3.45) BS01 ZN 3.1.6.21 GO:0018741 ... Q9I5I9 N/A
    87804 5ajl:B (3.45) BS02 ZN 3.1.6.21 GO:0018741 ... Q9I5I9 N/A
    87805 5ajl:B (3.45) BS03 ZN 3.1.6.21 GO:0018741 ... Q9I5I9 N/A
    87806 5ajp:A (1.65) BS03 MN 2.4.1.41 GO:0000139 ... Q10471 25939779
    87807 5ak9:A (2.601) BS04 MN 3.1.-.- GO:0004519 ... P21505 26045557
    87808 5ak9:A (2.601) BS05 MN 3.1.-.- GO:0004519 ... P21505 26045557
    87809 5ak9:E (2.601) BS06 MN 3.1.-.- GO:0004519 ... P21505 26045557
    87810 5ak9:E (2.601) BS07 MN 3.1.-.- GO:0004519 ... P21505 26045557
    87811 5ak9:J (2.601) BS04 MN 3.1.-.- GO:0004519 ... P21505 26045557
    87812 5ak9:J (2.601) BS05 MN 3.1.-.- GO:0004519 ... P21505 26045557
    87813 5akf:A (2.45) BS05 MN 3.1.-.- GO:0004519 ... P21505 26045557
    87814 5akf:E (2.45) BS04 MN 3.1.-.- GO:0004519 ... P21505 26045557
    87815 5akf:I (2.45) BS04 MN 3.1.-.- GO:0004519 ... P21505 26045557
    87816 5akm:A (2.4) BS06 MG 3.1.-.- GO:0004519 ... P21505 26045557
    87817 5akm:F (2.4) BS06 MG 3.1.-.- GO:0004519 ... P21505 26045557
    87818 5akm:F (2.4) BS07 MG 3.1.-.- GO:0004519 ... P21505 26045557
    87819 5akm:K (2.4) BS06 MG 3.1.-.- GO:0004519 ... P21505 26045557
    87820 5akn:A (2.75) BS06 MN 3.1.-.- GO:0004519 ... P21505 26045557
    87821 5akn:A (2.75) BS07 MN 3.1.-.- GO:0004519 ... P21505 26045557
    87822 5akn:F (2.75) BS04 MN 3.1.-.- GO:0004519 ... P21505 26045557
    87823 5akn:F (2.75) BS05 MN 3.1.-.- GO:0004519 ... P21505 26045557
    87824 5akn:K (2.75) BS04 MN 3.1.-.- GO:0004519 ... P21505 26045557
    87825 5akn:K (2.75) BS05 MN 3.1.-.- GO:0004519 ... P21505 26045557
    87826 5akq:A (2.6) BS01 ZN 3.5.4.42 GO:0005737 ... O52063 26390431
    87827 5akq:B (2.6) BS01 ZN 3.5.4.42 GO:0005737 ... O52063 26390431
    87828 5akr:A (0.87) BS01 CU 1.7.2.1 GO:0005507 ... P25006 26175905
    87829 5akr:A (0.87) BS02 CU 1.7.2.1 GO:0005507 ... P25006 26175905
    87830 5aku:A (1.8) BS02 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 26183543
    87831 5aku:B (1.8) BS02 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 26183543
    87832 5akw:A (2.07) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 26183543
    87833 5akw:B (2.07) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 26183543
    87834 5al1:A (1.75) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 26183543
    87835 5al1:B (1.75) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 26183543
    87836 5al2:A (1.9) BS02 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 26183543
    87837 5al2:B (1.9) BS02 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 26183543
    87838 5al3:A (1.75) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 26183543
    87839 5al3:B (1.75) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 26183543
    87840 5al4:A (1.9) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 26183543
    87841 5al4:B (1.9) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 26183543
    87842 5al5:A (2.05) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 26183543
    87843 5al5:B (2.05) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 26183543
    87844 5al9:A (1.37) BS02 CA 1.11.1.5 GO:0004601 ... Q4Q3K2 25941976
    87845 5ala:A (2.73) BS02 CA 1.11.1.5 GO:0004601 ... Q4Q3K2 25941976
    87846 5am8:A (1.9) BS02 ZN 3.4.15.1 GO:0006508 ... P12821 26748546
    87847 5am8:B (1.9) BS02 ZN 3.4.15.1 GO:0006508 ... P12821 26748546
    87848 5am8:C (1.9) BS02 ZN 3.4.15.1 GO:0006508 ... P12821 26748546
    87849 5am8:D (1.9) BS02 ZN 3.4.15.1 GO:0006508 ... P12821 26748546
    87850 5am9:A (1.8) BS03 ZN 3.4.15.1 GO:0006508 ... P12821 26748546
    87851 5am9:B (1.8) BS03 ZN 3.4.15.1 GO:0006508 ... P12821 26748546
    87852 5am9:B (1.8) BS04 CA 3.4.15.1 GO:0006508 ... P12821 26748546
    87853 5am9:C (1.8) BS03 ZN 3.4.15.1 GO:0006508 ... P12821 26748546
    87854 5am9:C (1.8) BS04 CA 3.4.15.1 GO:0006508 ... P12821 26748546
    87855 5am9:D (1.8) BS03 ZN 3.4.15.1 GO:0006508 ... P12821 26748546
    87856 5ama:A (1.8) BS03 ZN 3.4.15.1 GO:0006508 ... P12821 26748546
    87857 5ama:B (1.8) BS03 ZN 3.4.15.1 GO:0006508 ... P12821 26748546
    87858 5ama:C (1.8) BS03 ZN 3.4.15.1 GO:0006508 ... P12821 26748546
    87859 5ama:D (1.8) BS03 ZN 3.4.15.1 GO:0006508 ... P12821 26748546
    87860 5amb:A (1.55) BS02 ZN 3.4.15.1 GO:0006508 ... P12821 26748546
    87861 5amb:B (1.55) BS02 ZN 3.4.15.1 GO:0006508 ... P12821 26748546
    87862 5amc:A (1.65) BS03 ZN 3.4.15.1 GO:0006508 ... P12821 26748546
    87863 5amc:B (1.65) BS03 ZN 3.4.15.1 GO:0006508 ... P12821 26748546
    87864 5amd:A (1.5) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25813715
    87865 5amg:A (1.55) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25813715
    87866 5amh:A (1.2) BS01 ZN ? GO:0046872 ... A4TVL0 26024445
    87867 5amh:A (1.2) BS03 CA ? GO:0046872 ... A4TVL0 26024445
    87868 5ami:A (1.75) BS01 ZN ? GO:0046872 ... A4TVL0 26024445
    87869 5ami:B (1.75) BS01 ZN ? GO:0046872 ... A4TVL0 26024445
    87870 5ami:C (1.75) BS01 ZN ? GO:0046872 ... A4TVL0 26024445
    87871 5amj:A (1.75) BS01 ZN ? GO:0046872 ... A4TVL0 26024445
    87872 5amj:B (1.75) BS01 ZN ? GO:0046872 ... A4TVL0 26024445
    87873 5amj:C (1.75) BS01 ZN ? GO:0046872 ... A4TVL0 26024445
    87874 5amk:A (2.9) BS01 ZN ? GO:0046872 ... A4TVL0 26024445
    87875 5amk:B (2.9) BS01 ZN ? GO:0046872 ... A4TVL0 26024445
    87876 5amk:C (2.9) BS01 ZN ? GO:0046872 ... A4TVL0 26024445
    87877 5amk:D (2.9) BS01 ZN ? GO:0046872 ... A4TVL0 26024445
    87878 5aml:A (1.36) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25813715
    87879 5amm:A (2.09) BS02 CA 1.11.1.5 GO:0004601 ... Q4Q3K2 26598276
    87880 5amm:B (2.09) BS02 CA 1.11.1.5 GO:0004601 ... Q4Q3K2 26598276
    87881 5amv:A (1.57) BS02 CA 4.2.2.2 GO:0005576 ... P39116 26420545
    87882 5anh:A (2.492) BS01 CU 1.10.3.2 GO:0005507 ... Q12571 N/A
    87883 5anh:A (2.492) BS02 CU 1.10.3.2 GO:0005507 ... Q12571 N/A
    87884 5anh:A (2.492) BS03 CU 1.10.3.2 GO:0005507 ... Q12571 N/A
    87885 5anh:A (2.492) BS04 CU 1.10.3.2 GO:0005507 ... Q12571 N/A
    87886 5anh:B (2.492) BS01 CU 1.10.3.2 GO:0005507 ... Q12571 N/A
    87887 5anh:B (2.492) BS02 CU 1.10.3.2 GO:0005507 ... Q12571 N/A
    87888 5anh:B (2.492) BS03 CU 1.10.3.2 GO:0005507 ... Q12571 N/A
    87889 5anh:B (2.492) BS04 CU 1.10.3.2 GO:0005507 ... Q12571 N/A
    87890 5anh:C (2.492) BS01 CU 1.10.3.2 GO:0005507 ... Q12571 N/A
    87891 5anh:C (2.492) BS02 CU 1.10.3.2 GO:0005507 ... Q12571 N/A
    87892 5anh:C (2.492) BS03 CU 1.10.3.2 GO:0005507 ... Q12571 N/A
    87893 5anh:C (2.492) BS04 CU 1.10.3.2 GO:0005507 ... Q12571 N/A
    87894 5anq:A (2.0) BS02 FE2 1.14.11.66
    1.14.11.69    		 N/A O75164 26971619
    87895 5anq:A (2.0) BS03 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 26971619
    87896 5anq:B (2.0) BS02 FE2 1.14.11.66
    1.14.11.69    		 N/A O75164 26971619
    87897 5anq:B (2.0) BS03 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 26971619
    87898 5anz:A (1.614) BS01 CA ? GO:0008933 ... Q9HX28 27035839
    87899 5ao0:A (3.731) BS01 FE 3.1.5.- N/A Q9Y3Z3 26431200
    87900 5ao0:B (3.731) BS02 FE 3.1.5.- N/A Q9Y3Z3 26431200
    87901 5ao1:A (2.545) BS01 FE 3.1.5.- N/A Q9Y3Z3 26431200
    87902 5ao1:B (2.545) BS02 FE 3.1.5.- N/A Q9Y3Z3 26431200
    87903 5ao1:C (2.545) BS01 FE 3.1.5.- N/A Q9Y3Z3 26431200
    87904 5ao1:D (2.545) BS02 FE 3.1.5.- N/A Q9Y3Z3 26431200
    87905 5ao2:A (2.966) BS01 FE 3.1.5.- N/A Q9Y3Z3 26431200
    87906 5ao2:B (2.966) BS02 FE 3.1.5.- N/A Q9Y3Z3 26431200
    87907 5ao2:C (2.966) BS01 FE 3.1.5.- N/A Q9Y3Z3 26431200
    87908 5ao2:D (2.966) BS03 FE 3.1.5.- N/A Q9Y3Z3 26431200
    87909 5ao3:A (3.004) BS01 FE 3.1.5.- N/A Q9Y3Z3 26431200
    87910 5ao3:B (3.004) BS01 FE 3.1.5.- N/A Q9Y3Z3 26431200
    87911 5ao3:C (3.004) BS02 FE 3.1.5.- N/A Q9Y3Z3 26431200
    87912 5ao3:D (3.004) BS01 FE 3.1.5.- N/A Q9Y3Z3 26431200
    87913 5ao4:A (3.7) BS01 FE 3.1.5.- N/A Q9Y3Z3 26431200
    87914 5ao4:B (3.7) BS03 FE 3.1.5.- N/A Q9Y3Z3 26431200
    87915 5ao4:C (3.7) BS01 FE 3.1.5.- N/A Q9Y3Z3 26431200
    87916 5ao4:D (3.7) BS02 FE 3.1.5.- N/A Q9Y3Z3 26431200
    87917 5ao7:A (2.09) BS01 CA ? GO:0008933 ... Q9HX28 27035839
    87918 5ao8:A (2.23) BS02 CA ? GO:0008933 ... Q9HX28 27035839
    87919 5aog:A (1.27) BS02 CA 1.11.1.7 GO:0004601 ... P84516 26666777
    87920 5aoi:A (1.78) BS01 ZN ? GO:0000976 ... P04637 26636255
    87921 5aoi:B (1.78) BS01 ZN ? GO:0000976 ... P04637 26636255
    87922 5aoj:A (1.47) BS02 ZN ? GO:0000976 ... P04637 26636255
    87923 5aoj:B (1.47) BS02 ZN ? GO:0000976 ... P04637 26636255
    87924 5aok:A (1.35) BS01 ZN ? GO:0000976 ... P04637 26636255
    87925 5aok:B (1.35) BS01 ZN ? GO:0000976 ... P04637 26636255
    87926 5aol:A (1.5) BS02 ZN ? GO:0000976 ... P04637 26636255
    87927 5aol:B (1.5) BS01 ZN ? GO:0000976 ... P04637 26636255
    87928 5aom:A (1.74) BS03 ZN ? GO:0000976 ... P04637 26636255
    87929 5aom:B (1.74) BS03 ZN ? GO:0000976 ... P04637 26636255
    87930 5ap1:A (2.05) BS02 MG 2.7.12.1 GO:0004672 ... P33981 26202014
    87931 5ap1:A (2.05) BS03 MG 2.7.12.1 GO:0004672 ... P33981 26202014
    87932 5apn:j (3.91) BS03 MG ? GO:0000448 ... P49166 26709046
    87933 5apn:j (3.91) BS04 ZN ? GO:0000448 ... P49166 26709046
    87934 5apn:m (3.91) BS02 ZN ? GO:0000027 ... P0CH08 26709046
    87935 5apn:o (3.91) BS02 ZN ? GO:0002181 ... P0CX27 26709046
    87936 5apn:p (3.91) BS02 ZN ? GO:0002181 ... P0CX25 26709046
    87937 5apn:y (3.91) BS02 ZN ? GO:0000278 ... P38344 26709046
    87938 5apn:y (3.91) BS03 ZN ? GO:0000278 ... P38344 26709046
    87939 5apo:j (3.41) BS03 ZN ? GO:0000448 ... P49166 26709046
    87940 5apo:m (3.41) BS02 ZN ? GO:0000027 ... P0CH08 26709046
    87941 5apo:o (3.41) BS02 ZN ? GO:0002181 ... P0CX27 26709046
    87942 5apo:p (3.41) BS02 ZN ? GO:0002181 ... P0CX25 26709046
    87943 5apo:y (3.41) BS02 ZN N/A GO:0003676 ... N/A 26709046
    87944 5apo:y (3.41) BS03 ZN N/A GO:0003676 ... N/A 26709046
    87945 5apw:B (1.6) BS01 CA ? GO:0003700 ... P03069 26771248
    87946 5aq6:A (1.79) BS01 ZN ? GO:0005737 ... P76344 26758285
    87947 5aq6:A (1.79) BS02 ZN ? GO:0005737 ... P76344 26758285
    87948 5aqe:A (1.1) BS02 CA 3.4.21.62 GO:0004252 ... P29600 N/A
    87949 5aqu:B (1.92) BS01 MG ? GO:0051087 ... Q99933 27708405
    87950 5ar3:A (3.23) BS02 MG 2.7.10.2
    2.7.11.1    		 GO:0004672 ... O43353 26455654
    87951 5ar3:B (3.23) BS02 MG 2.7.10.2
    2.7.11.1    		 GO:0004672 ... O43353 26455654
    87952 5arb:A (1.15) BS01 CA 3.4.21.62 GO:0004252 ... P29600 N/A
    87953 5arc:A (1.1) BS01 CA 3.4.21.62 GO:0004252 ... P29600 N/A
    87954 5ard:A (1.55) BS01 CA 3.4.21.62 GO:0004252 ... P29600 N/A
    87955 5arf:A (1.92) BS03 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 27075367
    87956 5arf:A (1.92) BS04 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 27075367
    87957 5arf:A (1.92) BS05 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 27075367
    87958 5arg:A (1.99) BS01 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 27075367
    87959 5arg:A (1.99) BS02 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 27075367
    87960 5arg:A (1.99) BS03 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 27075367
    87961 5arn:A (2.3) BS01 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    87962 5arn:A (2.3) BS02 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    87963 5arn:A (2.3) BS03 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    87964 5arn:A (2.3) BS04 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    87965 5arn:A (2.3) BS05 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    87966 5arn:A (2.3) BS06 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    87967 5arn:A (2.3) BS07 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    87968 5arn:A (2.3) BS08 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    87969 5arn:A (2.3) BS09 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    87970 5arn:A (2.3) BS10 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    87971 5arn:A (2.3) BS11 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    87972 5arn:A (2.3) BS12 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    87973 5arn:A (2.3) BS13 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    87974 5arn:A (2.3) BS14 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    87975 5arn:A (2.3) BS15 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    87976 5arn:A (2.3) BS16 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    87977 5arn:A (2.3) BS17 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    87978 5at1:B (2.6) BS01 ZN ? GO:0005515 ... P0A7F3 2271528
    87979 5at1:D (2.6) BS01 ZN ? GO:0005515 ... P0A7F3 2271528
    87980 5aum:B (2.05) BS02 ZN N/A N/A N/A N/A
    87981 5aun:A (1.63) BS01 ZN ? GO:0008270 ... Q5JIH3 26056269
    87982 5auo:A (1.8) BS01 ZN ? GO:0008270 ... Q5JIH3 26056269
    87983 5aup:A (3.102) BS01 ZN ? GO:0008270 ... Q5JIH3 26056269
    87984 5aup:H (3.102) BS01 ZN ? GO:0008270 ... Q5JIH3 26056269
    87985 5ava:A (3.0) BS02 MN ? GO:0030246 ... P05088 26971576
    87986 5ava:A (3.0) BS03 CA ? GO:0030246 ... P05088 26971576
    87987 5ava:B (3.0) BS02 MN ? GO:0030246 ... P05088 26971576
    87988 5ava:B (3.0) BS03 CA ? GO:0030246 ... P05088 26971576
    87989 5ava:C (3.0) BS03 MN ? GO:0030246 ... P05088 26971576
    87990 5ava:C (3.0) BS04 CA ? GO:0030246 ... P05088 26971576
    87991 5ava:D (3.0) BS03 MN ? GO:0030246 ... P05088 26971576
    87992 5ava:D (3.0) BS04 CA ? GO:0030246 ... P05088 26971576
    87993 5ava:E (3.0) BS02 MN ? GO:0030246 ... P05088 26971576
    87994 5ava:E (3.0) BS03 CA ? GO:0030246 ... P05088 26971576
    87995 5ava:F (3.0) BS02 MN ? GO:0030246 ... P05088 26971576
    87996 5ava:F (3.0) BS03 CA ? GO:0030246 ... P05088 26971576
    87997 5ava:G (3.0) BS02 MN ? GO:0030246 ... P05088 26971576
    87998 5ava:G (3.0) BS03 CA ? GO:0030246 ... P05088 26971576
    87999 5ava:H (3.0) BS03 MN ? GO:0030246 ... P05088 26971576
    88000 5ava:H (3.0) BS04 CA ? GO:0030246 ... P05088 26971576
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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