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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7001 1jqg:A (2.5) BS01 ZN 3.4.17.1 GO:0004181 ... O97389 11676544
    7002 1jqk:A (2.8) BS01 FE2 1.2.7.4 GO:0003824 ... P31896 11593006
    7003 1jqk:B (2.8) BS02 FE2 1.2.7.4 GO:0003824 ... P31896 11593006
    7004 1jqk:C (2.8) BS01 FE2 1.2.7.4 GO:0003824 ... P31896 11593006
    7005 1jqk:D (2.8) BS02 FE2 1.2.7.4 GO:0003824 ... P31896 11593006
    7006 1jqk:E (2.8) BS01 FE2 1.2.7.4 GO:0003824 ... P31896 11593006
    7007 1jqk:F (2.8) BS02 FE2 1.2.7.4 GO:0003824 ... P31896 11593006
    7008 1jqn:A (2.35) BS01 MN 4.1.1.31 GO:0000287 ... P00864 12467579
    7009 1jqv:A (2.1) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    7010 1jqv:B (2.1) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    7011 1jqw:A (2.3) BS01 ZN 4.4.1.21 GO:0005506 ... O34667 11601850
    7012 1jqx:A (1.7) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    7013 1jqx:B (1.7) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    7014 1jr3:A (2.7) BS01 ZN 2.7.7.7 GO:0003677 ... P06710 11525729
    7015 1jr3:B (2.7) BS01 ZN 2.7.7.7 GO:0003677 ... P06710 11525729
    7016 1jr3:C (2.7) BS01 ZN 2.7.7.7 GO:0003677 ... P06710 11525729
    7017 1jr3:E (2.7) BS01 ZN 2.7.7.7 GO:0003677 ... P28631 11525729
    7018 1jr4:A (2.63) BS01 MG 2.1.1.6 GO:0000287 ... P22734 12404486
    7019 1jr7:A (2.0) BS01 FE2 1.14.11.64 GO:0005506 ... P76621 11910018
    7020 1jr9:A (2.8) BS01 MN 1.15.1.1 GO:0004784 ... Q7SIC3 12457847
    7021 1jrf:A (-1.00) BS01 CA ? N/A P98162 11861852
    7022 1jro:B (2.7) BS01 CA 1.1.1.204 GO:0005506 ... O54051 11796116
    7023 1jro:D (2.7) BS01 CA 1.1.1.204 GO:0005506 ... O54051 11796116
    7024 1jro:F (2.7) BS01 CA 1.1.1.204 GO:0005506 ... O54051 11796116
    7025 1jro:H (2.7) BS01 CA 1.1.1.204 GO:0005506 ... O54051 11796116
    7026 1jrp:B (3.0) BS01 CA 1.1.1.204 GO:0005506 ... O54051 11796116
    7027 1jrp:D (3.0) BS01 CA 1.1.1.204 GO:0005506 ... O54051 11796116
    7028 1jrp:F (3.0) BS01 CA 1.1.1.204 GO:0005506 ... O54051 11796116
    7029 1jrp:H (3.0) BS01 CA 1.1.1.204 GO:0005506 ... O54051 11796116
    7030 1jrq:A (2.15) BS01 CU 1.4.3.21 GO:0005507 ... P46883 11669617
    7031 1jrq:A (2.15) BS02 CA 1.4.3.21 GO:0005507 ... P46883 11669617
    7032 1jrq:A (2.15) BS03 CA 1.4.3.21 GO:0005507 ... P46883 11669617
    7033 1jrq:B (2.15) BS01 CU 1.4.3.21 GO:0005507 ... P46883 11669617
    7034 1jrq:B (2.15) BS02 CA 1.4.3.21 GO:0005507 ... P46883 11669617
    7035 1jrq:B (2.15) BS03 CA 1.4.3.21 GO:0005507 ... P46883 11669617
    7036 1jrs:A (1.8) BS02 CA 3.4.21.4 GO:0004175 ... P00760 8845765
    7037 1jrt:A (1.7) BS02 CA 3.4.21.4 GO:0004175 ... P00760 8845765
    7038 1js4:A (2.0) BS04 CA 3.2.1.4 GO:0004553 ... P26221 9334746
    7039 1js4:A (2.0) BS05 CA 3.2.1.4 GO:0004553 ... P26221 9334746
    7040 1js4:B (2.0) BS04 CA 3.2.1.4 GO:0004553 ... P26221 9334746
    7041 1js4:B (2.0) BS05 CA 3.2.1.4 GO:0004553 ... P26221 9334746
    7042 1jsa:A (-1.00) BS01 CA ? GO:0001750 ... P21457 9296500
    7043 1jsa:A (-1.00) BS02 CA ? GO:0001750 ... P21457 9296500
    7044 1jsc:A (2.6) BS01 MG 2.2.1.6 GO:0000287 ... P07342 11902841
    7045 1jsc:B (2.6) BS02 MG 2.2.1.6 GO:0000287 ... P07342 11902841
    7046 1jst:A (2.6) BS01 MN 2.7.11.22 GO:0000082 ... P24941 8756328
    7047 1jst:C (2.6) BS01 MN 2.7.11.22 GO:0000082 ... P24941 8756328
    7048 1jt1:A (1.78) BS01 ZN 3.5.2.6 N/A Q9K578 12507470
    7049 1jt1:A (1.78) BS02 ZN 3.5.2.6 N/A Q9K578 12507470
    7050 1jtd:B (2.3) BS01 CA ? GO:0005737 ... O87916 11573088
    7051 1jtd:B (2.3) BS02 CA ? GO:0005737 ... O87916 11573088
    7052 1jtg:B (1.73) BS01 CA ? GO:0005515 ... P35804 11573088
    7053 1jtg:D (1.73) BS01 CA ? GO:0005515 ... P35804 11573088
    7054 1jtk:A (2.04) BS01 ZN 3.5.4.5 GO:0003824 ... P19079 11851403
    7055 1jtk:B (2.04) BS01 ZN 3.5.4.5 GO:0003824 ... P19079 11851403
    7056 1ju9:A (2.0) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 11601993
    7057 1ju9:A (2.0) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 11601993
    7058 1ju9:B (2.0) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 11601993
    7059 1ju9:B (2.0) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 11601993
    7060 1jub:A (1.4) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    7061 1jub:B (1.4) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    7062 1jue:A (1.8) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    7063 1jue:B (1.8) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    7064 1jug:A (1.9) BS01 CA 3.2.1.17 GO:0003796 ... P37156 15299900
    7065 1juh:A (1.6) BS01 CU 1.13.11.24 GO:0008127 ... Q7SIC2 11839311
    7066 1juh:B (1.6) BS01 CU 1.13.11.24 GO:0008127 ... Q7SIC2 11839311
    7067 1juh:C (1.6) BS01 CU 1.13.11.24 GO:0008127 ... Q7SIC2 11839311
    7068 1juh:D (1.6) BS01 CU 1.13.11.24 GO:0008127 ... Q7SIC2 11839311
    7069 1jui:A (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    7070 1jui:A (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    7071 1jui:B (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    7072 1jui:B (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    7073 1jui:C (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    7074 1jui:C (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    7075 1jui:D (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    7076 1jui:D (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    7077 1juy:A (2.5) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 8961938
    7078 1jv0:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 12009884
    7079 1jv0:A (2.0) BS02 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 12009884
    7080 1jv0:B (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 12009884
    7081 1jv0:B (2.0) BS02 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 12009884
    7082 1jv2:A (3.1) BS01 CA ? GO:0001525 ... P06756 11546839
    7083 1jv2:A (3.1) BS02 CA ? GO:0001525 ... P06756 11546839
    7084 1jv2:A (3.1) BS03 CA ? GO:0001525 ... P06756 11546839
    7085 1jv2:A (3.1) BS04 CA ? GO:0001525 ... P06756 11546839
    7086 1jv2:A (3.1) BS05 CA ? GO:0001525 ... P06756 11546839
    7087 1jv2:B (3.1) BS01 CA ? GO:0001618 ... P05106 11546839
    7088 1jvb:A (1.85) BS01 ZN 1.1.1.1 GO:0004022 ... P39462 12051852
    7089 1jvb:A (1.85) BS02 ZN 1.1.1.1 GO:0004022 ... P39462 12051852
    7090 1jvi:A (2.2) BS01 ZN 4.4.1.21 GO:0005506 ... O34667 11601850
    7091 1jvl:A (2.0) BS01 CU ? GO:0005507 ... P00282 11740504
    7092 1jvl:B (2.0) BS01 CU ? GO:0005507 ... P00282 11740504
    7093 1jvo:A (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    7094 1jvo:B (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    7095 1jvo:C (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    7096 1jvo:D (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    7097 1jvo:E (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    7098 1jvo:F (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    7099 1jvo:G (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    7100 1jvo:H (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    7101 1jvo:I (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    7102 1jvo:J (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    7103 1jvo:K (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    7104 1jvo:L (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    7105 1jw1:A (4.0) BS01 FE 3.4.21.- GO:0001503 ... Q29477 N/A
    7106 1jw1:A (4.0) BS02 FE 3.4.21.- GO:0001503 ... Q29477 N/A
    7107 1jw6:A (1.93) BS02 MN ? GO:0030246 ... P02866 11732694
    7108 1jw6:A (1.93) BS03 CA ? GO:0030246 ... P02866 11732694
    7109 1jw9:B (1.7) BS01 ZN 2.7.7.80 GO:0004792 ... P12282 11713534
    7110 1jwb:B (2.1) BS01 ZN 2.7.7.80 GO:0004792 ... P12282 11713534
    7111 1jwh:C (3.1) BS01 ZN ? GO:0000785 ... P67870 11574463
    7112 1jwh:D (3.1) BS01 ZN ? GO:0000785 ... P67870 11574463
    7113 1jwq:A (1.8) BS01 ZN 3.5.1.28 GO:0008745 ... Q9LCR3 N/A
    7114 1jwy:A (2.3) BS02 MG ? GO:0003774 ... P08799
    Q94464
    11689422
    7115 1jx2:A (2.3) BS02 MG ? GO:0003774 ... P08799
    Q94464
    11689422
    7116 1jx4:A (1.7) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 11595188
    7117 1jx4:A (1.7) BS04 MG 2.7.7.7 GO:0000287 ... Q97W02 11595188
    7118 1jx9:B (2.28) BS01 CA 3.5.1.11 GO:0016787 ... P06875 15254299
    7119 1jxd:A (-1.00) BS01 CU ? GO:0005507 ... P21697 11509552
    7120 1jxf:A (-1.00) BS01 CU ? GO:0005507 ... P21697 11509552
    7121 1jxg:A (1.6) BS01 CU1 ? GO:0005507 ... P00299 11679761
    7122 1jxg:B (1.6) BS01 CU1 ? GO:0005507 ... P00299 11679761
    7123 1jxj:A (1.99) BS01 CA 3.2.1.1 GO:0003824 ... P0DUB6 15182367
    7124 1jxk:A (1.9) BS01 CA 3.2.1.1 GO:0003824 ... P0DUB6 12527308
    7125 1jxl:A (2.1) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 11595188
    7126 1jxl:A (2.1) BS04 MG 2.7.7.7 GO:0000287 ... Q97W02 11595188
    7127 1jxl:A (2.1) BS05 MG 2.7.7.7 GO:0000287 ... Q97W02 11595188
    7128 1jxl:A (2.1) BS06 MG 2.7.7.7 GO:0000287 ... Q97W02 11595188
    7129 1jxn:A (2.3) BS02 MN ? GO:0030246 ... P22972 N/A
    7130 1jxn:A (2.3) BS03 CA ? GO:0030246 ... P22972 N/A
    7131 1jxn:B (2.3) BS02 MN ? GO:0030246 ... P22972 N/A
    7132 1jxn:B (2.3) BS03 CA ? GO:0030246 ... P22972 N/A
    7133 1jxn:C (2.3) BS02 MN ? GO:0030246 ... P22972 N/A
    7134 1jxn:C (2.3) BS03 CA ? GO:0030246 ... P22972 N/A
    7135 1jxn:D (2.3) BS02 MN ? GO:0030246 ... P22972 N/A
    7136 1jxn:D (2.3) BS03 CA ? GO:0030246 ... P22972 N/A
    7137 1jxp:A (2.2) BS02 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P26663 9568891
    7138 1jxp:B (2.2) BS02 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P26663 9568891
    7139 1jxz:A (1.9) BS01 CA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    7140 1jxz:B (1.9) BS02 CA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    7141 1jxz:C (1.9) BS01 CA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    7142 1jy8:A (2.5) BS01 ZN 4.6.1.12 GO:0005515 ... P62617 11829504
    7143 1jyb:A (2.2) BS01 FE ? GO:0005506 ... P24931 12459910
    7144 1jyb:A (2.2) BS02 FE ? GO:0005506 ... P24931 12459910
    7145 1jyb:A (2.2) BS03 ZN ? GO:0005506 ... P24931 12459910
    7146 1jyc:A (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    7147 1jyc:A (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    7148 1jyc:B (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    7149 1jyc:B (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    7150 1jyc:C (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    7151 1jyc:C (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    7152 1jyc:D (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    7153 1jyc:D (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    7154 1jyi:A (2.75) BS02 MN ? GO:0005537 ... P55915 10821862
    7155 1jyi:A (2.75) BS03 CA ? GO:0005537 ... P55915 10821862
    7156 1jyi:B (2.75) BS02 MN ? GO:0005537 ... P55915 10821862
    7157 1jyi:B (2.75) BS03 CA ? GO:0005537 ... P55915 10821862
    7158 1jyi:C (2.75) BS02 MN ? GO:0005537 ... P55915 10821862
    7159 1jyi:C (2.75) BS03 CA ? GO:0005537 ... P55915 10821862
    7160 1jyi:D (2.75) BS02 MN ? GO:0005537 ... P55915 10821862
    7161 1jyi:D (2.75) BS03 CA ? GO:0005537 ... P55915 10821862
    7162 1jyl:A (2.4) BS01 MG 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    7163 1jyl:B (2.4) BS01 MG 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    7164 1jyl:C (2.4) BS01 MG 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    7165 1jyl:D (2.4) BS01 MG 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    7166 1jym:A (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    7167 1jym:B (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    7168 1jym:C (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    7169 1jym:D (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    7170 1jym:E (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    7171 1jym:F (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    7172 1jym:G (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    7173 1jym:H (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    7174 1jym:I (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    7175 1jym:J (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    7176 1jyn:A (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7177 1jyn:A (1.8) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7178 1jyn:A (1.8) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7179 1jyn:A (1.8) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7180 1jyn:A (1.8) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7181 1jyn:A (1.8) BS08 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7182 1jyn:B (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7183 1jyn:B (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7184 1jyn:B (1.8) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7185 1jyn:B (1.8) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7186 1jyn:B (1.8) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7187 1jyn:B (1.8) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7188 1jyn:C (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7189 1jyn:C (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7190 1jyn:C (1.8) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7191 1jyn:C (1.8) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7192 1jyn:C (1.8) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7193 1jyn:C (1.8) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7194 1jyn:D (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7195 1jyn:D (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7196 1jyn:D (1.8) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7197 1jyn:D (1.8) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7198 1jyn:D (1.8) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    7199 1jyv:A (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    7200 1jyv:A (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218