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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 1ar1:B (2.7) BS01 CU 7.1.1.9 GO:0004129 ... P08306 9380672
    602 1ar1:B (2.7) BS02 CU 7.1.1.9 GO:0004129 ... P08306 9380672
    603 1ar4:A (1.9) BS01 MN 1.15.1.1 GO:0004784 ... P80293 N/A
    604 1ar4:B (1.9) BS01 MN 1.15.1.1 GO:0004784 ... P80293 N/A
    605 1ar5:A (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P80293 N/A
    606 1ar5:B (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P80293 N/A
    607 1arm:A (1.76) BS01 HG 3.4.17.1 GO:0004181 ... P00730 9867434
    608 1arm:A (1.76) BS02 HG 3.4.17.1 GO:0004181 ... P00730 9867434
    609 1arp:A (1.9) BS01 CA 1.11.1.7 GO:0000302 ... P28313 8289254
    610 1arp:A (1.9) BS02 CA 1.11.1.7 GO:0000302 ... P28313 8289254
    611 1aru:A (1.6) BS01 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    612 1aru:A (1.6) BS02 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    613 1arv:A (1.6) BS01 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    614 1arv:A (1.6) BS02 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    615 1arw:A (1.6) BS01 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    616 1arw:A (1.6) BS02 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    617 1arx:A (1.9) BS01 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    618 1arx:A (1.9) BS02 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    619 1ary:A (1.9) BS01 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    620 1ary:A (1.9) BS02 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    621 1as0:A (2.0) BS01 MG ? GO:0000287 ... P10824 9398294
    622 1as6:A (1.8) BS01 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    623 1as6:A (1.8) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    624 1as6:B (1.8) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    625 1as6:B (1.8) BS03 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    626 1as6:C (1.8) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    627 1as6:C (1.8) BS03 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    628 1as7:A (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    629 1as7:A (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    630 1as7:B (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    631 1as7:B (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    632 1as7:C (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    633 1as7:C (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    634 1as8:A (1.85) BS01 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    635 1as8:A (1.85) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    636 1as8:B (1.85) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    637 1as8:B (1.85) BS03 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    638 1as8:C (1.85) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    639 1as8:C (1.85) BS03 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    640 1aso:A (2.2) BS01 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    641 1aso:A (2.2) BS02 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    642 1aso:A (2.2) BS03 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    643 1aso:A (2.2) BS04 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    644 1aso:B (2.2) BS01 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    645 1aso:B (2.2) BS02 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    646 1aso:B (2.2) BS03 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    647 1aso:B (2.2) BS04 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    648 1asp:A (2.59) BS01 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    649 1asp:A (2.59) BS02 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    650 1asp:A (2.59) BS03 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    651 1asp:A (2.59) BS04 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    652 1asp:B (2.59) BS01 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    653 1asp:B (2.59) BS02 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    654 1asp:B (2.59) BS03 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    655 1asp:B (2.59) BS04 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    656 1asq:A (2.32) BS01 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    657 1asq:A (2.32) BS02 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    658 1asq:A (2.32) BS03 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    659 1asq:A (2.32) BS04 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    660 1asq:B (2.32) BS01 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    661 1asq:B (2.32) BS02 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    662 1asq:B (2.32) BS03 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    663 1asq:B (2.32) BS04 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    664 1ast:A (1.8) BS01 ZN 3.4.24.21 GO:0004222 ... P07584 1319561
    665 1at1:B (2.8) BS01 ZN ? GO:0005515 ... P0A7F3 2405902
    666 1at1:D (2.8) BS01 ZN ? GO:0005515 ... P0A7F3 2405902
    667 1atj:A (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    668 1atj:A (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    669 1atj:B (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    670 1atj:B (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    671 1atj:C (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    672 1atj:C (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    673 1atj:D (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    674 1atj:D (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    675 1atj:E (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    676 1atj:E (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    677 1atj:F (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    678 1atj:F (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    679 1atl:A (1.8) BS01 ZN 3.4.24.42 GO:0004222 ... P15167 8078901
    680 1atl:A (1.8) BS02 CA 3.4.24.42 GO:0004222 ... P15167 8078901
    681 1atl:B (1.8) BS01 ZN 3.4.24.42 GO:0004222 ... P15167 8078901
    682 1atl:B (1.8) BS02 CA 3.4.24.42 GO:0004222 ... P15167 8078901
    683 1atn:D (2.8) BS01 CA 3.1.21.1 GO:0002283 ... P00639 2395459
    684 1atn:D (2.8) BS02 CA 3.1.21.1 GO:0002283 ... P00639 2395459
    685 1atn:D (2.8) BS03 CA 3.1.21.1 GO:0002283 ... P00639 2395459
    686 1atp:E (2.2) BS02 MN 2.7.11.11 GO:0000122 ... P05132 15299527
    687 1au1:B (2.2) BS01 ZN ? GO:0002250 ... P01574 9342320
    688 1au9:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 2684274
    689 1au9:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P00782 2684274
    690 1aui:A (2.1) BS01 ZN 3.1.3.16 GO:0000082 ... Q08209 8524402
    691 1aui:A (2.1) BS02 FE 3.1.3.16 GO:0000082 ... Q08209 8524402
    692 1aui:B (2.1) BS01 CA 3.1.3.16 GO:0001569 ... P63098 8524402
    693 1aui:B (2.1) BS02 CA 3.1.3.16 GO:0001569 ... P63098 8524402
    694 1aui:B (2.1) BS03 CA 3.1.3.16 GO:0001569 ... P63098 8524402
    695 1aui:B (2.1) BS04 CA 3.1.3.16 GO:0001569 ... P63098 8524402
    696 1auk:A (2.1) BS01 MG 3.1.6.8 GO:0004065 ... P15289 9521684
    697 1aus:L (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00875 9092835
    698 1aus:M (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00875 9092835
    699 1aus:N (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00875 9092835
    700 1aus:O (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00875 9092835
    701 1aux:A (2.3) BS01 CA ? GO:0005524 ... P17599 9463376
    702 1aux:B (2.3) BS01 CA ? GO:0005524 ... P17599 9463376
    703 1av4:A (2.2) BS01 CU 1.4.3.21 GO:0005507 ... P46881 9405045
    704 1ava:A (1.9) BS01 CA 3.2.1.1 GO:0004556 ... P04063 9634702
    705 1ava:A (1.9) BS02 CA 3.2.1.1 GO:0004556 ... P04063 9634702
    706 1ava:A (1.9) BS03 CA 3.2.1.1 GO:0004556 ... P04063 9634702
    707 1ava:B (1.9) BS01 CA 3.2.1.1 GO:0004556 ... P04063 9634702
    708 1ava:B (1.9) BS02 CA 3.2.1.1 GO:0004556 ... P04063 9634702
    709 1ava:B (1.9) BS03 CA 3.2.1.1 GO:0004556 ... P04063 9634702
    710 1avc:A (2.9) BS01 CA ? GO:0001725 ... P79134 9748523
    711 1avc:A (2.9) BS02 CA ? GO:0001725 ... P79134 9748523
    712 1avc:A (2.9) BS03 CA ? GO:0001725 ... P79134 9748523
    713 1avc:A (2.9) BS04 CA ? GO:0001725 ... P79134 9748523
    714 1avc:A (2.9) BS05 CA ? GO:0001725 ... P79134 9748523
    715 1avc:A (2.9) BS06 CA ? GO:0001725 ... P79134 9748523
    716 1avh:A (2.3) BS01 CA ? GO:0001786 ... P08758 1311770
    717 1avh:A (2.3) BS02 CA ? GO:0001786 ... P08758 1311770
    718 1avh:A (2.3) BS03 CA ? GO:0001786 ... P08758 1311770
    719 1avh:B (2.3) BS01 CA ? GO:0001786 ... P08758 1311770
    720 1avh:B (2.3) BS02 CA ? GO:0001786 ... P08758 1311770
    721 1avl:A (2.8) BS01 CU 1.4.3.21 GO:0005507 ... P46881 9405045
    722 1avm:A (1.55) BS01 FE 1.15.1.1 GO:0004784 ... P80293 N/A
    723 1avm:B (1.55) BS01 FE 1.15.1.1 GO:0004784 ... P80293 N/A
    724 1avn:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 9265618
    725 1avr:A (2.3) BS01 CA ? GO:0001786 ... P08758 1311770
    726 1avr:A (2.3) BS02 CA ? GO:0001786 ... P08758 1311770
    727 1avr:A (2.3) BS03 CA ? GO:0001786 ... P08758 1311770
    728 1avr:A (2.3) BS04 CA ? GO:0001786 ... P08758 1311770
    729 1avr:A (2.3) BS05 CA ? GO:0001786 ... P08758 1311770
    730 1avs:A (1.75) BS01 CA ? GO:0005509 ... P02588 9367759
    731 1avs:A (1.75) BS02 CA ? GO:0005509 ... P02588 9367759
    732 1avs:B (1.75) BS01 CA ? GO:0005509 ... P02588 9367759
    733 1avs:B (1.75) BS02 CA ? GO:0005509 ... P02588 9367759
    734 1avw:A (1.75) BS01 CA 3.4.21.4 GO:0004252 ... P00761 9466914
    735 1avx:A (1.9) BS01 CA 3.4.21.4 GO:0004252 ... P00761 9466914
    736 1aw5:A (2.3) BS01 ZN 4.2.1.24 GO:0004655 ... P05373 9406553
    737 1aw6:A (-1.00) BS01 CD ? GO:0000981 ... P04386 9460244
    738 1aw6:A (-1.00) BS02 CD ? GO:0000981 ... P04386 9460244
    739 1awb:A (2.5) BS01 CA 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 N/A
    740 1awb:A (2.5) BS02 CA 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 N/A
    741 1awb:B (2.5) BS01 CA 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 N/A
    742 1awb:B (2.5) BS02 CA 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 N/A
    743 1ax0:A (1.9) BS01 MN ? GO:0030246 ... P16404 9545381
    744 1ax0:A (1.9) BS02 CA ? GO:0030246 ... P16404 9545381
    745 1ax1:A (1.95) BS03 MN ? GO:0030246 ... P16404 9545381
    746 1ax1:A (1.95) BS04 CA ? GO:0030246 ... P16404 9545381
    747 1ax2:A (1.95) BS02 MN ? GO:0030246 ... P16404 9545381
    748 1ax2:A (1.95) BS03 CA ? GO:0030246 ... P16404 9545381
    749 1axe:A (2.0) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9371755
    750 1axe:A (2.0) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9371755
    751 1axe:B (2.0) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9371755
    752 1axe:B (2.0) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9371755
    753 1axg:A (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9371755
    754 1axg:A (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9371755
    755 1axg:B (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9371755
    756 1axg:B (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9371755
    757 1axg:C (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9371755
    758 1axg:C (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9371755
    759 1axg:D (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9371755
    760 1axg:D (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9371755
    761 1axk:A (2.1) BS01 CA 3.2.1.73
    3.2.1.8    		 GO:0004553 ... P18429
    P23904    		 9618460
    762 1axk:B (2.1) BS01 CA 3.2.1.73
    3.2.1.8    		 GO:0004553 ... P18429
    P23904    		 9618460
    763 1axn:A (1.78) BS01 CA ? GO:0001786 ... P12429 8639653
    764 1axn:A (1.78) BS02 CA ? GO:0001786 ... P12429 8639653
    765 1axn:A (1.78) BS03 CA ? GO:0001786 ... P12429 8639653
    766 1axn:A (1.78) BS04 CA ? GO:0001786 ... P12429 8639653
    767 1axn:A (1.78) BS05 CA ? GO:0001786 ... P12429 8639653
    768 1axy:A (1.95) BS01 MN ? GO:0030246 ... P16404 9545381
    769 1axy:A (1.95) BS02 CA ? GO:0030246 ... P16404 9545381
    770 1axz:A (1.95) BS03 MN ? GO:0030246 ... P16404 9545381
    771 1axz:A (1.95) BS04 CA ? GO:0030246 ... P16404 9545381
    772 1ay0:A (2.6) BS01 CA 2.2.1.1 GO:0003824 ... P23254 9398292
    773 1ay0:B (2.6) BS02 CA 2.2.1.1 GO:0003824 ... P23254 9398292
    774 1aye:A (1.8) BS01 ZN 3.4.17.15 GO:0004180 ... P48052 9384570
    775 1ayk:A (-1.00) BS01 ZN 3.4.24.7 GO:0004222 ... P03956 9484219
    776 1ayk:A (-1.00) BS02 ZN 3.4.24.7 GO:0004222 ... P03956 9484219
    777 1ayk:A (-1.00) BS03 CA 3.4.24.7 GO:0004222 ... P03956 9484219
    778 1ayo:B (1.9) BS01 CA ? GO:0005576 ... Q7SIH1 9634697
    779 1ayp:A (2.57) BS01 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    780 1ayp:A (2.57) BS02 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    781 1ayp:B (2.57) BS01 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    782 1ayp:B (2.57) BS02 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    783 1ayp:C (2.57) BS01 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    784 1ayp:C (2.57) BS02 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    785 1ayp:D (2.57) BS01 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    786 1ayp:D (2.57) BS02 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    787 1ayp:E (2.57) BS01 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    788 1ayp:E (2.57) BS02 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    789 1ayp:F (2.57) BS01 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    790 1ayp:F (2.57) BS02 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    791 1az0:A (2.0) BS03 CA 3.1.21.4 GO:0003677 ... P04390 9367757
    792 1az0:B (2.0) BS03 CA 3.1.21.4 GO:0003677 ... P04390 9367757
    793 1azb:A (2.2) BS01 CU ? GO:0005507 ... P00280 15299522
    794 1azb:B (2.2) BS01 CU ? GO:0005507 ... P00280 15299522
    795 1azc:A (1.8) BS01 CU ? GO:0005507 ... P00280 15299522
    796 1azc:B (1.8) BS01 CU ? GO:0005507 ... P00280 15299522
    797 1azd:A (3.0) BS01 CA ? GO:0005537 ... P55915 9094437
    798 1azd:A (3.0) BS02 MN ? GO:0005537 ... P55915 9094437
    799 1azd:B (3.0) BS01 CA ? GO:0005537 ... P55915 9094437
    800 1azd:B (3.0) BS02 MN ? GO:0005537 ... P55915 9094437
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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