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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5401 1hp7:A (2.1) BS01 ZN ? GO:0002020 ... P01009 11178897
    5402 1hp7:A (2.1) BS02 ZN ? GO:0002020 ... P01009 11178897
    5403 1hp7:A (2.1) BS03 ZN ? GO:0002020 ... P01009 11178897
    5404 1hp7:A (2.1) BS04 ZN ? GO:0002020 ... P01009 11178897
    5405 1hpl:A (2.3) BS01 CA 3.1.1.3 GO:0004806 ... P29183 8182745
    5406 1hpl:B (2.3) BS01 CA 3.1.1.3 GO:0004806 ... P29183 8182745
    5407 1hpm:A (1.7) BS02 K 3.6.4.10 GO:0005524 ... P19120 7836458
    5408 1hpm:A (1.7) BS03 K 3.6.4.10 GO:0005524 ... P19120 7836458
    5409 1hpu:A (1.85) BS01 MN 3.1.3.5
    3.6.1.45
    GO:0000166 ... P07024 11491293
    5410 1hpu:A (1.85) BS02 MN 3.1.3.5
    3.6.1.45
    GO:0000166 ... P07024 11491293
    5411 1hpu:B (1.85) BS01 MN 3.1.3.5
    3.6.1.45
    GO:0000166 ... P07024 11491293
    5412 1hpu:B (1.85) BS02 MN 3.1.3.5
    3.6.1.45
    GO:0000166 ... P07024 11491293
    5413 1hpu:C (1.85) BS01 MN 3.1.3.5
    3.6.1.45
    GO:0000166 ... P07024 11491293
    5414 1hpu:C (1.85) BS02 MN 3.1.3.5
    3.6.1.45
    GO:0000166 ... P07024 11491293
    5415 1hpu:D (1.85) BS01 MN 3.1.3.5
    3.6.1.45
    GO:0000166 ... P07024 11491293
    5416 1hpu:D (1.85) BS02 MN 3.1.3.5
    3.6.1.45
    GO:0000166 ... P07024 11491293
    5417 1hq2:A (1.25) BS01 MG 2.7.6.3 GO:0000287 ... P26281 12578370
    5418 1hq2:A (1.25) BS02 MG 2.7.6.3 GO:0000287 ... P26281 12578370
    5419 1hq5:A (2.3) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11258879
    5420 1hq5:A (2.3) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11258879
    5421 1hq5:B (2.3) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11258879
    5422 1hq5:B (2.3) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11258879
    5423 1hqa:A (2.25) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 8652582
    5424 1hqa:A (2.25) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 8652582
    5425 1hqa:A (2.25) BS03 ZN 3.1.3.1 GO:0000287 ... P00634 8652582
    5426 1hqa:B (2.25) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 8652582
    5427 1hqa:B (2.25) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 8652582
    5428 1hqa:B (2.25) BS03 ZN 3.1.3.1 GO:0000287 ... P00634 8652582
    5429 1hqd:A (2.3) BS01 CA 3.1.1.3 GO:0004806 ... P22088 11453990
    5430 1hqf:A (2.9) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    5431 1hqf:A (2.9) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    5432 1hqf:B (2.9) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    5433 1hqf:B (2.9) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    5434 1hqf:C (2.9) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    5435 1hqf:C (2.9) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    5436 1hqg:A (2.0) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    5437 1hqg:A (2.0) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    5438 1hqg:B (2.0) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    5439 1hqg:B (2.0) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    5440 1hqg:C (2.0) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    5441 1hqg:C (2.0) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    5442 1hqh:A (2.8) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    5443 1hqh:A (2.8) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    5444 1hqh:B (2.8) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    5445 1hqh:B (2.8) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    5446 1hqh:C (2.8) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    5447 1hqh:C (2.8) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    5448 1hql:A (2.2) BS02 MN ? GO:0030246 ... Q8W1R6 11714721
    5449 1hql:A (2.2) BS03 CA ? GO:0030246 ... Q8W1R6 11714721
    5450 1hql:B (2.2) BS02 MN ? GO:0030246 ... Q8W1R6 11714721
    5451 1hql:B (2.2) BS03 CA ? GO:0030246 ... Q8W1R6 11714721
    5452 1hqm:D (3.3) BS01 MG 2.7.7.6 GO:0003677 ... Q9KWU6 11158566
    5453 1hqr:D (3.2) BS02 ZN ? GO:0005576 ... Q8NKX2 11163233
    5454 1hqv:A (2.3) BS01 CA ? GO:0000287 ... P12815 11525164
    5455 1hqv:A (2.3) BS02 CA ? GO:0000287 ... P12815 11525164
    5456 1hqv:A (2.3) BS03 CA ? GO:0000287 ... P12815 11525164
    5457 1hqw:A (2.4) BS02 MN ? GO:0030246 ... P02866 11330349
    5458 1hqw:A (2.4) BS03 CA ? GO:0030246 ... P02866 11330349
    5459 1hqx:A (3.0) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11278703
    5460 1hqx:A (3.0) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11278703
    5461 1hqx:B (3.0) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11278703
    5462 1hqx:B (3.0) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11278703
    5463 1hqx:C (3.0) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11278703
    5464 1hqx:C (3.0) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11278703
    5465 1hr0:N (3.2) BS02 ZN ? GO:0003735 ... P0DOY6 11228145
    5466 1hr6:B (2.5) BS01 ZN 3.4.24.64 GO:0004222 ... P10507 11470436
    5467 1hr6:D (2.5) BS01 ZN 3.4.24.64 GO:0004222 ... P10507 11470436
    5468 1hr6:F (2.5) BS01 ZN 3.4.24.64 GO:0004222 ... P10507 11470436
    5469 1hr6:H (2.5) BS01 ZN 3.4.24.64 GO:0004222 ... P10507 11470436
    5470 1hr7:B (2.55) BS01 ZN 3.4.24.64 GO:0004222 ... P10507 11470436
    5471 1hr7:D (2.55) BS01 ZN 3.4.24.64 GO:0004222 ... P10507 11470436
    5472 1hr7:F (2.55) BS01 ZN 3.4.24.64 GO:0004222 ... P10507 11470436
    5473 1hr7:H (2.55) BS01 ZN 3.4.24.64 GO:0004222 ... P10507 11470436
    5474 1hr8:B (2.7) BS02 ZN 3.4.24.64 GO:0004222 ... P10507 11470436
    5475 1hr8:D (2.7) BS02 ZN 3.4.24.64 GO:0004222 ... P10507 11470436
    5476 1hr8:F (2.7) BS02 ZN 3.4.24.64 GO:0004222 ... P10507 11470436
    5477 1hr8:H (2.7) BS02 ZN 3.4.24.64 GO:0004222 ... P10507 11470436
    5478 1hr9:B (3.01) BS02 ZN 3.4.24.64 GO:0004222 ... P10507 11470436
    5479 1hr9:D (3.01) BS02 ZN 3.4.24.64 GO:0004222 ... P10507 11470436
    5480 1hr9:F (3.01) BS02 ZN 3.4.24.64 GO:0004222 ... P10507 11470436
    5481 1hr9:H (3.01) BS02 ZN 3.4.24.64 GO:0004222 ... P10507 11470436
    5482 1hra:A (-1.00) BS01 ZN ? GO:0003700 ... P10826 8383553
    5483 1hra:A (-1.00) BS02 ZN ? GO:0003700 ... P10826 8383553
    5484 1hs6:A (1.95) BS01 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 11175901
    5485 1hse:A (2.2) BS01 FE 3.4.21.- GO:0005576 ... P02788 9003186
    5486 1hso:A (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P07327 11274460
    5487 1hso:A (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P07327 11274460
    5488 1hso:B (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P07327 11274460
    5489 1hso:B (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P07327 11274460
    5490 1hsr:A (1.6) BS01 CA 1.11.1.7 GO:0000302 ... P28313 9257700
    5491 1hsr:A (1.6) BS02 CA 1.11.1.7 GO:0000302 ... P28313 9257700
    5492 1hsz:A (2.2) BS01 ZN 1.1.1.105 GO:0001523 ... P00325 11274460
    5493 1hsz:A (2.2) BS02 ZN 1.1.1.105 GO:0001523 ... P00325 11274460
    5494 1hsz:B (2.2) BS01 ZN 1.1.1.105 GO:0001523 ... P00325 11274460
    5495 1hsz:B (2.2) BS02 ZN 1.1.1.105 GO:0001523 ... P00325 11274460
    5496 1ht0:A (2.0) BS01 ZN 1.1.1.1 GO:0004022 ... P00326 11274460
    5497 1ht0:A (2.0) BS02 ZN 1.1.1.1 GO:0004022 ... P00326 11274460
    5498 1ht0:B (2.0) BS01 ZN 1.1.1.1 GO:0004022 ... P00326 11274460
    5499 1ht0:B (2.0) BS02 ZN 1.1.1.1 GO:0004022 ... P00326 11274460
    5500 1ht3:A (1.8) BS01 HG 3.4.21.64 GO:0004252 ... P06873 11886076
    5501 1ht3:A (1.8) BS02 HG 3.4.21.64 GO:0004252 ... P06873 11886076
    5502 1ht3:A (1.8) BS03 CA 3.4.21.64 GO:0004252 ... P06873 11886076
    5503 1ht6:A (1.5) BS01 CA 3.2.1.1 GO:0004556 ... P00693 12906828
    5504 1ht6:A (1.5) BS02 CA 3.2.1.1 GO:0004556 ... P00693 12906828
    5505 1ht6:A (1.5) BS03 CA 3.2.1.1 GO:0004556 ... P00693 12906828
    5506 1ht9:A (1.76) BS01 CA ? GO:0005499 ... P02633 11316872
    5507 1ht9:A (1.76) BS02 CA ? GO:0005499 ... P02633 11316872
    5508 1ht9:B (1.76) BS01 CA ? GO:0005499 ... P02633 11316872
    5509 1ht9:B (1.76) BS02 CA ? GO:0005499 ... P02633 11316872
    5510 1htb:A (2.4) BS01 ZN 1.1.1.105 GO:0001523 ... P00325 8663387
    5511 1htb:A (2.4) BS02 ZN 1.1.1.105 GO:0001523 ... P00325 8663387
    5512 1htb:B (2.4) BS01 ZN 1.1.1.105 GO:0001523 ... P00325 8663387
    5513 1htb:B (2.4) BS02 ZN 1.1.1.105 GO:0001523 ... P00325 8663387
    5514 1htd:A (2.1) BS01 ZN 3.4.24.42 GO:0004222 ... P15167 8078901
    5515 1htd:A (2.1) BS02 CA 3.4.24.42 GO:0004222 ... P15167 8078901
    5516 1htd:B (2.1) BS01 ZN 3.4.24.42 GO:0004222 ... P15167 8078901
    5517 1htd:B (2.1) BS02 CA 3.4.24.42 GO:0004222 ... P15167 8078901
    5518 1htn:A (2.8) BS01 CA ? GO:0001503 ... P05452 9256258
    5519 1htn:A (2.8) BS02 CA ? GO:0001503 ... P05452 9256258
    5520 1hto:A (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5521 1hto:B (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5522 1hto:C (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5523 1hto:D (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5524 1hto:E (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5525 1hto:F (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5526 1hto:G (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5527 1hto:H (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5528 1hto:I (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5529 1hto:J (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5530 1hto:K (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5531 1hto:L (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5532 1hto:M (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5533 1hto:N (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5534 1hto:O (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5535 1hto:P (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5536 1hto:Q (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5537 1hto:R (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5538 1hto:S (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5539 1hto:T (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5540 1hto:U (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5541 1hto:V (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5542 1hto:W (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5543 1hto:X (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5544 1htq:A (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5545 1htq:B (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5546 1htq:C (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5547 1htq:D (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5548 1htq:E (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5549 1htq:F (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5550 1htq:G (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5551 1htq:H (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5552 1htq:I (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5553 1htq:J (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5554 1htq:K (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5555 1htq:L (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5556 1htq:M (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5557 1htq:N (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5558 1htq:O (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5559 1htq:P (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5560 1htq:Q (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5561 1htq:R (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5562 1htq:S (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5563 1htq:T (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5564 1htq:U (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5565 1htq:V (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5566 1htq:W (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5567 1htq:X (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5568 1htw:A (1.7) BS01 MG ? GO:0002949 ... P44492 12112691
    5569 1htw:B (1.7) BS01 MG ? GO:0002949 ... P44492 12112691
    5570 1htw:C (1.7) BS01 MG ? GO:0002949 ... P44492 12112691
    5571 1hty:A (1.4) BS01 ZN 3.2.1.114 GO:0000139 ... Q24451 11406577
    5572 1hu8:A (2.7) BS01 ZN ? GO:0000976 ... P02340 11152481
    5573 1hu8:B (2.7) BS01 ZN ? GO:0000976 ... P02340 11152481
    5574 1hu8:C (2.7) BS01 ZN ? GO:0000976 ... P02340 11152481
    5575 1hu9:A (2.2) BS01 FE 1.13.11.58 GO:0005737 ... P09186 12792803
    5576 1hug:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 15299369
    5577 1huh:A (2.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 15299369
    5578 1huj:A (2.1) BS01 MG 3.6.1.1 GO:0000287 ... P00817 N/A
    5579 1huj:B (2.1) BS01 MG 3.6.1.1 GO:0000287 ... P00817 N/A
    5580 1huk:A (2.2) BS01 MG 3.6.1.1 GO:0000287 ... P00817 N/A
    5581 1huk:B (2.2) BS01 MG 3.6.1.1 GO:0000287 ... P00817 N/A
    5582 1huo:A (2.6) BS03 CR 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06766 11330999
    5583 1huo:B (2.6) BS03 CR 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06766 11330999
    5584 1hup:A (2.5) BS01 CA ? N/A P11226 7634089
    5585 1hup:A (2.5) BS02 CA ? N/A P11226 7634089
    5586 1hup:A (2.5) BS03 CA ? N/A P11226 7634089
    5587 1hup:A (2.5) BS04 CA ? N/A P11226 7634089
    5588 1huq:A (1.8) BS01 MG 3.6.5.2 GO:0003924 ... P35278 11278565
    5589 1hur:A (2.0) BS01 MG 3.6.5.2 GO:0000139 ... P84077 7990966
    5590 1hur:B (2.0) BS01 MG 3.6.5.2 GO:0000139 ... P84077 7990966
    5591 1huz:A (2.6) BS03 CR 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06766 11330999
    5592 1huz:B (2.6) BS03 CR 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06766 11330999
    5593 1hv5:A (2.6) BS01 ZN 3.4.24.- GO:0004222 ... Q02853 11254383
    5594 1hv5:A (2.6) BS02 ZN 3.4.24.- GO:0004222 ... Q02853 11254383
    5595 1hv5:A (2.6) BS03 CA 3.4.24.- GO:0004222 ... Q02853 11254383
    5596 1hv5:B (2.6) BS01 ZN 3.4.24.- GO:0004222 ... Q02853 11254383
    5597 1hv5:B (2.6) BS02 ZN 3.4.24.- GO:0004222 ... Q02853 11254383
    5598 1hv5:B (2.6) BS03 CA 3.4.24.- GO:0004222 ... Q02853 11254383
    5599 1hv5:C (2.6) BS01 ZN 3.4.24.- GO:0004222 ... Q02853 11254383
    5600 1hv5:C (2.6) BS02 ZN 3.4.24.- GO:0004222 ... Q02853 11254383

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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