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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4601 1gq6:A (1.75) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    4602 1gq6:A (1.75) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    4603 1gq6:B (1.75) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    4604 1gq6:B (1.75) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    4605 1gq6:C (1.75) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    4606 1gq6:C (1.75) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    4607 1gq7:A (2.45) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    4608 1gq7:A (2.45) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    4609 1gq7:B (2.45) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    4610 1gq7:B (2.45) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    4611 1gq7:C (2.45) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    4612 1gq7:C (2.45) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    4613 1gq7:D (2.45) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    4614 1gq7:D (2.45) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    4615 1gq7:E (2.45) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    4616 1gq7:E (2.45) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    4617 1gq7:F (2.45) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    4618 1gq7:F (2.45) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    4619 1gq9:A (2.6) BS01 MG 2.7.7.38 GO:0005737 ... P42216 11802716
    4620 1gq9:B (2.6) BS01 MG 2.7.7.38 GO:0005737 ... P42216 11802716
    4621 1gqc:A (2.6) BS01 MG 2.7.7.38 GO:0005737 ... P42216 11802716
    4622 1gqc:B (2.6) BS01 MG 2.7.7.38 GO:0005737 ... P42216 11802716
    4623 1gqg:A (1.7) BS02 CU 1.13.11.24 GO:0008127 ... Q7SIC2 12069585
    4624 1gqg:B (1.7) BS02 CU 1.13.11.24 GO:0008127 ... Q7SIC2 12069585
    4625 1gqg:C (1.7) BS02 CU 1.13.11.24 GO:0008127 ... Q7SIC2 12069585
    4626 1gqg:D (1.7) BS02 CU 1.13.11.24 GO:0008127 ... Q7SIC2 12069585
    4627 1gqh:A (2.15) BS02 CU 1.13.11.24 GO:0008127 ... Q7SIC2 12069585
    4628 1gqh:B (2.15) BS02 CU 1.13.11.24 GO:0008127 ... Q7SIC2 12069585
    4629 1gqh:C (2.15) BS02 CU 1.13.11.24 GO:0008127 ... Q7SIC2 12069585
    4630 1gqh:D (2.15) BS02 CU 1.13.11.24 GO:0008127 ... Q7SIC2 12069585
    4631 1gqi:A (1.48) BS01 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    4632 1gqi:A (1.48) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    4633 1gqi:A (1.48) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    4634 1gqi:B (1.48) BS01 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    4635 1gqi:B (1.48) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    4636 1gqi:B (1.48) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    4637 1gqi:B (1.48) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    4638 1gqj:A (1.9) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    4639 1gqj:A (1.9) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    4640 1gqj:A (1.9) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    4641 1gqj:A (1.9) BS05 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    4642 1gqj:B (1.9) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    4643 1gqj:B (1.9) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    4644 1gqj:B (1.9) BS05 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    4645 1gqk:A (1.9) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    4646 1gqk:A (1.9) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    4647 1gqk:A (1.9) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    4648 1gqk:B (1.9) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    4649 1gqk:B (1.9) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    4650 1gqk:B (1.9) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    4651 1gql:A (1.67) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    4652 1gql:A (1.67) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    4653 1gql:A (1.67) BS05 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    4654 1gql:A (1.67) BS06 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    4655 1gql:B (1.67) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    4656 1gql:B (1.67) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    4657 1gql:B (1.67) BS05 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    4658 1gqm:A (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    4659 1gqm:A (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    4660 1gqm:A (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    4661 1gqm:B (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    4662 1gqm:B (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    4663 1gqm:B (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    4664 1gqm:C (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    4665 1gqm:C (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    4666 1gqm:C (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    4667 1gqm:D (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    4668 1gqm:D (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    4669 1gqm:D (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    4670 1gqm:E (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    4671 1gqm:E (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    4672 1gqm:E (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    4673 1gqm:F (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    4674 1gqm:F (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    4675 1gqm:F (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    4676 1gqm:G (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    4677 1gqm:G (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    4678 1gqm:G (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    4679 1gqm:H (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    4680 1gqm:H (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    4681 1gqm:H (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    4682 1gqm:I (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    4683 1gqm:I (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    4684 1gqm:I (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    4685 1gqm:J (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    4686 1gqm:J (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    4687 1gqm:J (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    4688 1gqm:K (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    4689 1gqm:K (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    4690 1gqm:K (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    4691 1gqm:L (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    4692 1gqm:L (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    4693 1gqm:L (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    4694 1gqt:A (2.34) BS01 CS 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    4695 1gqt:B (2.34) BS01 CS 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    4696 1gqt:C (2.34) BS01 CS 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    4697 1gqt:D (2.34) BS01 CS 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    4698 1gqw:A (3.0) BS01 FE2 1.14.11.17 GO:0000908 ... P37610 11955067
    4699 1gqw:B (3.0) BS01 FE2 1.14.11.17 GO:0000908 ... P37610 11955067
    4700 1gqy:A (1.8) BS02 MG 6.3.2.8 GO:0005524 ... P45066 N/A
    4701 1gqy:B (1.8) BS02 MG 6.3.2.8 GO:0005524 ... P45066 N/A
    4702 1gr3:A (2.0) BS01 CA ? N/A Q03692 11839302
    4703 1gr7:A (1.8) BS01 CU ? GO:0005507 ... P00282 12007613
    4704 1gr7:B (1.8) BS01 CU ? GO:0005507 ... P00282 12007613
    4705 1gr7:C (1.8) BS01 CU ? GO:0005507 ... P00282 12007613
    4706 1gr7:D (1.8) BS01 CU ? GO:0005507 ... P00282 12007613
    4707 1grn:A (2.1) BS01 MG 3.6.5.2 GO:0000139 ... P60953 9846874
    4708 1gro:A (2.5) BS01 MG 1.1.1.42 GO:0000287 ... P08200 8745407
    4709 1grp:A (2.5) BS01 MG 1.1.1.42 GO:0000287 ... P08200 8745407
    4710 1grv:A (2.9) BS01 MG 2.4.2.8 GO:0000166 ... P0A9M2 12070315
    4711 1grv:B (2.9) BS01 MG 2.4.2.8 GO:0000166 ... P0A9M2 12070315
    4712 1gs6:X (2.2) BS01 CU 1.7.2.1 GO:0005507 ... O68601 11829502
    4713 1gs6:X (2.2) BS02 CU 1.7.2.1 GO:0005507 ... O68601 11829502
    4714 1gs6:X (2.2) BS03 MG 1.7.2.1 GO:0005507 ... O68601 11829502
    4715 1gs7:A (1.85) BS01 CU 1.7.2.1 GO:0005507 ... O68601 11829502
    4716 1gs7:A (1.85) BS02 ZN 1.7.2.1 GO:0005507 ... O68601 11829502
    4717 1gs7:A (1.85) BS03 ZN 1.7.2.1 GO:0005507 ... O68601 11829502
    4718 1gs8:A (1.9) BS01 CU 1.7.2.1 GO:0005507 ... O68601 11829502
    4719 1gs8:A (1.9) BS02 CU 1.7.2.1 GO:0005507 ... O68601 11829502
    4720 1gs8:A (1.9) BS03 ZN 1.7.2.1 GO:0005507 ... O68601 11829502
    4721 1gs8:A (1.9) BS04 ZN 1.7.2.1 GO:0005507 ... O68601 11829502
    4722 1gsa:A (2.0) BS01 MG 6.3.2.3 GO:0000287 ... P04425 8810901
    4723 1gsa:A (2.0) BS02 MG 6.3.2.3 GO:0000287 ... P04425 8810901
    4724 1gsi:A (1.6) BS01 MG 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    4725 1gsk:A (1.7) BS01 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 12637519
    4726 1gsl:A (2.0) BS05 MN ? GO:0030246 ... P24146 8478943
    4727 1gsl:A (2.0) BS06 CA ? GO:0030246 ... P24146 8478943
    4728 1gt7:A (2.7) BS01 ZN 4.1.2.19 GO:0005737 ... P32169 11976494
    4729 1gt7:B (2.7) BS01 ZN 4.1.2.19 GO:0005737 ... P32169 11976494
    4730 1gt7:C (2.7) BS01 ZN 4.1.2.19 GO:0005737 ... P32169 11976494
    4731 1gt7:D (2.7) BS01 ZN 4.1.2.19 GO:0005737 ... P32169 11976494
    4732 1gt7:E (2.7) BS01 ZN 4.1.2.19 GO:0005737 ... P32169 11976494
    4733 1gt7:F (2.7) BS01 ZN 4.1.2.19 GO:0005737 ... P32169 11976494
    4734 1gt7:G (2.7) BS01 ZN 4.1.2.19 GO:0005737 ... P32169 11976494
    4735 1gt7:H (2.7) BS01 ZN 4.1.2.19 GO:0005737 ... P32169 11976494
    4736 1gt7:I (2.7) BS01 ZN 4.1.2.19 GO:0005737 ... P32169 11976494
    4737 1gt7:J (2.7) BS01 ZN 4.1.2.19 GO:0005737 ... P32169 11976494
    4738 1gt7:K (2.7) BS01 ZN 4.1.2.19 GO:0005737 ... P32169 11976494
    4739 1gt7:L (2.7) BS01 ZN 4.1.2.19 GO:0005737 ... P32169 11976494
    4740 1gt7:M (2.7) BS01 ZN 4.1.2.19 GO:0005737 ... P32169 11976494
    4741 1gt7:N (2.7) BS01 ZN 4.1.2.19 GO:0005737 ... P32169 11976494
    4742 1gt7:O (2.7) BS01 ZN 4.1.2.19 GO:0005737 ... P32169 11976494
    4743 1gt7:P (2.7) BS01 ZN 4.1.2.19 GO:0005737 ... P32169 11976494
    4744 1gt7:Q (2.7) BS01 ZN 4.1.2.19 GO:0005737 ... P32169 11976494
    4745 1gt7:R (2.7) BS01 ZN 4.1.2.19 GO:0005737 ... P32169 11976494
    4746 1gt7:S (2.7) BS01 ZN 4.1.2.19 GO:0005737 ... P32169 11976494
    4747 1gt7:T (2.7) BS01 ZN 4.1.2.19 GO:0005737 ... P32169 11976494
    4748 1gt9:1 (1.38) BS01 CA ? GO:0004252 ... Q8RR56 12057200
    4749 1gt9:2 (1.38) BS01 CA ? GO:0004252 ... Q8RR56 12057200
    4750 1gtg:1 (2.3) BS01 CA ? GO:0004252 ... Q8RR56 12057200
    4751 1gtj:1 (1.75) BS02 CA ? GO:0004252 ... Q8RR56 12057200
    4752 1gtj:2 (1.75) BS02 CA ? GO:0004252 ... Q8RR56 12057200
    4753 1gtl:1 (2.8) BS02 CA ? GO:0004252 ... Q8RR56 12057200
    4754 1gtl:2 (2.8) BS02 CA ? GO:0004252 ... Q8RR56 12057200
    4755 1gtq:A (2.3) BS01 ZN 4.2.3.12 GO:0003874 ... P27213 8137809
    4756 1gtq:B (2.3) BS01 ZN 4.2.3.12 GO:0003874 ... P27213 8137809
    4757 1gtt:A (1.7) BS01 CA 4.1.1.68
    5.3.3.10
    GO:0003824 ... P37352 11863436
    4758 1gtt:B (1.7) BS01 CA 4.1.1.68
    5.3.3.10
    GO:0003824 ... P37352 11863436
    4759 1gtt:C (1.7) BS01 CA 4.1.1.68
    5.3.3.10
    GO:0003824 ... P37352 11863436
    4760 1gtt:D (1.7) BS01 CA 4.1.1.68
    5.3.3.10
    GO:0003824 ... P37352 11863436
    4761 1gtv:A (1.55) BS01 MG 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    4762 1gtv:A (1.55) BS03 MG 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    4763 1gtv:B (1.55) BS01 MG 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    4764 1gtv:B (1.55) BS03 MG 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    4765 1gu6:A (2.5) BS01 CA 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    4766 1gu6:C (2.5) BS01 CA 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    4767 1gu6:E (2.5) BS02 CA 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    4768 1gu6:G (2.5) BS02 CA 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    4769 1gua:A (2.0) BS01 MG 3.6.5.2 GO:0003924 ... P62834 8756332
    4770 1gua:B (2.0) BS01 CA 2.7.11.1 GO:0007165 ... P04049 8756332
    4771 1gud:A (1.71) BS01 ZN ? GO:0015752 ... P39265 10064713
    4772 1gui:A (1.9) BS04 CA ? GO:0016798 ... Q9WXN1 12079353
    4773 1gup:A (1.8) BS02 ZN 2.7.7.12 GO:0004335 ... P09148 9063869
    4774 1gup:A (1.8) BS03 FE 2.7.7.12 GO:0004335 ... P09148 9063869
    4775 1gup:A (1.8) BS05 K 2.7.7.12 GO:0004335 ... P09148 9063869
    4776 1gup:B (1.8) BS02 K 2.7.7.12 GO:0004335 ... P09148 9063869
    4777 1gup:B (1.8) BS04 ZN 2.7.7.12 GO:0004335 ... P09148 9063869
    4778 1gup:B (1.8) BS05 FE 2.7.7.12 GO:0004335 ... P09148 9063869
    4779 1gup:C (1.8) BS02 ZN 2.7.7.12 GO:0004335 ... P09148 9063869
    4780 1gup:C (1.8) BS03 FE 2.7.7.12 GO:0004335 ... P09148 9063869
    4781 1gup:C (1.8) BS04 K 2.7.7.12 GO:0004335 ... P09148 9063869
    4782 1gup:D (1.8) BS03 ZN 2.7.7.12 GO:0004335 ... P09148 9063869
    4783 1gup:D (1.8) BS04 FE 2.7.7.12 GO:0004335 ... P09148 9063869
    4784 1gup:D (1.8) BS05 K 2.7.7.12 GO:0004335 ... P09148 9063869
    4785 1guq:A (1.8) BS01 ZN 2.7.7.12 GO:0004335 ... P09148 9063869
    4786 1guq:A (1.8) BS02 FE 2.7.7.12 GO:0004335 ... P09148 9063869
    4787 1guq:A (1.8) BS03 K 2.7.7.12 GO:0004335 ... P09148 9063869
    4788 1guq:B (1.8) BS02 ZN 2.7.7.12 GO:0004335 ... P09148 9063869
    4789 1guq:B (1.8) BS03 FE 2.7.7.12 GO:0004335 ... P09148 9063869
    4790 1guq:B (1.8) BS04 K 2.7.7.12 GO:0004335 ... P09148 9063869
    4791 1guq:C (1.8) BS01 ZN 2.7.7.12 GO:0004335 ... P09148 9063869
    4792 1guq:C (1.8) BS02 FE 2.7.7.12 GO:0004335 ... P09148 9063869
    4793 1guq:C (1.8) BS03 K 2.7.7.12 GO:0004335 ... P09148 9063869
    4794 1guq:D (1.8) BS02 ZN 2.7.7.12 GO:0004335 ... P09148 9063869
    4795 1guq:D (1.8) BS03 FE 2.7.7.12 GO:0004335 ... P09148 9063869
    4796 1guq:D (1.8) BS04 K 2.7.7.12 GO:0004335 ... P09148 9063869
    4797 1gv3:A (2.0) BS01 MN 1.15.1.1 GO:0004784 ... Q8Z0M1 12162960
    4798 1gv3:B (2.0) BS01 MN 1.15.1.1 GO:0004784 ... Q8Z0M1 12162960
    4799 1gv8:A (1.95) BS03 FE ? GO:0005576 ... P56410 11976488
    4800 1gvf:A (1.45) BS02 ZN 4.1.2.40 GO:0005515 ... P0AB74 11940603

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218