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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4001 1fyz:B (2.15) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    4002 1fz0:A (2.07) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    4003 1fz0:A (2.07) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    4004 1fz0:B (2.07) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    4005 1fz0:B (2.07) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    4006 1fz0:C (2.07) BS01 CA 1.14.13.25 GO:0004497 ... P18798 11456616
    4007 1fz1:A (1.96) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    4008 1fz1:A (1.96) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    4009 1fz1:B (1.96) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    4010 1fz1:B (1.96) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    4011 1fz1:C (1.96) BS01 CA 1.14.13.25 GO:0004497 ... P18798 11456616
    4012 1fz2:A (2.15) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    4013 1fz2:A (2.15) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    4014 1fz2:B (2.15) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    4015 1fz2:B (2.15) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    4016 1fz2:C (2.15) BS01 CA 1.14.13.25 GO:0004497 ... P18798 11456616
    4017 1fz3:A (2.03) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    4018 1fz3:A (2.03) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    4019 1fz3:B (2.03) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    4020 1fz3:B (2.03) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    4021 1fz4:A (2.38) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    4022 1fz4:A (2.38) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    4023 1fz4:B (2.38) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    4024 1fz4:B (2.38) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    4025 1fz5:A (2.4) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    4026 1fz5:B (2.4) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    4027 1fz6:A (2.05) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    4028 1fz6:A (2.05) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    4029 1fz6:B (2.05) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    4030 1fz6:B (2.05) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    4031 1fz6:B (2.05) BS03 CA 1.14.13.25 GO:0004497 ... P22869 11456795
    4032 1fz7:A (1.96) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    4033 1fz7:A (1.96) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    4034 1fz7:B (1.96) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    4035 1fz7:B (1.96) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    4036 1fz8:A (2.1) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    4037 1fz8:A (2.1) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    4038 1fz8:B (2.1) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    4039 1fz8:B (2.1) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    4040 1fz8:C (2.1) BS01 CA 1.14.13.25 GO:0004497 ... P18798 11297413
    4041 1fz9:A (2.3) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    4042 1fz9:A (2.3) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    4043 1fz9:B (2.3) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    4044 1fz9:B (2.3) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    4045 1fza:C (2.9) BS01 CA ? GO:0005102 ... P02679 9333233
    4046 1fza:F (2.9) BS01 CA ? GO:0005102 ... P02679 9333233
    4047 1fzb:C (2.9) BS02 CA ? GO:0005102 ... P02679 9333233
    4048 1fzb:F (2.9) BS02 CA ? GO:0005102 ... P02679 9333233
    4049 1fzc:B (2.3) BS02 CA ? GO:0005102 ... P02675 9628725
    4050 1fzc:C (2.3) BS02 CA ? GO:0005102 ... P02679 9628725
    4051 1fzc:E (2.3) BS02 CA ? GO:0005102 ... P02675 9628725
    4052 1fzc:F (2.3) BS02 CA ? GO:0005102 ... P02679 9628725
    4053 1fzd:A (2.1) BS01 CA ? GO:0007596 ... P02671 9689040
    4054 1fzd:B (2.1) BS01 CA ? GO:0007596 ... P02671 9689040
    4055 1fzd:C (2.1) BS01 CA ? GO:0007596 ... P02671 9689040
    4056 1fzd:D (2.1) BS01 CA ? GO:0007596 ... P02671 9689040
    4057 1fzd:E (2.1) BS01 CA ? GO:0007596 ... P02671 9689040
    4058 1fzd:F (2.1) BS01 CA ? GO:0007596 ... P02671 9689040
    4059 1fzd:G (2.1) BS01 CA ? GO:0007596 ... P02671 9689040
    4060 1fzd:H (2.1) BS01 CA ? GO:0007596 ... P02671 9689040
    4061 1fze:B (3.0) BS01 CA ? GO:0005102 ... P02675 10074346
    4062 1fze:B (3.0) BS02 CA ? GO:0005102 ... P02675 10074346
    4063 1fze:C (3.0) BS01 CA ? GO:0005102 ... P02679 10074346
    4064 1fze:E (3.0) BS01 CA ? GO:0005102 ... P02675 10074346
    4065 1fze:E (3.0) BS02 CA ? GO:0005102 ... P02675 10074346
    4066 1fze:F (3.0) BS01 CA ? GO:0005102 ... P02679 10074346
    4067 1fzf:B (2.7) BS02 CA ? GO:0005102 ... P02675 10074346
    4068 1fzf:C (2.7) BS02 CA ? GO:0005102 ... P02679 10074346
    4069 1fzf:C (2.7) BS03 CA ? GO:0005102 ... P02679 10074346
    4070 1fzf:E (2.7) BS02 CA ? GO:0005102 ... P02675 10074346
    4071 1fzf:E (2.7) BS03 CA ? GO:0005102 ... P02675 10074346
    4072 1fzf:F (2.7) BS02 CA ? GO:0005102 ... P02679 10074346
    4073 1fzg:B (2.5) BS02 CA ? GO:0005102 ... P02675 10074346
    4074 1fzg:B (2.5) BS03 CA ? GO:0005102 ... P02675 10074346
    4075 1fzg:C (2.5) BS02 CA ? GO:0005102 ... P02679 10074346
    4076 1fzg:C (2.5) BS03 CA ? GO:0005102 ... P02679 10074346
    4077 1fzg:E (2.5) BS02 CA ? GO:0005102 ... P02675 10074346
    4078 1fzg:E (2.5) BS03 CA ? GO:0005102 ... P02675 10074346
    4079 1fzg:F (2.5) BS02 CA ? GO:0005102 ... P02679 10074346
    4080 1fzg:F (2.5) BS03 CA ? GO:0005102 ... P02679 10074346
    4081 1fzh:A (2.6) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    4082 1fzh:A (2.6) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    4083 1fzh:B (2.6) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    4084 1fzh:B (2.6) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    4085 1fzh:B (2.6) BS03 CA 1.14.13.25 GO:0004497 ... P22869 11297413
    4086 1fzi:A (3.3) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    4087 1fzi:A (3.3) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    4088 1fzi:B (3.3) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    4089 1fzi:B (3.3) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    4090 1g05:A (2.45) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 11327577
    4091 1g05:A (2.45) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 11327577
    4092 1g05:A (2.45) BS03 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    4093 1g05:A (2.45) BS04 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    4094 1g05:A (2.45) BS05 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    4095 1g05:B (2.45) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 11327577
    4096 1g05:B (2.45) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 11327577
    4097 1g05:B (2.45) BS03 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    4098 1g05:B (2.45) BS04 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    4099 1g05:B (2.45) BS05 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    4100 1g0e:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11327835
    4101 1g0f:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11327835
    4102 1g0h:A (2.3) BS01 CA 3.1.3.11
    3.1.3.25    		 GO:0006020 ... Q57573 11170378
    4103 1g0h:A (2.3) BS02 CA 3.1.3.11
    3.1.3.25    		 GO:0006020 ... Q57573 11170378
    4104 1g0h:B (2.3) BS01 CA 3.1.3.11
    3.1.3.25    		 GO:0006020 ... Q57573 11170378
    4105 1g0h:B (2.3) BS02 CA 3.1.3.11
    3.1.3.25    		 GO:0006020 ... Q57573 11170378
    4106 1g0i:A (2.4) BS01 MN 3.1.3.11
    3.1.3.25    		 GO:0006020 ... Q57573 11170378
    4107 1g0i:A (2.4) BS02 MN 3.1.3.11
    3.1.3.25    		 GO:0006020 ... Q57573 11170378
    4108 1g0i:A (2.4) BS03 MN 3.1.3.11
    3.1.3.25    		 GO:0006020 ... Q57573 11170378
    4109 1g0i:B (2.4) BS01 MN 3.1.3.11
    3.1.3.25    		 GO:0006020 ... Q57573 11170378
    4110 1g0i:B (2.4) BS02 MN 3.1.3.11
    3.1.3.25    		 GO:0006020 ... Q57573 11170378
    4111 1g0i:B (2.4) BS03 MN 3.1.3.11
    3.1.3.25    		 GO:0006020 ... Q57573 11170378
    4112 1g0u:2 (2.4) BS01 MG 3.4.25.1 GO:0000502 ... P38624 11062564
    4113 1g0u:G (2.4) BS01 MG 3.4.99.46 GO:0000502 ... P21243 11062564
    4114 1g0u:G (2.4) BS02 MG 3.4.99.46 GO:0000502 ... P21243 11062564
    4115 1g0u:H (2.4) BS01 MG 3.4.25.1 GO:0004298 ... P25043 11062564
    4116 1g0u:I (2.4) BS01 MG 3.4.99.46 GO:0000502 ... P25451 11062564
    4117 1g0u:K (2.4) BS01 MG 3.4.25.1 GO:0004298 ... P30656 11062564
    4118 1g0u:L (2.4) BS01 MG 3.4.99.46 GO:0000502 ... P23724 11062564
    4119 1g0u:L (2.4) BS02 MG 3.4.99.46 GO:0000502 ... P23724 11062564
    4120 1g0u:N (2.4) BS01 MG 3.4.25.1 GO:0000502 ... P38624 11062564
    4121 1g0u:U (2.4) BS01 MG 3.4.99.46 GO:0000502 ... P21243 11062564
    4122 1g0u:U (2.4) BS02 MG 3.4.99.46 GO:0000502 ... P21243 11062564
    4123 1g0u:V (2.4) BS01 MG 3.4.25.1 GO:0004298 ... P25043 11062564
    4124 1g0u:W (2.4) BS01 MG 3.4.99.46 GO:0000502 ... P25451 11062564
    4125 1g0u:Y (2.4) BS01 MG 3.4.25.1 GO:0004298 ... P30656 11062564
    4126 1g0u:Z (2.4) BS01 MG 3.4.99.46 GO:0000502 ... P23724 11062564
    4127 1g0u:Z (2.4) BS02 MG 3.4.99.46 GO:0000502 ... P23724 11062564
    4128 1g12:A (1.6) BS02 ZN 3.4.24.20 GO:0004222 ... P81054 11223512
    4129 1g15:A (1.9) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 11083878
    4130 1g15:A (1.9) BS02 MN 3.1.26.4 GO:0000287 ... P0A7Y4 11083878
    4131 1g16:A (1.8) BS01 CO ? GO:0003924 ... P07560 11099382
    4132 1g16:D (1.8) BS01 CO ? GO:0003924 ... P07560 11099382
    4133 1g17:A (2.0) BS01 MG ? GO:0003924 ... P07560 11099382
    4134 1g17:B (2.0) BS01 MG ? GO:0003924 ... P07560 11099382
    4135 1g1d:A (2.04) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    4136 1g1i:A (2.0) BS01 CA ? N/A P04512 11124032
    4137 1g1j:B (1.86) BS01 SR ? N/A P04512 11124032
    4138 1g1q:A (2.4) BS01 CA ? N/A P16109 11081633
    4139 1g1q:B (2.4) BS01 CA ? N/A P16109 11081633
    4140 1g1q:C (2.4) BS01 CA ? N/A P16109 11081633
    4141 1g1q:D (2.4) BS01 CA ? N/A P16109 11081633
    4142 1g1r:A (3.4) BS03 CA ? N/A P16109 11081633
    4143 1g1r:B (3.4) BS04 CA ? N/A P16109 11081633
    4144 1g1r:C (3.4) BS01 CA ? N/A P16109 11081633
    4145 1g1r:D (3.4) BS03 CA ? N/A P16109 11081633
    4146 1g1t:A (1.5) BS04 CA ? N/A P16581 11081633
    4147 1g20:B (2.2) BS01 CA 1.18.6.1 GO:0005524 ... P07329 11170380
    4148 1g20:B (2.2) BS03 CA 1.18.6.1 GO:0005524 ... P07329 11170380
    4149 1g20:D (2.2) BS01 CA 1.18.6.1 GO:0005524 ... P07329 11170380
    4150 1g20:D (2.2) BS02 CA 1.18.6.1 GO:0005524 ... P07329 11170380
    4151 1g21:B (3.0) BS02 CA 1.18.6.1 GO:0005524 ... P07329 11170380
    4152 1g21:B (3.0) BS03 CA 1.18.6.1 GO:0005524 ... P07329 11170380
    4153 1g21:D (3.0) BS01 CA 1.18.6.1 GO:0005524 ... P07329 11170380
    4154 1g21:D (3.0) BS02 CA 1.18.6.1 GO:0005524 ... P07329 11170380
    4155 1g21:E (3.0) BS01 MG 1.18.6.1 GO:0005524 ... P00459 11170380
    4156 1g21:G (3.0) BS03 MG 1.18.6.1 GO:0005524 ... P00459 11170380
    4157 1g25:A (-1.00) BS01 ZN ? N/A P51948 11056162
    4158 1g25:A (-1.00) BS02 ZN ? N/A P51948 11056162
    4159 1g29:1 (1.9) BS01 MG 7.5.2.1 GO:0005524 ... Q9YGA6 11080142
    4160 1g29:1 (1.9) BS02 MG 7.5.2.1 GO:0005524 ... Q9YGA6 11080142
    4161 1g29:1 (1.9) BS04 MG 7.5.2.1 GO:0005524 ... Q9YGA6 11080142
    4162 1g29:2 (1.9) BS01 MG 7.5.2.1 GO:0005524 ... Q9YGA6 11080142
    4163 1g29:2 (1.9) BS02 MG 7.5.2.1 GO:0005524 ... Q9YGA6 11080142
    4164 1g29:2 (1.9) BS03 MG 7.5.2.1 GO:0005524 ... Q9YGA6 11080142
    4165 1g29:2 (1.9) BS04 MG 7.5.2.1 GO:0005524 ... Q9YGA6 11080142
    4166 1g2d:C (2.2) BS03 ZN ? N/A P08046 11587646
    4167 1g2d:C (2.2) BS04 ZN ? N/A P08046 11587646
    4168 1g2d:C (2.2) BS05 ZN ? N/A P08046 11587646
    4169 1g2d:F (2.2) BS03 ZN ? N/A P08046 11587646
    4170 1g2d:F (2.2) BS04 ZN ? N/A P08046 11587646
    4171 1g2d:F (2.2) BS05 ZN ? N/A P08046 11587646
    4172 1g2f:C (2.0) BS03 ZN ? N/A P08046 11587646
    4173 1g2f:C (2.0) BS04 ZN ? N/A P08046 11587646
    4174 1g2f:C (2.0) BS05 ZN ? N/A P08046 11587646
    4175 1g2f:F (2.0) BS03 ZN ? N/A P08046 11587646
    4176 1g2f:F (2.0) BS04 ZN ? N/A P08046 11587646
    4177 1g2f:F (2.0) BS05 ZN ? N/A P08046 11587646
    4178 1g2l:A (1.9) BS01 CA 3.4.21.6 GO:0004252 ... P00742 11342132
    4179 1g2m:A (3.02) BS01 CA 3.4.21.6 GO:0004252 ... P00742 11342132
    4180 1g33:A (1.44) BS01 CA ? GO:0005509 ... P02625 11562941
    4181 1g33:A (1.44) BS02 CA ? GO:0005509 ... P02625 11562941
    4182 1g36:A (1.9) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11342132
    4183 1g3b:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11152605
    4184 1g3c:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11152605
    4185 1g3d:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11152605
    4186 1g3e:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11152605
    4187 1g3f:A (-1.00) BS02 ZN 2.3.2.27 N/A P98170 11140637
    4188 1g3u:A (1.95) BS01 MG 2.7.4.9 GO:0000287 ... P9WKE1 11469859
    4189 1g3y:A (2.8) BS01 ZN ? GO:0003677 ... P0DJL7 11320302
    4190 1g3z:A (1.86) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    4191 1g42:A (1.8) BS01 CA 3.8.1.5 GO:0003824 ... D4Z2G1 11939779
    4192 1g42:A (1.8) BS02 CA 3.8.1.5 GO:0003824 ... D4Z2G1 11939779
    4193 1g43:A (2.2) BS01 CA ? GO:0005975 ... Q45996 11092922
    4194 1g45:A (1.83) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    4195 1g46:A (1.84) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    4196 1g47:A (-1.00) BS01 ZN ? N/A P48059 11078733
    4197 1g47:A (-1.00) BS02 ZN ? N/A P48059 11078733
    4198 1g48:A (1.86) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    4199 1g49:A (1.9) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 11150165
    4200 1g49:A (1.9) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 11150165
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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