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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4401 1ggy:A (2.5) BS01 YB 2.3.2.13 GO:0003810 ... P00488 9988734
    4402 1ggy:B (2.5) BS01 YB 2.3.2.13 GO:0003810 ... P00488 9988734
    4403 1ggy:B (2.5) BS02 YB 2.3.2.13 GO:0003810 ... P00488 9988734
    4404 1ggz:A (1.5) BS01 CA ? GO:0005509 ... P27482 12067719
    4405 1ggz:A (1.5) BS02 CA ? GO:0005509 ... P27482 12067719
    4406 1ggz:A (1.5) BS03 CA ? GO:0005509 ... P27482 12067719
    4407 1ggz:A (1.5) BS04 CA ? GO:0005509 ... P27482 12067719
    4408 1gh4:A (1.9) BS01 CA 3.1.1.4 GO:0002227 ... P00593 12460575
    4409 1gh4:A (1.9) BS02 CA 3.1.1.4 GO:0002227 ... P00593 12460575
    4410 1ghy:H (1.85) BS02 ZN 3.4.21.5 GO:0004252 ... P00734 11292354
    4411 1ghz:A (1.39) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11292354
    4412 1ghz:A (1.39) BS02 MG 3.4.21.4 GO:0004175 ... P00760 11292354
    4413 1gi0:A (1.42) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11292354
    4414 1gi0:A (1.42) BS02 MG 3.4.21.4 GO:0004175 ... P00760 11292354
    4415 1gi1:A (1.42) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11292354
    4416 1gi2:A (1.38) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11292354
    4417 1gi3:A (1.44) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11292354
    4418 1gi4:A (1.37) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11292354
    4419 1gi4:A (1.37) BS02 ZN 3.4.21.4 GO:0004175 ... P00760 11292354
    4420 1gi5:A (1.6) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11292354
    4421 1gi6:A (1.49) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11292354
    4422 1gia:A (2.0) BS01 MG ? GO:0000287 ... P10824 8073283
    4423 1gic:A (2.0) BS02 MN ? GO:0030246 ... P02866 15299735
    4424 1gic:A (2.0) BS03 CA ? GO:0030246 ... P02866 15299735
    4425 1gic:B (2.0) BS02 MN ? GO:0030246 ... P02866 15299735
    4426 1gic:B (2.0) BS03 CA ? GO:0030246 ... P02866 15299735
    4427 1gil:A (2.3) BS01 MG ? GO:0000287 ... P10824 8073283
    4428 1gim:A (2.5) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 9000627
    4429 1gin:A (2.8) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 9000627
    4430 1gj6:A (1.5) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11731301
    4431 1gjp:A (1.8) BS02 ZN 4.2.1.24 GO:0004655 ... P05373 11513881
    4432 1gjv:A (2.7) BS01 K 2.7.11.1
    2.7.11.4
    GO:0004672 ... Q00972 11562470
    4433 1gk8:A (1.4) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11641402
    4434 1gk8:C (1.4) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11641402
    4435 1gk8:E (1.4) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11641402
    4436 1gk8:G (1.4) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11641402
    4437 1gk9:B (1.3) BS01 CA 3.5.1.11 GO:0016787 ... P06875 11601852
    4438 1gkb:A (1.56) BS01 MN ? GO:0030246 ... P02866 11976483
    4439 1gkb:A (1.56) BS02 CA ? GO:0030246 ... P02866 11976483
    4440 1gkb:A (1.56) BS03 MG ? GO:0030246 ... P02866 11976483
    4441 1gkb:B (1.56) BS01 MN ? GO:0030246 ... P02866 11976483
    4442 1gkb:B (1.56) BS02 CA ? GO:0030246 ... P02866 11976483
    4443 1gkb:B (1.56) BS03 MG ? GO:0030246 ... P02866 11976483
    4444 1gkc:A (2.3) BS01 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    4445 1gkc:A (2.3) BS02 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    4446 1gkc:A (2.3) BS03 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    4447 1gkc:A (2.3) BS04 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    4448 1gkc:A (2.3) BS06 ZN 3.4.24.35 GO:0004222 ... P14780 12051944
    4449 1gkc:A (2.3) BS07 ZN 3.4.24.35 GO:0004222 ... P14780 12051944
    4450 1gkc:B (2.3) BS01 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    4451 1gkc:B (2.3) BS02 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    4452 1gkc:B (2.3) BS03 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    4453 1gkc:B (2.3) BS04 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    4454 1gkc:B (2.3) BS06 ZN 3.4.24.35 GO:0004222 ... P14780 12051944
    4455 1gkc:B (2.3) BS07 ZN 3.4.24.35 GO:0004222 ... P14780 12051944
    4456 1gkd:A (2.1) BS01 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    4457 1gkd:A (2.1) BS02 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    4458 1gkd:A (2.1) BS03 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    4459 1gkd:A (2.1) BS04 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    4460 1gkd:A (2.1) BS07 ZN 3.4.24.35 GO:0004222 ... P14780 12051944
    4461 1gkd:A (2.1) BS08 ZN 3.4.24.35 GO:0004222 ... P14780 12051944
    4462 1gkd:B (2.1) BS01 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    4463 1gkd:B (2.1) BS02 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    4464 1gkd:B (2.1) BS03 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    4465 1gkd:B (2.1) BS04 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    4466 1gkd:B (2.1) BS07 ZN 3.4.24.35 GO:0004222 ... P14780 12051944
    4467 1gkd:B (2.1) BS08 ZN 3.4.24.35 GO:0004222 ... P14780 12051944
    4468 1gkf:B (1.41) BS12 CA 3.5.1.11 GO:0016787 ... P06875 11601852
    4469 1gkp:A (1.295) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    4470 1gkp:A (1.295) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    4471 1gkp:B (1.295) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    4472 1gkp:B (1.295) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    4473 1gkp:C (1.295) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    4474 1gkp:C (1.295) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    4475 1gkp:D (1.295) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    4476 1gkp:D (1.295) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    4477 1gkp:E (1.295) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    4478 1gkp:E (1.295) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    4479 1gkp:F (1.295) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    4480 1gkp:F (1.295) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    4481 1gkq:A (2.6) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    4482 1gkq:A (2.6) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    4483 1gkq:B (2.6) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    4484 1gkq:B (2.6) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    4485 1gkq:C (2.6) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    4486 1gkq:C (2.6) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    4487 1gkq:D (2.6) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    4488 1gkq:D (2.6) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    4489 1gkr:A (2.6) BS01 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    4490 1gkr:A (2.6) BS02 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    4491 1gkr:B (2.6) BS01 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    4492 1gkr:B (2.6) BS02 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    4493 1gkr:C (2.6) BS01 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    4494 1gkr:C (2.6) BS02 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    4495 1gkr:D (2.6) BS01 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    4496 1gkr:D (2.6) BS02 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    4497 1gkz:A (2.2) BS01 K 2.7.11.1
    2.7.11.4
    GO:0004672 ... Q00972 11562470
    4498 1gl4:A (2.0) BS01 ZN ? N/A P10493 11574465
    4499 1glc:F (2.65) BS01 ZN 2.7.1.69 GO:0005515 ... P69783 8170944
    4500 1gld:G (2.93) BS01 MN 2.7.1.30 GO:0004370 ... P0A6F3 8170944
    4501 1gle:F (2.94) BS01 ZN 2.7.1.69 GO:0005515 ... P69783 8170944
    4502 1glg:A (2.0) BS02 CA ? GO:0005509 ... P0AEE5 8161535
    4503 1glh:A (2.0) BS01 NA 3.2.1.73 GO:0004553 ... P23904 8200344
    4504 1glu:A (2.9) BS03 ZN ? GO:0003700 ... P06536 1865905
    4505 1glu:A (2.9) BS04 ZN ? GO:0003700 ... P06536 1865905
    4506 1glu:B (2.9) BS03 ZN ? GO:0003700 ... P06536 1865905
    4507 1glu:B (2.9) BS04 ZN ? GO:0003700 ... P06536 1865905
    4508 1gm7:B (1.45) BS01 CA 3.5.1.11 GO:0016787 ... P06875 11601852
    4509 1gm8:B (2.0) BS01 CA 3.5.1.11 GO:0016787 ... P06875 11601852
    4510 1gm9:B (1.8) BS10 CA 3.5.1.11 GO:0016787 ... P06875 11601852
    4511 1gmm:A (2.0) BS01 CA 3.2.1.8 GO:0030246 ... O52780 11673472
    4512 1gmw:A (1.5) BS01 CU ? GO:0005737 ... P18317 11591723
    4513 1gmw:B (1.5) BS01 CU ? GO:0005737 ... P18317 11591723
    4514 1gmw:C (1.5) BS01 CU ? GO:0005737 ... P18317 11591723
    4515 1gmw:D (1.5) BS01 CU ? GO:0005737 ... P18317 11591723
    4516 1gn1:F (2.8) BS01 CA ? GO:0005524 ... P80318 12083524
    4517 1gn1:H (2.8) BS01 CA ? GO:0005524 ... P80318 12083524
    4518 1gn2:A (3.4) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 11747311
    4519 1gn2:B (3.4) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 11747311
    4520 1gn2:C (3.4) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 11747311
    4521 1gn2:D (3.4) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 11747311
    4522 1gn2:E (3.4) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 11747311
    4523 1gn2:F (3.4) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 11747311
    4524 1gn2:G (3.4) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 11747311
    4525 1gn2:H (3.4) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 11747311
    4526 1gn3:A (4.0) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 9490054
    4527 1gn3:B (4.0) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 9490054
    4528 1gn4:A (2.5) BS01 MN 1.15.1.1 GO:0004784 ... P9WGE7 9490054
    4529 1gn4:B (2.5) BS01 MN 1.15.1.1 GO:0004784 ... P9WGE7 9490054
    4530 1gn4:C (2.5) BS01 MN 1.15.1.1 GO:0004784 ... P9WGE7 9490054
    4531 1gn4:D (2.5) BS01 MN 1.15.1.1 GO:0004784 ... P9WGE7 9490054
    4532 1gn6:A (2.9) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 8674528
    4533 1gn6:B (2.9) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 8674528
    4534 1gn6:C (2.9) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 8674528
    4535 1gn6:D (2.9) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 8674528
    4536 1gnf:A (-1.00) BS01 ZN ? GO:0003700 ... P17679 10212985
    4537 1gnh:A (3.0) BS01 CA ? GO:0001849 ... P02741 8599761
    4538 1gnh:A (3.0) BS02 CA ? GO:0001849 ... P02741 8599761
    4539 1gnh:B (3.0) BS01 CA ? GO:0001849 ... P02741 8599761
    4540 1gnh:B (3.0) BS02 CA ? GO:0001849 ... P02741 8599761
    4541 1gnh:C (3.0) BS01 CA ? GO:0001849 ... P02741 8599761
    4542 1gnh:C (3.0) BS02 CA ? GO:0001849 ... P02741 8599761
    4543 1gnh:E (3.0) BS01 CA ? GO:0001849 ... P02741 8599761
    4544 1gnh:E (3.0) BS02 CA ? GO:0001849 ... P02741 8599761
    4545 1gnh:F (3.0) BS01 CA ? GO:0001849 ... P02741 8599761
    4546 1gnh:F (3.0) BS02 CA ? GO:0001849 ... P02741 8599761
    4547 1gnh:G (3.0) BS01 CA ? GO:0001849 ... P02741 8599761
    4548 1gnh:G (3.0) BS02 CA ? GO:0001849 ... P02741 8599761
    4549 1gnh:H (3.0) BS01 CA ? GO:0001849 ... P02741 8599761
    4550 1gnh:H (3.0) BS02 CA ? GO:0001849 ... P02741 8599761
    4551 1gnh:I (3.0) BS01 CA ? GO:0001849 ... P02741 8599761
    4552 1gnh:I (3.0) BS02 CA ? GO:0001849 ... P02741 8599761
    4553 1gnp:A (2.7) BS01 MG 3.6.5.2 GO:0003924 ... P01112 7473708
    4554 1gnq:A (2.5) BS01 MG 3.6.5.2 GO:0003924 ... P01112 7473708
    4555 1gnr:A (1.85) BS01 MG 3.6.5.2 GO:0003924 ... P01112 7473708
    4556 1go7:P (2.1) BS01 CA 3.4.24.40 GO:0004222 ... P16317 11445573
    4557 1go7:P (2.1) BS02 CA 3.4.24.40 GO:0004222 ... P16317 11445573
    4558 1go7:P (2.1) BS03 CA 3.4.24.40 GO:0004222 ... P16317 11445573
    4559 1go7:P (2.1) BS04 CA 3.4.24.40 GO:0004222 ... P16317 11445573
    4560 1go7:P (2.1) BS05 CA 3.4.24.40 GO:0004222 ... P16317 11445573
    4561 1go7:P (2.1) BS06 ZN 3.4.24.40 GO:0004222 ... P16317 11445573
    4562 1go7:P (2.1) BS07 CA 3.4.24.40 GO:0004222 ... P16317 11445573
    4563 1go7:P (2.1) BS08 CA 3.4.24.40 GO:0004222 ... P16317 11445573
    4564 1go8:P (2.0) BS01 CA 3.4.24.40 GO:0004222 ... P16317 11445573
    4565 1go8:P (2.0) BS02 CA 3.4.24.40 GO:0004222 ... P16317 11445573
    4566 1go8:P (2.0) BS03 CA 3.4.24.40 GO:0004222 ... P16317 11445573
    4567 1go8:P (2.0) BS04 CA 3.4.24.40 GO:0004222 ... P16317 11445573
    4568 1go8:P (2.0) BS05 CA 3.4.24.40 GO:0004222 ... P16317 11445573
    4569 1go8:P (2.0) BS06 CA 3.4.24.40 GO:0004222 ... P16317 11445573
    4570 1go8:P (2.0) BS07 ZN 3.4.24.40 GO:0004222 ... P16317 11445573
    4571 1go8:P (2.0) BS08 CA 3.4.24.40 GO:0004222 ... P16317 11445573
    4572 1gof:A (1.7) BS01 CU 1.1.3.9 GO:0005576 ... P0CS93 2002850
    4573 1gog:A (1.9) BS01 CU 1.1.3.9 GO:0005576 ... P0CS93 2002850
    4574 1gol:A (2.8) BS01 MG 2.7.11.24 GO:0000165 ... P63086 8639522
    4575 1gp5:A (2.2) BS04 FE 1.14.20.4 GO:0007033 ... Q96323 11796114
    4576 1gp6:A (1.75) BS03 FE2 1.14.20.4 GO:0007033 ... Q96323 11796114
    4577 1gp7:A (2.6) BS01 CA 3.1.1.4 GO:0004623 ... P80966 12217659
    4578 1gp7:B (2.6) BS01 CA 3.1.1.4 GO:0004623 ... P80966 12217659
    4579 1gp7:C (2.6) BS01 CA 3.1.1.4 GO:0004623 ... P80966 12217659
    4580 1gpc:A (2.2) BS01 ZN ? GO:0003697 ... P03695 7630406
    4581 1gpl:A (2.01) BS01 CA 3.1.1.26
    3.1.1.3
    GO:0004806 ... P16233
    P81139
    8939760
    4582 1gpu:A (1.86) BS01 CA 2.2.1.1 GO:0003824 ... P23254 11773632
    4583 1gpu:B (1.86) BS02 CA 2.2.1.1 GO:0003824 ... P23254 11773632
    4584 1gpx:A (-1.00) BS01 GA ? GO:0005515 ... P00259 9835048
    4585 1gq2:A (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    4586 1gq2:B (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    4587 1gq2:C (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    4588 1gq2:D (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    4589 1gq2:E (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    4590 1gq2:F (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    4591 1gq2:G (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    4592 1gq2:H (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    4593 1gq2:I (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    4594 1gq2:J (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    4595 1gq2:K (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    4596 1gq2:L (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    4597 1gq2:M (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    4598 1gq2:N (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    4599 1gq2:O (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    4600 1gq2:P (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218