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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3801 1fpj:A (2.2) BS01 TL 3.1.3.11 GO:0005737 ... P00636 7568043
    3802 1fpj:B (2.2) BS01 TL 3.1.3.11 GO:0005737 ... P00636 7568043
    3803 1fpk:A (3.0) BS01 TL 3.1.3.11 GO:0005737 ... P00636 7568043
    3804 1fpk:A (3.0) BS02 TL 3.1.3.11 GO:0005737 ... P00636 7568043
    3805 1fpk:B (3.0) BS01 TL 3.1.3.11 GO:0005737 ... P00636 7568043
    3806 1fpk:B (3.0) BS02 TL 3.1.3.11 GO:0005737 ... P00636 7568043
    3807 1fpl:A (2.3) BS01 TL 3.1.3.11 GO:0005737 ... P00636 7568043
    3808 1fpl:A (2.3) BS02 TL 3.1.3.11 GO:0005737 ... P00636 7568043
    3809 1fpl:A (2.3) BS03 TL 3.1.3.11 GO:0005737 ... P00636 7568043
    3810 1fpl:B (2.3) BS01 TL 3.1.3.11 GO:0005737 ... P00636 7568043
    3811 1fpl:B (2.3) BS02 TL 3.1.3.11 GO:0005737 ... P00636 7568043
    3812 1fpl:B (2.3) BS03 TL 3.1.3.11 GO:0005737 ... P00636 7568043
    3813 1fpm:A (3.0) BS01 CS 6.3.4.3 GO:0004329 ... P21164 11087401
    3814 1fpm:B (3.0) BS01 CS 6.3.4.3 GO:0004329 ... P21164 11087401
    3815 1fpp:B (2.75) BS01 ZN 2.5.1.58 GO:0003824 ... Q02293 9609683
    3816 1fpw:A (-1.00) BS01 CA ? GO:0000139 ... Q06389 11015193
    3817 1fpw:A (-1.00) BS02 CA ? GO:0000139 ... Q06389 11015193
    3818 1fpw:A (-1.00) BS03 CA ? GO:0000139 ... Q06389 11015193
    3819 1fpy:A (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3820 1fpy:A (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3821 1fpy:B (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3822 1fpy:B (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3823 1fpy:C (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3824 1fpy:C (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3825 1fpy:D (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3826 1fpy:D (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3827 1fpy:E (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3828 1fpy:E (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3829 1fpy:F (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3830 1fpy:F (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3831 1fpy:G (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3832 1fpy:G (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3833 1fpy:H (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3834 1fpy:H (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3835 1fpy:I (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3836 1fpy:I (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3837 1fpy:J (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3838 1fpy:J (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3839 1fpy:K (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3840 1fpy:K (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3841 1fpy:L (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3842 1fpy:L (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3843 1fq1:B (3.0) BS01 MG 2.7.11.22 GO:0000082 ... P24941 11463386
    3844 1fqe:A (1.8) BS01 FE ? GO:0005576 ... P02787 11327820
    3845 1fqf:A (2.1) BS01 FE ? GO:0005576 ... P02787 11327820
    3846 1fqj:A (2.02) BS01 MG ? GO:0003924 ... P04695
    P10824
    11234020
    3847 1fqj:D (2.02) BS01 MG ? GO:0003924 ... P04695
    P10824
    11234020
    3848 1fqk:A (2.3) BS01 MG ? GO:0003924 ... P04695
    P10824
    11234020
    3849 1fqk:C (2.3) BS01 MG ? GO:0003924 ... P04695
    P10824
    11234020
    3850 1fql:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11076507
    3851 1fqm:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11076507
    3852 1fqr:A (2.0) BS01 CO 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11076507
    3853 1fqw:A (2.37) BS01 MN ? GO:0000156 ... P0AE67 11279165
    3854 1fqw:B (2.37) BS01 MN ? GO:0000156 ... P0AE67 11279165
    3855 1fr2:B (1.6) BS01 ZN 3.1.-.- GO:0004519 ... P09883 N/A
    3856 1fr4:A (1.6) BS01 CU 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11076507
    3857 1fr7:A (1.5) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11076507
    3858 1fr7:B (1.5) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11076507
    3859 1fre:A (-1.00) BS01 ZN ? GO:0008270 ... Q92021 8846787
    3860 1frf:L (2.7) BS01 FE 1.12.2.1 GO:0008901 ... P18188 9751716
    3861 1frf:L (2.7) BS02 MG 1.12.2.1 GO:0008901 ... P18188 9751716
    3862 1fro:A (2.2) BS01 ZN 4.4.1.5 GO:0004462 ... Q04760 9218781
    3863 1fro:A (2.2) BS03 ZN 4.4.1.5 GO:0004462 ... Q04760 9218781
    3864 1fro:B (2.2) BS01 ZN 4.4.1.5 GO:0004462 ... Q04760 9218781
    3865 1fro:B (2.2) BS03 ZN 4.4.1.5 GO:0004462 ... Q04760 9218781
    3866 1fro:C (2.2) BS01 ZN 4.4.1.5 GO:0004462 ... Q04760 9218781
    3867 1fro:C (2.2) BS03 ZN 4.4.1.5 GO:0004462 ... Q04760 9218781
    3868 1fro:D (2.2) BS01 ZN 4.4.1.5 GO:0004462 ... Q04760 9218781
    3869 1fro:D (2.2) BS03 ZN 4.4.1.5 GO:0004462 ... Q04760 9218781
    3870 1frp:A (2.0) BS02 ZN 3.1.3.11 GO:0005737 ... P00636 7809062
    3871 1frp:B (2.0) BS02 ZN 3.1.3.11 GO:0005737 ... P00636 7809062
    3872 1frv:B (2.85) BS01 NI 1.12.2.1 GO:0008901 ... P12944 7854413
    3873 1frv:D (2.85) BS02 NI 1.12.2.1 GO:0008901 ... P12944 7854413
    3874 1frw:A (1.75) BS01 MN 2.7.7.77 GO:0000287 ... P32173 10978347
    3875 1fs7:A (1.6) BS01 CA 1.7.2.2 GO:0005509 ... Q9S1E5 10984487
    3876 1fs8:A (1.6) BS01 CA 1.7.2.2 GO:0005509 ... Q9S1E5 10984487
    3877 1fs9:A (2.0) BS01 CA 1.7.2.2 GO:0005509 ... Q9S1E5 10984487
    3878 1fsa:A (2.3) BS02 MN 3.1.3.11 GO:0005737 ... P00636 8931152
    3879 1fsa:B (2.3) BS02 MN 3.1.3.11 GO:0005737 ... P00636 8931152
    3880 1fsj:B (1.8) BS01 ZN 3.1.-.- GO:0004519 ... P09883 N/A
    3881 1fsj:C (1.8) BS01 ZN 3.1.-.- GO:0004519 ... P09883 N/A
    3882 1fsj:D (1.8) BS01 ZN 3.1.-.- GO:0004519 ... P09883 N/A
    3883 1fsj:E (1.8) BS01 ZN 3.1.-.- GO:0004519 ... P09883 N/A
    3884 1fsq:A (2.0) BS01 CO 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11076507
    3885 1fsq:B (2.0) BS01 CO 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11076507
    3886 1fsr:A (2.0) BS01 CU 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11076507
    3887 1fsr:B (2.0) BS01 CU 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11076507
    3888 1fsu:A (2.5) BS01 CA 3.1.6.12 GO:0003943 ... P15848 9032078
    3889 1ft1:B (2.25) BS01 ZN 2.5.1.58 GO:0003824 ... Q02293 9065406
    3890 1ft2:B (3.4) BS01 ZN 2.5.1.58 GO:0003824 ... Q02293 9657673
    3891 1ft7:A (2.2) BS01 ZN 3.4.11.10 GO:0006508 ... Q01693 11401547
    3892 1ft7:A (2.2) BS02 ZN 3.4.11.10 GO:0006508 ... Q01693 11401547
    3893 1ftj:A (1.9) BS01 ZN ? GO:0015276 ... P19491 11086992
    3894 1ftj:B (1.9) BS01 ZN ? GO:0015276 ... P19491 11086992
    3895 1ftj:B (1.9) BS02 ZN ? GO:0015276 ... P19491 11086992
    3896 1ftj:C (1.9) BS01 ZN ? GO:0015276 ... P19491 11086992
    3897 1ftm:A (1.7) BS01 ZN ? GO:0015276 ... P19491 11086992
    3898 1ftm:B (1.7) BS01 ZN ? GO:0015276 ... P19491 11086992
    3899 1ftm:B (1.7) BS02 ZN ? GO:0015276 ... P19491 11086992
    3900 1ftm:C (1.7) BS01 ZN ? GO:0015276 ... P19491 11086992
    3901 1ftn:A (2.1) BS01 MG 3.6.5.2 GO:0000902 ... P61586 9302995
    3902 1fu9:A (-1.00) BS01 ZN ? GO:0006357 ... Q9VPQ6 11080638
    3903 1fua:A (1.92) BS01 ZN 4.1.2.17 GO:0005829 ... P0AB87 15299567
    3904 1fui:A (2.5) BS01 MN 5.3.1.25
    5.3.1.3
    GO:0005737 ... P69922 9367760
    3905 1fui:B (2.5) BS01 MN 5.3.1.25
    5.3.1.3
    GO:0005737 ... P69922 9367760
    3906 1fui:C (2.5) BS01 MN 5.3.1.25
    5.3.1.3
    GO:0005737 ... P69922 9367760
    3907 1fui:D (2.5) BS01 MN 5.3.1.25
    5.3.1.3
    GO:0005737 ... P69922 9367760
    3908 1fui:E (2.5) BS01 MN 5.3.1.25
    5.3.1.3
    GO:0005737 ... P69922 9367760
    3909 1fuk:A (1.75) BS01 ZN 3.6.4.13 N/A P10081 11087862
    3910 1fun:A (2.85) BS01 CU 1.15.1.1 GO:0000302 ... P00441 9294870
    3911 1fun:A (2.85) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 9294870
    3912 1fun:B (2.85) BS01 CU 1.15.1.1 GO:0000302 ... P00441 9294870
    3913 1fun:B (2.85) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 9294870
    3914 1fun:C (2.85) BS01 CU 1.15.1.1 GO:0000302 ... P00441 9294870
    3915 1fun:C (2.85) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 9294870
    3916 1fun:D (2.85) BS01 CU 1.15.1.1 GO:0000302 ... P00441 9294870
    3917 1fun:D (2.85) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 9294870
    3918 1fun:E (2.85) BS01 CU 1.15.1.1 GO:0000302 ... P00441 9294870
    3919 1fun:E (2.85) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 9294870
    3920 1fun:F (2.85) BS01 CU 1.15.1.1 GO:0000302 ... P00441 9294870
    3921 1fun:F (2.85) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 9294870
    3922 1fun:G (2.85) BS01 CU 1.15.1.1 GO:0000302 ... P00441 9294870
    3923 1fun:G (2.85) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 9294870
    3924 1fun:H (2.85) BS01 CU 1.15.1.1 GO:0000302 ... P00441 9294870
    3925 1fun:H (2.85) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 9294870
    3926 1fun:I (2.85) BS01 CU 1.15.1.1 GO:0000302 ... P00441 9294870
    3927 1fun:I (2.85) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 9294870
    3928 1fun:J (2.85) BS01 CU 1.15.1.1 GO:0000302 ... P00441 9294870
    3929 1fun:J (2.85) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 9294870
    3930 1fv5:A (-1.00) BS01 ZN ? GO:0006357 ... Q9VPQ6 11080638
    3931 1fvs:A (-1.00) BS01 CU 7.2.2.8 GO:0046872 ... P38995 11083871
    3932 1fvu:B (1.8) BS01 MG ? GO:0005576 ... P22030 11148028
    3933 1fvu:D (1.8) BS01 MG ? GO:0005576 ... P22030 11148028
    3934 1fw2:A (2.6) BS01 CA 3.1.1.32
    3.1.1.4
    GO:0004620 ... P0A921 11371166
    3935 1fw4:A (1.7) BS01 CA ? GO:0005509 ... P62157 11320306
    3936 1fw4:A (1.7) BS02 CA ? GO:0005509 ... P62157 11320306
    3937 1fwa:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    3938 1fwa:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    3939 1fwb:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    3940 1fwb:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    3941 1fwc:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    3942 1fwc:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    3943 1fwd:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    3944 1fwd:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    3945 1fwe:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    3946 1fwe:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    3947 1fwf:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    3948 1fwf:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    3949 1fwg:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    3950 1fwg:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    3951 1fwh:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    3952 1fwh:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    3953 1fwi:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 8702515
    3954 1fwj:C (2.2) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    3955 1fwj:C (2.2) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    3956 1fwq:A (-1.00) BS01 ZN ? GO:0005085 ... P47224 7651540
    3957 1fwx:A (1.6) BS01 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    3958 1fwx:A (1.6) BS02 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    3959 1fwx:B (1.6) BS01 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    3960 1fwx:B (1.6) BS02 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    3961 1fwx:C (1.6) BS01 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    3962 1fwx:C (1.6) BS02 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    3963 1fwx:C (1.6) BS03 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    3964 1fwx:D (1.6) BS01 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    3965 1fwx:D (1.6) BS02 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    3966 1fwz:A (2.3) BS02 ZN ? GO:0003677 ... P0DJL7 11320302
    3967 1fx4:A (1.9) BS01 MG 4.6.1.1 GO:0009190 ... Q99280 11157750
    3968 1fx5:A (2.2) BS01 MN ? GO:0030246 ... P22972 11090284
    3969 1fx5:A (2.2) BS02 CA ? GO:0030246 ... P22972 11090284
    3970 1fx5:B (2.2) BS01 MN ? GO:0030246 ... P22972 11090284
    3971 1fx5:B (2.2) BS02 CA ? GO:0030246 ... P22972 11090284
    3972 1fx7:A (2.0) BS01 CO ? GO:0003677 ... P9WMH1 11053439
    3973 1fx7:A (2.0) BS02 CO ? GO:0003677 ... P9WMH1 11053439
    3974 1fx7:A (2.0) BS03 CO ? GO:0003677 ... P9WMH1 11053439
    3975 1fx7:B (2.0) BS01 CO ? GO:0003677 ... P9WMH1 11053439
    3976 1fx7:B (2.0) BS02 CO ? GO:0003677 ... P9WMH1 11053439
    3977 1fx7:B (2.0) BS03 CO ? GO:0003677 ... P9WMH1 11053439
    3978 1fx7:C (2.0) BS01 CO ? GO:0003677 ... P9WMH1 11053439
    3979 1fx7:C (2.0) BS02 CO ? GO:0003677 ... P9WMH1 11053439
    3980 1fx7:C (2.0) BS03 CO ? GO:0003677 ... P9WMH1 11053439
    3981 1fx7:D (2.0) BS01 CO ? GO:0003677 ... P9WMH1 11053439
    3982 1fx7:D (2.0) BS02 CO ? GO:0003677 ... P9WMH1 11053439
    3983 1fx7:D (2.0) BS03 CO ? GO:0003677 ... P9WMH1 11053439
    3984 1fx9:A (2.0) BS01 CA 3.1.1.4 GO:0002446 ... P00592 11170377
    3985 1fx9:B (2.0) BS02 CA 3.1.1.4 GO:0002446 ... P00592 11170377
    3986 1fxf:A (1.85) BS01 CA 3.1.1.4 GO:0002446 ... P00592 11170377
    3987 1fxf:B (1.85) BS02 CA 3.1.1.4 GO:0002446 ... P00592 11170377
    3988 1fxh:B (1.97) BS01 CA 3.5.1.11 GO:0016787 ... P06875 11239085
    3989 1fxv:B (2.25) BS02 CA 3.5.1.11 GO:0016787 ... P06875 11239085
    3990 1fxw:A (2.1) BS01 CA 3.1.1.47 GO:0003847 ... Q29460 11522926
    3991 1fy8:E (1.7) BS01 CA 3.4.21.4 GO:0004252 ... P00763 11420435
    3992 1fyf:A (1.65) BS01 ZN 6.1.1.3 GO:0000166 ... P0A8M3 11136973
    3993 1fyf:B (1.65) BS01 ZN 6.1.1.3 GO:0000166 ... P0A8M3 11136973
    3994 1fyu:A (2.6) BS02 MN ? GO:0030246 ... P16404 11274466
    3995 1fyu:A (2.6) BS03 CA ? GO:0030246 ... P16404 11274466
    3996 1fyu:B (2.6) BS02 MN ? GO:0030246 ... P16404 11274466
    3997 1fyu:B (2.6) BS03 CA ? GO:0030246 ... P16404 11274466
    3998 1fyz:A (2.15) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    3999 1fyz:A (2.15) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    4000 1fyz:B (2.15) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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