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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    87601 5adb:A (2.05) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 26469213
    87602 5adc:A (2.1) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 26469213
    87603 5adc:B (2.1) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 26469213
    87604 5add:A (2.1) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 26469213
    87605 5add:B (2.1) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 26469213
    87606 5ade:A (2.1) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 26469213
    87607 5ade:B (2.1) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 26469213
    87608 5adf:A (1.966) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 26469213
    87609 5adf:B (1.966) BS03 ZN 1.14.13.39 GO:0004517 ... P29475 26469213
    87610 5adg:A (1.982) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 26469213
    87611 5adg:B (1.982) BS03 ZN 1.14.13.39 GO:0004517 ... P29475 26469213
    87612 5adh:A (2.9) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 3771574
    87613 5adh:A (2.9) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 3771574
    87614 5adi:A (2.2) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 26469213
    87615 5adi:B (2.2) BS03 ZN 1.14.13.39 GO:0004517 ... P29475 26469213
    87616 5adj:A (2.217) BS04 ZN 1.14.13.39 GO:0004517 ... P29473 26469213
    87617 5adj:B (2.217) BS02 ZN 1.14.13.39 GO:0004517 ... P29473 26469213
    87618 5adk:A (1.805) BS04 ZN 1.14.13.39 GO:0004517 ... P29473 26469213
    87619 5adk:B (1.805) BS02 ZN 1.14.13.39 GO:0004517 ... P29473 26469213
    87620 5adl:A (2.205) BS04 ZN 1.14.13.39 GO:0004517 ... P29473 26469213
    87621 5adl:B (2.205) BS02 ZN 1.14.13.39 GO:0004517 ... P29473 26469213
    87622 5adm:A (2.196) BS04 ZN 1.14.13.39 GO:0004517 ... P29473 26469213
    87623 5adm:B (2.196) BS02 ZN 1.14.13.39 GO:0004517 ... P29473 26469213
    87624 5adn:A (2.0) BS04 ZN 1.14.13.39 GO:0004517 ... P29473 26469213
    87625 5adn:B (2.0) BS02 ZN 1.14.13.39 GO:0004517 ... P29473 26469213
    87626 5adq:A (2.1) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 26706174
    87627 5adr:A (2.1) BS02 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 26706174
    87628 5ads:A (1.8) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 26706174
    87629 5adt:A (2.15) BS03 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 26706174
    87630 5adu:L (1.1) BS02 NI 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    87631 5adu:L (1.1) BS03 MG 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    87632 5adu:M (1.1) BS02 NI 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    87633 5adu:M (1.1) BS03 MG 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    87634 5adv:A (2.1) BS01 FE ? GO:0006826 ... Q0P8Q4 27162326
    87635 5adv:B (2.1) BS01 FE ? GO:0006826 ... Q0P8Q4 27162326
    87636 5adv:C (2.1) BS01 FE ? GO:0006826 ... Q0P8Q4 27162326
    87637 5adw:A (1.9) BS01 FE ? GO:0006826 ... Q0P8Q4 27162326
    87638 5adw:B (1.9) BS01 FE ? GO:0006826 ... Q0P8Q4 27162326
    87639 5adw:C (1.9) BS01 FE ? GO:0006826 ... Q0P8Q4 27162326
    87640 5ady:6 (4.5) BS03 MG ? GO:0003924 ... P25519 26458047
    87641 5ae6:A (2.1) BS04 ZN 3.2.1.37 GO:0004553 ... Q92458 N/A
    87642 5ae6:A (2.1) BS05 ZN 3.2.1.37 GO:0004553 ... Q92458 N/A
    87643 5ae6:B (2.1) BS03 ZN 3.2.1.37 GO:0004553 ... Q92458 N/A
    87644 5ae6:B (2.1) BS04 ZN 3.2.1.37 GO:0004553 ... Q92458 N/A
    87645 5ae6:B (2.1) BS05 ZN 3.2.1.37 GO:0004553 ... Q92458 N/A
    87646 5aeb:A (2.1) BS01 ZN 3.5.2.6 GO:0046872 ... B5L5V5 28750094
    87647 5aeb:A (2.1) BS02 ZN 3.5.2.6 GO:0046872 ... B5L5V5 28750094
    87648 5aeb:A (2.1) BS03 CO 3.5.2.6 GO:0046872 ... B5L5V5 28750094
    87649 5aeb:B (2.1) BS01 CO 3.5.2.6 GO:0046872 ... B5L5V5 28750094
    87650 5aeb:B (2.1) BS02 ZN 3.5.2.6 GO:0046872 ... B5L5V5 28750094
    87651 5aeb:B (2.1) BS03 ZN 3.5.2.6 GO:0046872 ... B5L5V5 28750094
    87652 5aed:A (1.91) BS01 CA 3.2.1.199 GO:0003824 ... P32138 26878550
    87653 5aed:B (1.91) BS01 CA 3.2.1.199 GO:0003824 ... P32138 26878550
    87654 5aee:A (1.85) BS01 CA 3.2.1.199 GO:0003824 ... P32138 26878550
    87655 5aee:A (1.85) BS02 CA 3.2.1.199 GO:0003824 ... P32138 26878550
    87656 5aee:B (1.85) BS01 CA 3.2.1.199 GO:0003824 ... P32138 26878550
    87657 5aeg:A (1.85) BS01 CA 3.2.1.199 GO:0003824 ... P32138 26878550
    87658 5aeg:B (1.85) BS01 CA 3.2.1.199 GO:0003824 ... P32138 26878550
    87659 5aeh:A (1.85) BS02 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 26706174
    87660 5aeh:B (1.85) BS02 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 26706174
    87661 5aei:A (1.83) BS02 CA N/A N/A N/A 26878586
    87662 5aei:A (1.83) BS03 CA N/A N/A N/A 26878586
    87663 5aei:A (1.83) BS04 CA N/A N/A N/A 26878586
    87664 5aei:B (1.83) BS02 CA N/A N/A N/A 26878586
    87665 5aei:B (1.83) BS03 CA N/A N/A N/A 26878586
    87666 5aei:B (1.83) BS04 CA N/A N/A N/A 26878586
    87667 5aei:B (1.83) BS05 CA N/A N/A N/A 26878586
    87668 5aei:B (1.83) BS06 CA N/A N/A N/A 26878586
    87669 5aei:B (1.83) BS07 CA N/A N/A N/A 26878586
    87670 5aei:B (1.83) BS08 CA N/A N/A N/A 26878586
    87671 5aei:C (1.83) BS02 CA N/A N/A N/A 26878586
    87672 5aei:C (1.83) BS03 CA N/A N/A N/A 26878586
    87673 5aei:C (1.83) BS04 CA N/A N/A N/A 26878586
    87674 5aei:C (1.83) BS05 CA N/A N/A N/A 26878586
    87675 5aei:C (1.83) BS06 CA N/A N/A N/A 26878586
    87676 5aei:C (1.83) BS07 CA N/A N/A N/A 26878586
    87677 5ael:A (2.6) BS02 MG 2.5.1.10 GO:0004161 ... Q86C09 26392508
    87678 5ael:A (2.6) BS03 MG 2.5.1.10 GO:0004161 ... Q86C09 26392508
    87679 5ael:B (2.6) BS02 MG 2.5.1.10 GO:0004161 ... Q86C09 26392508
    87680 5ael:B (2.6) BS03 MG 2.5.1.10 GO:0004161 ... Q86C09 26392508
    87681 5aen:A (1.864) BS02 ZN 3.3.2.6
    3.4.11.4    		 GO:0003723 ... P09960 25625859
    87682 5aeq:A (1.95) BS01 CA ? GO:0000287 ... P62168 25979333
    87683 5aeq:A (1.95) BS02 CA ? GO:0000287 ... P62168 25979333
    87684 5aeq:A (1.95) BS03 CA ? GO:0000287 ... P62168 25979333
    87685 5aeq:B (1.95) BS01 CA ? GO:0000287 ... P62168 25979333
    87686 5aeq:B (1.95) BS02 CA ? GO:0000287 ... P62168 25979333
    87687 5aeq:B (1.95) BS03 CA ? GO:0000287 ... P62168 25979333
    87688 5aer:A (2.19) BS03 CA ? GO:0000287 ... P62168 25979333
    87689 5aer:A (2.19) BS04 CA ? GO:0000287 ... P62168 25979333
    87690 5aer:A (2.19) BS05 CA ? GO:0000287 ... P62168 25979333
    87691 5aes:A (2.751) BS01 MG 3.1.3.16
    3.1.3.74    		 GO:0000287 ... P60487 25783190
    87692 5aes:B (2.751) BS01 MG 3.1.3.16
    3.1.3.74    		 GO:0000287 ... P60487 25783190
    87693 5aeu:A (2.49) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 26953337
    87694 5aeu:C (2.49) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 26953337
    87695 5aeu:E (2.49) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 26953337
    87696 5aeu:G (2.49) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 26953337
    87697 5aew:A (1.88) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 26953337
    87698 5aew:C (1.88) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 26953337
    87699 5aew:E (1.88) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 26953337
    87700 5aew:G (1.88) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 26953337
    87701 5aew:I (1.88) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 26953337
    87702 5aew:K (1.88) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 26953337
    87703 5aew:M (1.88) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 26953337
    87704 5aew:O (1.88) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 26953337
    87705 5aew:Q (1.88) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 26953337
    87706 5aew:S (1.88) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 26953337
    87707 5aew:U (1.88) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 26953337
    87708 5aew:W (1.88) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 26953337
    87709 5af0:A (2.401) BS01 ZN ? GO:0060964 ... A0A0H5AXR2 25778731
    87710 5af0:B (2.401) BS01 ZN ? GO:0060964 ... A0A0H5AXR2 25778731
    87711 5af0:C (2.401) BS01 ZN ? GO:0060964 ... A0A0H5AXR2 25778731
    87712 5af0:D (2.401) BS01 ZN ? GO:0060964 ... A0A0H5AXR2 25778731
    87713 5afa:A (2.193) BS01 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    87714 5afa:A (2.193) BS02 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    87715 5afa:A (2.193) BS03 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    87716 5afa:A (2.193) BS04 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    87717 5afb:A (2.16) BS01 CA ? GO:0004930 ... Q9HAR2 25728924
    87718 5afi:4 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 25707802
    87719 5afi:6 (2.9) BS02 ZN ? GO:0002181 ... P0A7M9 25707802
    87720 5afp:A (2.3) BS02 CA ? GO:0000287 ... P62168 25979333
    87721 5afp:A (2.3) BS03 CA ? GO:0000287 ... P62168 25979333
    87722 5afp:A (2.3) BS04 CA ? GO:0000287 ... P62168 25979333
    87723 5afp:B (2.3) BS02 CA ? GO:0000287 ... P62168 25979333
    87724 5afp:B (2.3) BS03 CA ? GO:0000287 ... P62168 25979333
    87725 5afp:B (2.3) BS04 CA ? GO:0000287 ... P62168 25979333
    87726 5afs:A (2.22) BS01 ZN ? GO:0007155 ... C6XF58 27570147
    87727 5afx:A (2.39) BS01 MG ? GO:0004161 ... Q86C09 26392508
    87728 5afx:A (2.39) BS02 MG ? GO:0004161 ... Q86C09 26392508
    87729 5afx:A (2.39) BS03 MG ? GO:0004161 ... Q86C09 26392508
    87730 5afx:B (2.39) BS02 MG ? GO:0004161 ... Q86C09 26392508
    87731 5afx:B (2.39) BS03 MG ? GO:0004161 ... Q86C09 26392508
    87732 5ag2:A (1.77) BS01 MN 1.15.1.1 GO:0004784 ... P41977 26257399
    87733 5ag2:C (1.77) BS01 MN 1.15.1.1 GO:0004784 ... P41977 26257399
    87734 5aga:A (2.9) BS02 MG 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 26636256
    87735 5agk:A (2.0) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 25874809
    87736 5agk:B (2.0) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 25874809
    87737 5agl:A (1.94) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 25874809
    87738 5agl:B (1.94) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 25874809
    87739 5agm:A (1.84) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 25874809
    87740 5agm:B (1.84) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 25874809
    87741 5agn:A (1.95) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 25874809
    87742 5agn:B (1.95) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 25874809
    87743 5ago:A (1.902) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 25874809
    87744 5ago:B (1.902) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 25874809
    87745 5agp:A (2.1) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 25874809
    87746 5agv:B (1.93) BS03 CA 2.7.7.7 GO:0003677 ... P9WNU1 26045430
    87747 5agv:B (1.93) BS04 CA 2.7.7.7 GO:0003677 ... P9WNU1 26045430
    87748 5agv:B (1.93) BS05 CA 2.7.7.7 GO:0003677 ... P9WNU1 26045430
    87749 5ah0:A (2.5) BS01 ZN 3.1.1.3 GO:0004806 ... A0A0A0YMQ9 26490551
    87750 5ah0:B (2.5) BS01 ZN 3.1.1.3 GO:0004806 ... A0A0A0YMQ9 26490551
    87751 5ah1:A (1.2) BS01 ZN 3.1.1.3 GO:0005576 ... A5I055 26524601
    87752 5ah5:A (2.1) BS03 ZN 6.1.1.4 GO:0000166 ... B9JQP8 27713402
    87753 5ah5:B (2.1) BS02 ZN 6.1.1.4 GO:0000166 ... B9JQP8 27713402
    87754 5ahj:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26050527
    87755 5ahj:I (2.8) BS02 MG 3.4.25.1 GO:0000502 ... P25451 26050527
    87756 5ahj:K (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26050527
    87757 5ahj:V (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26050527
    87758 5ahj:Y (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26050527
    87759 5ahj:Z (2.8) BS02 MG 3.4.25.1 GO:0000502 ... P23724 26050527
    87760 5ahk:A (1.55) BS03 MG 2.2.1.6 GO:0000166 ... Q4K6F7 N/A
    87761 5ahk:B (1.55) BS04 MG 2.2.1.6 GO:0000166 ... Q4K6F7 N/A
    87762 5aho:A (2.16) BS01 ZN 3.1.-.-
    3.5.2.6    		 N/A Q9H816 26582912
    87763 5aho:A (2.16) BS02 ZN 3.1.-.-
    3.5.2.6    		 N/A Q9H816 26582912
    87764 5ahr:A (2.19) BS01 ZN 3.5.2.6 N/A Q6PJP8 26582912
    87765 5ahu:B (2.69) BS02 MG ? GO:0004659 ... Q86C09 26392508
    87766 5ahu:B (2.69) BS03 MG ? GO:0004659 ... Q86C09 26392508
    87767 5ahu:D (2.69) BS02 MG ? GO:0004659 ... Q86C09 26392508
    87768 5ahu:D (2.69) BS03 MG ? GO:0004659 ... Q86C09 26392508
    87769 5ai2:A (1.75) BS01 CD ? GO:0009055 ... P24297 27511806
    87770 5ai3:A (1.02) BS01 CD ? GO:0005506 ... P24297 27511806
    87771 5aie:A (2.8) BS01 ZN 2.3.2.27 GO:0004842 ... P34909 25914052
    87772 5aie:A (2.8) BS02 ZN 2.3.2.27 GO:0004842 ... P34909 25914052
    87773 5aij:A (1.95) BS01 ZN 3.1.6.21 GO:0018741 ... Q9I5I9 N/A
    87774 5aij:A (1.95) BS02 ZN 3.1.6.21 GO:0018741 ... Q9I5I9 N/A
    87775 5ait:A (3.4) BS01 ZN 2.3.2.27 GO:0008270 ... O88846 26148049
    87776 5ait:A (3.4) BS02 ZN 2.3.2.27 GO:0008270 ... O88846 26148049
    87777 5ait:A (3.4) BS03 ZN 2.3.2.27 GO:0008270 ... O88846 26148049
    87778 5ait:A (3.4) BS04 ZN 2.3.2.27 GO:0008270 ... O88846 26148049
    87779 5aiu:A (2.21) BS01 ZN 2.3.2.27 GO:0008270 ... O88846 26148049
    87780 5aiu:A (2.21) BS02 ZN 2.3.2.27 GO:0008270 ... O88846 26148049
    87781 5aiu:A (2.21) BS03 ZN 2.3.2.27 GO:0008270 ... O88846 26148049
    87782 5aiu:A (2.21) BS04 ZN 2.3.2.27 GO:0008270 ... O88846 26148049
    87783 5aj0:Ap (3.5) BS02 ZN ? GO:0002181 ... P61513 25957688
    87784 5aj0:Ba (3.5) BS03 ZN ? GO:0002181 ... P62854 25957688
    87785 5aj0:Bd (3.5) BS02 ZN ? GO:0002181 ... P62273 25957688
    87786 5aj3:R (3.6) BS02 ZN ? GO:0003735 ... A0A0M3KL54 25837512
    87787 5aj3:c (3.6) BS02 ZN ? GO:0003735 ... A0A0M3KL55 25837512
    87788 5aj3:p (3.6) BS02 ZN ? GO:0003735 ... Q767K8 25837512
    87789 5aj4:AR (3.8) BS02 ZN N/A GO:0003735 ... N/A 25837512
    87790 5aj4:Ac (3.8) BS02 ZN N/A GO:0003735 ... N/A 25837512
    87791 5aj4:Ap (3.8) BS02 ZN ? GO:0003735 ... Q767K8 25837512
    87792 5aj4:B5 (3.8) BS02 ZN ? GO:0003735 ... I3LTC4 25837512
    87793 5aj4:B9 (3.8) BS02 ZN N/A GO:0003735 ... N/A 25837512
    87794 5aj4:BX (3.8) BS02 MG N/A GO:0003735 ... N/A 25837512
    87795 5aj4:Be (3.8) BS02 MG N/A GO:0003735 ... N/A 25837512
    87796 5aj4:Bt (3.8) BS02 MG N/A GO:0005761 ... N/A 25837512
    87797 5aj4:Bx (3.8) BS02 ZN ? GO:0003735 ... F1RRH6 25837512
    87798 5aj9:A (2.0) BS01 CA 3.1.6.1 GO:0004065 ... P51691 30012610
    87799 5aj9:B (2.0) BS01 CA 3.1.6.1 GO:0004065 ... P51691 30012610
    87800 5aja:B (2.649) BS01 ZN ? GO:0019058 ... Q7ZB17 25856754
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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