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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5001 1h41:A (1.5) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 12654910
    5002 1h41:A (1.5) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 12654910
    5003 1h41:A (1.5) BS05 CO 3.2.1.131 GO:0004553 ... B3PC73 12654910
    5004 1h41:A (1.5) BS06 CO 3.2.1.131 GO:0004553 ... B3PC73 12654910
    5005 1h41:B (1.5) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 12654910
    5006 1h41:B (1.5) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 12654910
    5007 1h41:B (1.5) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 12654910
    5008 1h41:B (1.5) BS05 CO 3.2.1.131 GO:0004553 ... B3PC73 12654910
    5009 1h43:A (2.2) BS02 FE 3.4.21.- GO:0005576 ... P02788 12450380
    5010 1h44:A (2.0) BS01 FE 3.4.21.- GO:0005576 ... P02788 12450380
    5011 1h45:A (1.95) BS01 FE 3.4.21.- GO:0005576 ... P02788 12450380
    5012 1h47:A (1.99) BS02 ZN 4.6.1.12 GO:0005515 ... P62617 15608374
    5013 1h47:B (1.99) BS03 ZN 4.6.1.12 GO:0005515 ... P62617 15608374
    5014 1h47:C (1.99) BS04 ZN 4.6.1.12 GO:0005515 ... P62617 15608374
    5015 1h47:D (1.99) BS02 ZN 4.6.1.12 GO:0005515 ... P62617 15608374
    5016 1h47:E (1.99) BS03 ZN 4.6.1.12 GO:0005515 ... P62617 15608374
    5017 1h47:F (1.99) BS04 ZN 4.6.1.12 GO:0005515 ... P62617 15608374
    5018 1h48:A (2.3) BS02 ZN 4.6.1.12 GO:0005515 ... P62617 15608374
    5019 1h48:A (2.3) BS04 MN 4.6.1.12 GO:0005515 ... P62617 15608374
    5020 1h48:B (2.3) BS03 ZN 4.6.1.12 GO:0005515 ... P62617 15608374
    5021 1h48:C (2.3) BS02 MN 4.6.1.12 GO:0005515 ... P62617 15608374
    5022 1h48:C (2.3) BS05 ZN 4.6.1.12 GO:0005515 ... P62617 15608374
    5023 1h48:D (2.3) BS02 ZN 4.6.1.12 GO:0005515 ... P62617 15608374
    5024 1h48:D (2.3) BS03 MN 4.6.1.12 GO:0005515 ... P62617 15608374
    5025 1h48:E (2.3) BS03 ZN 4.6.1.12 GO:0005515 ... P62617 15608374
    5026 1h48:F (2.3) BS06 ZN 4.6.1.12 GO:0005515 ... P62617 15608374
    5027 1h4b:A (-1.00) BS01 CA ? GO:0005509 ... Q39419 15037075
    5028 1h4b:A (-1.00) BS02 CA ? GO:0005509 ... Q39419 15037075
    5029 1h4i:A (1.94) BS02 CA 1.1.2.7 GO:0005509 ... P16027 7735834
    5030 1h4i:C (1.94) BS02 CA 1.1.2.7 GO:0005509 ... P16027 7735834
    5031 1h4j:A (3.0) BS02 CA 1.1.2.7 GO:0005509 ... P16027 11502173
    5032 1h4j:C (3.0) BS02 CA 1.1.2.7 GO:0005509 ... P16027 11502173
    5033 1h4j:E (3.0) BS02 CA 1.1.2.7 GO:0005509 ... P16027 11502173
    5034 1h4j:G (3.0) BS02 CA 1.1.2.7 GO:0005509 ... P16027 11502173
    5035 1h4n:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 9398308
    5036 1h4q:A (3.0) BS03 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    5037 1h4q:B (3.0) BS03 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    5038 1h4s:A (2.85) BS02 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    5039 1h4s:B (2.85) BS02 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    5040 1h4t:A (2.9) BS02 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    5041 1h4t:B (2.9) BS02 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    5042 1h4t:C (2.9) BS02 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    5043 1h4t:D (2.9) BS02 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    5044 1h4w:A (1.7) BS02 CA 3.4.21.4 GO:0004252 ... P35030 11827488
    5045 1h55:A (1.61) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5046 1h55:A (1.61) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5047 1h56:A (3.0) BS01 MG 3.1.21.4 GO:0003677 ... P23657 12888347
    5048 1h56:B (3.0) BS01 MG 3.1.21.4 GO:0003677 ... P23657 12888347
    5049 1h57:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5050 1h57:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5051 1h58:A (1.7) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5052 1h58:A (1.7) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5053 1h5a:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5054 1h5a:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5055 1h5c:A (1.62) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5056 1h5c:A (1.62) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5057 1h5d:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5058 1h5d:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5059 1h5e:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5060 1h5e:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5061 1h5f:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5062 1h5f:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5063 1h5g:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5064 1h5g:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5065 1h5h:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5066 1h5h:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5067 1h5i:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5068 1h5i:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5069 1h5j:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5070 1h5j:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5071 1h5k:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5072 1h5k:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5073 1h5l:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5074 1h5l:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5075 1h5m:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5076 1h5m:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5077 1h5v:A (1.1) BS05 CA 3.2.1.4 GO:0000272 ... O85465 11679762
    5078 1h5v:A (1.1) BS06 CA 3.2.1.4 GO:0000272 ... O85465 11679762
    5079 1h5v:A (1.1) BS07 CA 3.2.1.4 GO:0000272 ... O85465 11679762
    5080 1h65:A (2.0) BS02 MG 3.6.5.- GO:0005525 ... Q41009 11753431
    5081 1h65:B (2.0) BS02 MG 3.6.5.- GO:0005525 ... Q41009 11753431
    5082 1h65:C (2.0) BS03 MG 3.6.5.- GO:0005525 ... Q41009 11753431
    5083 1h6l:A (1.8) BS01 CA 3.1.3.8 GO:0005576 ... O66037 11566134
    5084 1h6l:A (1.8) BS02 CA 3.1.3.8 GO:0005576 ... O66037 11566134
    5085 1h6l:A (1.8) BS03 CA 3.1.3.8 GO:0005576 ... O66037 11566134
    5086 1h6l:A (1.8) BS04 CA 3.1.3.8 GO:0005576 ... O66037 11566134
    5087 1h6l:A (1.8) BS05 CA 3.1.3.8 GO:0005576 ... O66037 11566134
    5088 1h6l:A (1.8) BS06 CA 3.1.3.8 GO:0005576 ... O66037 11566134
    5089 1h6l:A (1.8) BS07 CA 3.1.3.8 GO:0005576 ... O66037 11566134
    5090 1h6x:A (2.25) BS01 CA 3.2.1.8 GO:0016798 ... P51584 11478884
    5091 1h6y:A (2.2) BS01 CA 3.2.1.8 GO:0016798 ... P51584 11478884
    5092 1h6y:B (2.2) BS01 CA 3.2.1.8 GO:0016798 ... P51584 11478884
    5093 1h71:P (2.1) BS01 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    5094 1h71:P (2.1) BS02 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    5095 1h71:P (2.1) BS03 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    5096 1h71:P (2.1) BS04 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    5097 1h71:P (2.1) BS05 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    5098 1h71:P (2.1) BS06 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    5099 1h71:P (2.1) BS07 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    5100 1h71:P (2.1) BS08 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    5101 1h71:P (2.1) BS09 ZN 3.4.24.40 GO:0004222 ... O69771 12577270
    5102 1h76:A (2.15) BS03 FE ? GO:0005576 ... P09571 11752780
    5103 1h76:A (2.15) BS04 FE ? GO:0005576 ... P09571 11752780
    5104 1h79:A (2.9) BS02 FE2 1.1.98.6 GO:0003824 ... P07071 11587648
    5105 1h7a:A (2.75) BS02 FE2 1.1.98.6 GO:0003824 ... P07071 11587648
    5106 1h7n:A (1.6) BS02 ZN 4.2.1.24 GO:0004655 ... P05373 11545591
    5107 1h7o:A (1.75) BS02 ZN 4.2.1.24 GO:0004655 ... P05373 11545591
    5108 1h7p:A (1.64) BS02 ZN 4.2.1.24 GO:0004655 ... P05373 11545591
    5109 1h7q:A (2.0) BS02 MG ? GO:0016757 ... P39621 11733986
    5110 1h7r:A (2.0) BS02 ZN 4.2.1.24 GO:0004655 ... P05373 11545591
    5111 1h7u:B (2.7) BS01 MG 3.1.-.- GO:0005524 ... P54278 11574484
    5112 1h7v:A (-1.00) BS01 ZN ? GO:0005506 ... Q9XG40 10975569
    5113 1h80:A (1.6) BS01 CA 3.2.1.157 GO:0000272 ... Q9F5I8 11493601
    5114 1h80:A (1.6) BS02 CA 3.2.1.157 GO:0000272 ... Q9F5I8 11493601
    5115 1h80:A (1.6) BS03 CA 3.2.1.157 GO:0000272 ... Q9F5I8 11493601
    5116 1h80:A (1.6) BS05 NA 3.2.1.157 GO:0000272 ... Q9F5I8 11493601
    5117 1h80:B (1.6) BS01 CA 3.2.1.157 GO:0000272 ... Q9F5I8 11493601
    5118 1h80:B (1.6) BS02 CA 3.2.1.157 GO:0000272 ... Q9F5I8 11493601
    5119 1h80:B (1.6) BS03 CA 3.2.1.157 GO:0000272 ... Q9F5I8 11493601
    5120 1h80:B (1.6) BS05 NA 3.2.1.157 GO:0000272 ... Q9F5I8 11493601
    5121 1h8l:A (2.6) BS02 ZN 3.4.17.22 GO:0004180 ... P83852 11278909
    5122 1h96:A (1.6) BS01 CD ? GO:0005506 ... P29391 11679711
    5123 1h96:A (1.6) BS02 CD ? GO:0005506 ... P29391 11679711
    5124 1h96:A (1.6) BS03 CD ? GO:0005506 ... P29391 11679711
    5125 1h9h:E (1.5) BS01 CA 3.4.21.4 GO:0004252 ... P00761 16131759
    5126 1h9i:E (1.9) BS01 CA 3.4.21.4 GO:0004252 ... P00761 16131759
    5127 1h9l:B (1.67) BS02 CA 3.4.21.36 GO:0004252 ... P00772 11358514
    5128 1h9n:A (1.85) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 9398308
    5129 1h9p:A (2.0) BS01 CD ? GO:0005537 ... P81637 11453695
    5130 1h9p:A (2.0) BS02 CD ? GO:0005537 ... P81637 11453695
    5131 1h9p:A (2.0) BS03 CD ? GO:0005537 ... P81637 11453695
    5132 1h9p:A (2.0) BS04 MN ? GO:0005537 ... P81637 11453695
    5133 1h9q:A (2.2) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 9398308
    5134 1h9w:A (2.0) BS01 MN ? GO:0005537 ... P81637 11453695
    5135 1h9w:A (2.0) BS02 CA ? GO:0005537 ... P81637 11453695
    5136 1h9w:A (2.0) BS03 MN ? GO:0005537 ... P81637 11453695
    5137 1h9w:A (2.0) BS04 CA ? GO:0005537 ... P81637 11453695
    5138 1h9w:B (2.0) BS01 MN ? GO:0005537 ... P81637 11453695
    5139 1h9w:B (2.0) BS02 CA ? GO:0005537 ... P81637 11453695
    5140 1h9w:B (2.0) BS03 MN ? GO:0005537 ... P81637 11453695
    5141 1ha5:A (2.82) BS01 ZN ? GO:0005576 ... P0DJY7 11369867
    5142 1ha5:B (2.82) BS01 ZN ? GO:0005576 ... P0DJY7 11369867
    5143 1ha5:C (2.82) BS01 ZN ? GO:0005576 ... P0DJY7 11369867
    5144 1ha5:D (2.82) BS01 ZN ? GO:0005576 ... P0DJY7 11369867
    5145 1han:A (1.9) BS01 FE 1.13.11.39 GO:0003824 ... P47228 7481800
    5146 1han:A (1.9) BS02 FE 1.13.11.39 GO:0003824 ... P47228 7481800
    5147 1hau:A (1.9) BS01 CU 1.7.2.1 GO:0005507 ... O68601 11468394
    5148 1hau:A (1.9) BS02 CU 1.7.2.1 GO:0005507 ... O68601 11468394
    5149 1haw:A (1.9) BS01 CU1 1.7.2.1 GO:0005507 ... O68601 11468394
    5150 1hax:B (1.6) BS02 CA 3.4.21.36 GO:0004252 ... P00772 11473259
    5151 1hay:B (1.7) BS01 CA 3.4.21.36 GO:0004252 ... P00772 11473259
    5152 1haz:B (1.4) BS02 CA 3.4.21.36 GO:0004252 ... P00772 11473259
    5153 1hb0:B (2.05) BS01 CA 3.4.21.36 GO:0004252 ... P00772 11473259
    5154 1hb1:A (1.55) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 11755401
    5155 1hb2:A (1.3) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 11755401
    5156 1hb3:A (1.4) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 11755401
    5157 1hb4:A (1.5) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 11755401
    5158 1hbn:A (1.16) BS04 MG 2.8.4.1 GO:0005737 ... P11558 11491299
    5159 1hbn:F (1.16) BS02 MG 2.8.4.1 GO:0005737 ... P11562 11491299
    5160 1hbu:A (1.9) BS04 MG 2.8.4.1 GO:0005737 ... P11558 11491299
    5161 1hc1:A (3.2) BS01 CU ? GO:0005344 ... P04254 2585484
    5162 1hc1:A (3.2) BS02 CU ? GO:0005344 ... P04254 2585484
    5163 1hc1:B (3.2) BS01 CU ? GO:0005344 ... P04254 2585484
    5164 1hc1:B (3.2) BS02 CU ? GO:0005344 ... P04254 2585484
    5165 1hc1:C (3.2) BS01 CU ? GO:0005344 ... P04254 2585484
    5166 1hc1:C (3.2) BS02 CU ? GO:0005344 ... P04254 2585484
    5167 1hc1:D (3.2) BS01 CU ? GO:0005344 ... P04254 2585484
    5168 1hc1:D (3.2) BS02 CU ? GO:0005344 ... P04254 2585484
    5169 1hc1:E (3.2) BS01 CU ? GO:0005344 ... P04254 2585484
    5170 1hc1:E (3.2) BS02 CU ? GO:0005344 ... P04254 2585484
    5171 1hc1:F (3.2) BS01 CU ? GO:0005344 ... P04254 2585484
    5172 1hc1:F (3.2) BS02 CU ? GO:0005344 ... P04254 2585484
    5173 1hc7:A (2.43) BS01 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    5174 1hc7:B (2.43) BS01 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    5175 1hc7:C (2.43) BS01 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    5176 1hc7:D (2.43) BS01 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    5177 1hca:A (2.3) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    5178 1hcb:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 8057362
    5179 1hch:A (1.57) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5180 1hch:A (1.57) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    5181 1hck:A (1.9) BS01 MG 2.7.11.22 GO:0000082 ... P24941 8917641
    5182 1hcp:A (-1.00) BS01 ZN ? GO:0003700 ... P03372 16100953
    5183 1hcp:A (-1.00) BS02 ZN ? GO:0003700 ... P03372 16100953
    5184 1hcq:A (2.4) BS03 ZN ? GO:0003700 ... P03372 8221895
    5185 1hcq:A (2.4) BS04 ZN ? GO:0003700 ... P03372 8221895
    5186 1hcq:B (2.4) BS03 ZN ? GO:0003700 ... P03372 8221895
    5187 1hcq:B (2.4) BS04 ZN ? GO:0003700 ... P03372 8221895
    5188 1hcq:E (2.4) BS03 ZN ? GO:0003700 ... P03372 8221895
    5189 1hcq:E (2.4) BS04 ZN ? GO:0003700 ... P03372 8221895
    5190 1hcq:F (2.4) BS03 ZN ? GO:0003700 ... P03372 8221895
    5191 1hcq:F (2.4) BS04 ZN ? GO:0003700 ... P03372 8221895
    5192 1hcy:A (3.2) BS01 CU ? GO:0005344 ... P04254 2585484
    5193 1hcy:A (3.2) BS02 CU ? GO:0005344 ... P04254 2585484
    5194 1hdf:A (2.35) BS01 CA ? GO:0005737 ... P09353 11250196
    5195 1hdf:A (2.35) BS02 CA ? GO:0005737 ... P09353 11250196
    5196 1hdf:B (2.35) BS01 CA ? GO:0005737 ... P09353 11250196
    5197 1hdf:B (2.35) BS02 CA ? GO:0005737 ... P09353 11250196
    5198 1hdh:A (1.3) BS01 CA 3.1.6.1 GO:0004065 ... P51691 11435113
    5199 1hdh:B (1.3) BS01 CA 3.1.6.1 GO:0004065 ... P51691 11435113
    5200 1hdq:A (2.3) BS02 ZN 3.4.17.1 GO:0004181 ... P00730 11937361
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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