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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6001 1ilu:M (2.3) BS01 CU ? GO:0005507 ... P00282 8568881
    6002 1im5:A (1.65) BS01 ZN 3.5.1.19 GO:0016787 ... O58727 11714269
    6003 1imc:A (2.6) BS01 MN 3.1.3.25
    3.1.3.94
    GO:0000287 ... P29218 8068621
    6004 1imc:A (2.6) BS02 MN 3.1.3.25
    3.1.3.94
    GO:0000287 ... P29218 8068621
    6005 1imc:B (2.6) BS01 MN 3.1.3.25
    3.1.3.94
    GO:0000287 ... P29218 8068621
    6006 1imc:B (2.6) BS02 MN 3.1.3.25
    3.1.3.94
    GO:0000287 ... P29218 8068621
    6007 1imc:B (2.6) BS03 MN 3.1.3.25
    3.1.3.94
    GO:0000287 ... P29218 8068621
    6008 1imd:A (2.6) BS01 MN 3.1.3.25
    3.1.3.94
    GO:0000287 ... P29218 8068621
    6009 1imd:A (2.6) BS02 MN 3.1.3.25
    3.1.3.94
    GO:0000287 ... P29218 8068621
    6010 1imd:B (2.6) BS01 MN 3.1.3.25
    3.1.3.94
    GO:0000287 ... P29218 8068621
    6011 1imd:B (2.6) BS02 MN 3.1.3.25
    3.1.3.94
    GO:0000287 ... P29218 8068621
    6012 1ime:A (2.25) BS01 CA 3.1.3.25
    3.1.3.94
    GO:0000287 ... P29218 8068621
    6013 1ime:B (2.25) BS01 CA 3.1.3.25
    3.1.3.94
    GO:0000287 ... P29218 8068621
    6014 1ime:B (2.25) BS02 CA 3.1.3.25
    3.1.3.94
    GO:0000287 ... P29218 8068621
    6015 1iml:A (-1.00) BS01 ZN ? GO:0005737 ... P63255 8632452
    6016 1iml:A (-1.00) BS02 ZN ? GO:0005737 ... P63255 8632452
    6017 1in0:B (2.14) BS01 HG ? GO:0000166 ... P44096 12943362
    6018 1inc:A (1.94) BS01 CA 3.4.21.36 GO:0004252 ... P00772 3430613
    6019 1inf:A (2.4) BS01 CA 3.2.1.18 GO:0004308 ... P03474 7650674
    6020 1ing:A (2.4) BS01 CA 3.2.1.18 GO:0004308 ... P06820 7650674
    6021 1ing:B (2.4) BS02 CA 3.2.1.18 GO:0004308 ... P06820 7650674
    6022 1inh:A (2.4) BS02 CA 3.2.1.18 GO:0004308 ... P06820 7650674
    6023 1inh:B (2.4) BS04 CA 3.2.1.18 GO:0004308 ... P06820 7650674
    6024 1inn:A (1.8) BS01 ZN 4.4.1.21 GO:0005506 ... Q9RRU8 11435117
    6025 1inn:B (1.8) BS01 ZN 4.4.1.21 GO:0005506 ... Q9RRU8 11435117
    6026 1ino:A (2.2) BS01 MN 3.6.1.1 GO:0000287 ... P0A7A9 8543015
    6027 1inp:A (2.3) BS01 MG 3.1.3.57 GO:0004441 ... P21327 7947723
    6028 1inv:A (2.4) BS01 CA 3.2.1.18 GO:0004308 ... P03474 7844831
    6029 1inw:A (2.4) BS02 CA 3.2.1.18 GO:0004308 ... P06820 7844831
    6030 1inx:A (2.4) BS01 CA 3.2.1.18 GO:0004308 ... P06820 7844831
    6031 1iny:A (2.4) BS01 CA 3.2.1.18 GO:0004308 ... P03472 7844831
    6032 1io0:A (1.45) BS01 ZN ? GO:0005523 ... Q9DEA6 12414704
    6033 1iod:A (2.3) BS01 CA ? GO:0005576 ... Q9IAM1 11404471
    6034 1iod:A (2.3) BS02 CA ? GO:0005576 ... Q9IAM1 11404471
    6035 1iod:B (2.3) BS01 CA ? GO:0005576 ... Q9DEF8 11404471
    6036 1iod:G (2.3) BS01 CA 3.4.21.6 GO:0005509 ... P00743 11404471
    6037 1iod:G (2.3) BS02 CA 3.4.21.6 GO:0005509 ... P00743 11404471
    6038 1iod:G (2.3) BS03 CA 3.4.21.6 GO:0005509 ... P00743 11404471
    6039 1iod:G (2.3) BS04 CA 3.4.21.6 GO:0005509 ... P00743 11404471
    6040 1iod:G (2.3) BS05 CA 3.4.21.6 GO:0005509 ... P00743 11404471
    6041 1iod:G (2.3) BS06 CA 3.4.21.6 GO:0005509 ... P00743 11404471
    6042 1iod:G (2.3) BS07 CA 3.4.21.6 GO:0005509 ... P00743 11404471
    6043 1ioe:A (2.9) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    6044 1iov:A (2.2) BS01 MG 6.3.2.4 GO:0003824 ... P07862 9054558
    6045 1iov:A (2.2) BS02 MG 6.3.2.4 GO:0003824 ... P07862 9054558
    6046 1iov:A (2.2) BS03 MG 6.3.2.4 GO:0003824 ... P07862 9054558
    6047 1iow:A (1.9) BS01 MG 6.3.2.4 GO:0003824 ... P07862 9054558
    6048 1iow:A (1.9) BS02 MG 6.3.2.4 GO:0003824 ... P07862 9054558
    6049 1ips:A (2.5) BS01 MN 1.21.3.1 GO:0005506 ... P05326 7791906
    6050 1ips:A (2.5) BS02 MN 1.21.3.1 GO:0005506 ... P05326 7791906
    6051 1ips:B (2.5) BS01 MN 1.21.3.1 GO:0005506 ... P05326 7791906
    6052 1ipw:A (2.3) BS01 MG 3.6.1.1 GO:0000287 ... P0A7A9 8664256
    6053 1ipw:B (2.3) BS01 MG 3.6.1.1 GO:0000287 ... P0A7A9 8664256
    6054 1iq3:A (-1.00) BS01 CA ? GO:0005509 ... Q8NFH8 9928989
    6055 1iq5:A (1.8) BS02 CA ? GO:0005102 ... P0DP33 11545585
    6056 1iq5:A (1.8) BS03 CA ? GO:0005102 ... P0DP33 11545585
    6057 1iq5:A (1.8) BS04 CA ? GO:0005102 ... P0DP33 11545585
    6058 1iq5:A (1.8) BS05 CA ? GO:0005102 ... P0DP33 11545585
    6059 1iq8:A (2.2) BS01 ZN 2.4.2.48 GO:0002099 ... O58843 12054814
    6060 1iq8:A (2.2) BS02 MG 2.4.2.48 GO:0002099 ... O58843 12054814
    6061 1iq8:B (2.2) BS01 ZN 2.4.2.48 GO:0002099 ... O58843 12054814
    6062 1iq8:B (2.2) BS02 MG 2.4.2.48 GO:0002099 ... O58843 12054814
    6063 1iqc:A (1.8) BS01 CA 1.11.1.5 GO:0004130 ... P55929 11695895
    6064 1iqc:A (1.8) BS02 CA 1.11.1.5 GO:0004130 ... P55929 11695895
    6065 1iqc:B (1.8) BS01 CA 1.11.1.5 GO:0004130 ... P55929 11695895
    6066 1iqc:C (1.8) BS01 CA 1.11.1.5 GO:0004130 ... P55929 11695895
    6067 1iqc:D (1.8) BS01 CA 1.11.1.5 GO:0004130 ... P55929 11695895
    6068 1iqe:A (2.9) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    6069 1iqf:A (3.2) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    6070 1iqg:A (2.6) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    6071 1iqh:A (3.0) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    6072 1iqi:A (2.9) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    6073 1iqj:A (3.0) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    6074 1iqk:A (3.2) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    6075 1iql:A (2.7) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    6076 1iqm:A (2.6) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    6077 1iqn:A (2.6) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    6078 1iqx:A (2.0) BS01 CO 1.4.3.21 GO:0005507 ... P46881 12537504
    6079 1iqx:B (2.0) BS01 CO 1.4.3.21 GO:0005507 ... P46881 12537504
    6080 1ir1:A (1.8) BS01 MG 4.1.1.39 GO:0000287 ... P00875 11866526
    6081 1ir1:B (1.8) BS01 MG 4.1.1.39 GO:0000287 ... P00875 11866526
    6082 1ir1:C (1.8) BS01 MG 4.1.1.39 GO:0000287 ... P00875 11866526
    6083 1ir1:D (1.8) BS01 MG 4.1.1.39 GO:0000287 ... P00875 11866526
    6084 1ir2:A (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    6085 1ir2:B (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    6086 1ir2:C (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    6087 1ir2:D (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    6088 1ir2:E (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    6089 1ir2:F (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    6090 1ir2:G (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    6091 1ir2:H (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    6092 1ir2:S (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    6093 1ir2:T (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    6094 1ir2:U (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    6095 1ir2:V (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    6096 1ir2:W (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    6097 1ir2:X (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    6098 1ir2:Y (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    6099 1ir2:Z (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    6100 1ir3:A (1.9) BS02 MG 2.7.10.1 GO:0004672 ... P06213 9312016
    6101 1ir6:A (2.9) BS01 MN 3.1.-.- GO:0003676 ... Q5SJ47 11972066
    6102 1irb:A (1.9) BS01 CA 3.1.1.4 GO:0002227 ... P00593 8810924
    6103 1ire:A (1.8) BS01 CO 4.2.1.84 GO:0003824 ... Q7SID2 11700034
    6104 1irj:A (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    6105 1irj:A (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    6106 1irj:B (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    6107 1irj:B (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    6108 1irj:C (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    6109 1irj:C (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    6110 1irj:D (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    6111 1irj:D (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    6112 1irj:E (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    6113 1irj:E (2.1) BS03 CA ? GO:0002523 ... P06702 11851337
    6114 1irj:F (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    6115 1irj:F (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    6116 1irj:G (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    6117 1irj:G (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    6118 1irj:H (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    6119 1irj:H (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    6120 1irn:A (1.2) BS01 ZN ? GO:0005506 ... P00268 8799113
    6121 1iro:A (1.1) BS01 FE ? GO:0005506 ... P00268 8799113
    6122 1iru:1 (2.75) BS01 MG ? GO:0005839 ... Q2TBX6 12015144
    6123 1iru:1 (2.75) BS02 MG ? GO:0005839 ... Q2TBX6 12015144
    6124 1iru:A (2.75) BS01 MG ? GO:0000502 ... Q2YDE4 12015144
    6125 1iru:B (2.75) BS01 MG ? GO:0000502 ... Q3T0Y5 12015144
    6126 1iru:C (2.75) BS01 MG ? GO:0000502 ... Q3ZCK9 12015144
    6127 1iru:D (2.75) BS01 MG ? GO:0000502 ... Q3ZBG0 12015144
    6128 1iru:G (2.75) BS01 MG ? GO:0000502 ... Q58DU5 12015144
    6129 1iru:G (2.75) BS02 MG ? GO:0000502 ... Q58DU5 12015144
    6130 1iru:I (2.75) BS01 MG 3.4.25.1 GO:0004298 ... Q2TBP0 12015144
    6131 1iru:J (2.75) BS01 MG ? GO:0000502 ... P33672 12015144
    6132 1iru:J (2.75) BS02 MG ? GO:0000502 ... P33672 12015144
    6133 1iru:K (2.75) BS01 MG ? GO:0000502 ... Q5E9K0 12015144
    6134 1iru:L (2.75) BS01 MG 3.4.25.1 GO:0004298 ... Q32KL2 12015144
    6135 1iru:M (2.75) BS01 MG ? GO:0005839 ... Q2TBX6 12015144
    6136 1iru:M (2.75) BS02 MG ? GO:0005839 ... Q2TBX6 12015144
    6137 1iru:O (2.75) BS01 MG ? GO:0000502 ... Q2YDE4 12015144
    6138 1iru:P (2.75) BS01 MG ? GO:0000502 ... Q3T0Y5 12015144
    6139 1iru:Q (2.75) BS01 MG ? GO:0000502 ... Q3ZCK9 12015144
    6140 1iru:R (2.75) BS01 MG ? GO:0000502 ... Q3ZBG0 12015144
    6141 1iru:U (2.75) BS01 MG ? GO:0000502 ... Q58DU5 12015144
    6142 1iru:U (2.75) BS02 MG ? GO:0000502 ... Q58DU5 12015144
    6143 1iru:W (2.75) BS01 MG 3.4.25.1 GO:0004298 ... Q2TBP0 12015144
    6144 1iru:X (2.75) BS01 MG ? GO:0000502 ... P33672 12015144
    6145 1iru:X (2.75) BS02 MG ? GO:0000502 ... P33672 12015144
    6146 1iru:Y (2.75) BS01 MG ? GO:0000502 ... Q5E9K0 12015144
    6147 1iru:Z (2.75) BS01 MG 3.4.25.1 GO:0004298 ... Q32KL2 12015144
    6148 1irx:A (2.6) BS01 ZN 6.1.1.6 GO:0000049 ... O57963 11887185
    6149 1irx:A (2.6) BS02 ZN 6.1.1.6 GO:0000049 ... O57963 11887185
    6150 1irx:B (2.6) BS01 ZN 6.1.1.6 GO:0000049 ... O57963 11887185
    6151 1is8:A (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    6152 1is8:B (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    6153 1is8:C (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    6154 1is8:D (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    6155 1is8:E (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    6156 1is8:F (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    6157 1is8:G (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    6158 1is8:H (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    6159 1is8:I (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    6160 1is8:J (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    6161 1isa:A (1.8) BS01 FE2 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    6162 1isa:B (1.8) BS01 FE2 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    6163 1isb:A (1.85) BS01 FE 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    6164 1isb:B (1.85) BS01 FE 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    6165 1isc:A (1.8) BS01 FE 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    6166 1isc:B (1.8) BS01 FE 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    6167 1it4:A (-1.00) BS01 CA 3.1.1.4 GO:0004623 ... Q6UV28 11897786
    6168 1it6:A (2.0) BS01 MN 3.1.3.16 GO:0000070 ... P36873 12015153
    6169 1it6:A (2.0) BS02 MN 3.1.3.16 GO:0000070 ... P36873 12015153
    6170 1it6:B (2.0) BS01 MN 3.1.3.16 GO:0000070 ... P36873 12015153
    6171 1it6:B (2.0) BS02 MN 3.1.3.16 GO:0000070 ... P36873 12015153
    6172 1it7:A (2.3) BS01 ZN 2.4.2.48 GO:0002099 ... O58843 12054814
    6173 1it7:A (2.3) BS02 MG 2.4.2.48 GO:0002099 ... O58843 12054814
    6174 1it7:B (2.3) BS01 ZN 2.4.2.48 GO:0002099 ... O58843 12054814
    6175 1it7:B (2.3) BS02 MG 2.4.2.48 GO:0002099 ... O58843 12054814
    6176 1it8:A (2.5) BS01 ZN 2.4.2.48 GO:0002099 ... O58843 12054814
    6177 1it8:A (2.5) BS02 MG 2.4.2.48 GO:0002099 ... O58843 12054814
    6178 1it8:B (2.5) BS01 ZN 2.4.2.48 GO:0002099 ... O58843 12054814
    6179 1it8:B (2.5) BS02 MG 2.4.2.48 GO:0002099 ... O58843 12054814
    6180 1itc:A (2.1) BS13 CA 3.2.1.2 GO:0000272 ... P36924 12741813
    6181 1itq:A (2.3) BS01 ZN 3.4.13.19
    3.5.2.6
    GO:0005515 ... P16444 12144777
    6182 1itq:A (2.3) BS02 ZN 3.4.13.19
    3.5.2.6
    GO:0005515 ... P16444 12144777
    6183 1itq:B (2.3) BS01 ZN 3.4.13.19
    3.5.2.6
    GO:0005515 ... P16444 12144777
    6184 1itq:B (2.3) BS02 ZN 3.4.13.19
    3.5.2.6
    GO:0005515 ... P16444 12144777
    6185 1itu:A (2.0) BS01 ZN 3.4.13.19
    3.5.2.6
    GO:0005515 ... P16444 12144777
    6186 1itu:A (2.0) BS02 ZN 3.4.13.19
    3.5.2.6
    GO:0005515 ... P16444 12144777
    6187 1itu:B (2.0) BS01 ZN 3.4.13.19
    3.5.2.6
    GO:0005515 ... P16444 12144777
    6188 1itu:B (2.0) BS02 ZN 3.4.13.19
    3.5.2.6
    GO:0005515 ... P16444 12144777
    6189 1itw:A (1.95) BS01 MN 1.1.1.42 GO:0004450 ... P16100 12467571
    6190 1itw:B (1.95) BS01 MN 1.1.1.42 GO:0004450 ... P16100 12467571
    6191 1itw:C (1.95) BS01 MN 1.1.1.42 GO:0004450 ... P16100 12467571
    6192 1itw:D (1.95) BS01 MN 1.1.1.42 GO:0004450 ... P16100 12467571
    6193 1itz:A (2.3) BS01 MG 2.2.1.1 GO:0003824 ... Q7SIC9 12913150
    6194 1itz:B (2.3) BS02 MG 2.2.1.1 GO:0003824 ... Q7SIC9 12913150
    6195 1itz:C (2.3) BS01 MG 2.2.1.1 GO:0003824 ... Q7SIC9 12913150
    6196 1iu5:A (1.5) BS01 FE ? GO:0005506 ... P24297 15272158
    6197 1iu6:A (1.6) BS01 FE ? GO:0009055 ... P24297 15272158
    6198 1iu7:A (1.8) BS01 CU 1.4.3.21 GO:0005507 ... P46881 12537504
    6199 1iu7:B (1.8) BS01 CU 1.4.3.21 GO:0005507 ... P46881 12537504
    6200 1iuz:A (1.6) BS01 CU ? GO:0005507 ... P56274 9933621

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218