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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3601 1fe5:A (2.45) BS01 CA 3.1.1.4 GO:0004623 ... Q9DF52 11286555
    3602 1fez:A (3.0) BS01 MG 3.11.1.1 GO:0000287 ... O31156 10956028
    3603 1fez:B (3.0) BS02 MG 3.11.1.1 GO:0000287 ... O31156 10956028
    3604 1fez:C (3.0) BS01 MG 3.11.1.1 GO:0000287 ... O31156 10956028
    3605 1fez:D (3.0) BS02 MG 3.11.1.1 GO:0000287 ... O31156 10956028
    3606 1ff1:A (-1.00) BS02 CA ? GO:0005509 ... P42566 11062555
    3607 1ff5:A (2.93) BS01 CA ? GO:0005509 ... P09803 10202138
    3608 1ff5:A (2.93) BS02 CA ? GO:0005509 ... P09803 10202138
    3609 1ff5:A (2.93) BS03 CA ? GO:0005509 ... P09803 10202138
    3610 1ff5:B (2.93) BS01 CA ? GO:0005509 ... P09803 10202138
    3611 1ff5:B (2.93) BS02 CA ? GO:0005509 ... P09803 10202138
    3612 1ff5:B (2.93) BS03 CA ? GO:0005509 ... P09803 10202138
    3613 1ffg:A (2.1) BS01 MN ? GO:0000156 ... P0AE67 11134926
    3614 1ffg:C (2.1) BS01 MN ? GO:0000156 ... P0AE67 11134926
    3615 1ffs:A (2.4) BS01 MN 2.7.3.- GO:0000156 ... P0AE67 11134926
    3616 1ffs:C (2.4) BS01 MN 2.7.3.- GO:0000156 ... P0AE67 11134926
    3617 1fft:A (3.5) BS01 CU 7.1.1.3 GO:0004129 ... P0ABI8 11017202
    3618 1fft:F (3.5) BS01 CU 7.1.1.3 GO:0004129 ... P0ABI8 11017202
    3619 1ffw:A (2.7) BS01 MN ? GO:0000156 ... P0AE67 11134926
    3620 1ffw:C (2.7) BS01 MN ? GO:0000156 ... P0AE67 11134926
    3621 1ffy:A (2.2) BS02 ZN 6.1.1.5 GO:0000049 ... P41972 10446055
    3622 1fgg:A (2.3) BS03 MN 2.4.1.135 GO:0015018 ... O94766 10946001
    3623 1fgg:B (2.3) BS01 MN 2.4.1.135 GO:0015018 ... O94766 10946001
    3624 1fgm:A (1.9) BS01 FE 1.13.11.12 GO:0005506 ... P08170 11412104
    3625 1fgo:A (1.62) BS01 FE 1.13.11.12 GO:0005506 ... P08170 11412104
    3626 1fgq:A (1.85) BS01 FE 1.13.11.12 GO:0005506 ... P08170 11412104
    3627 1fgr:A (1.6) BS01 FE 1.13.11.12 GO:0005506 ... P08170 11412104
    3628 1fgs:A (2.4) BS01 MG 6.3.2.17 GO:0004326 ... P15925 9618466
    3629 1fgt:A (1.62) BS01 FE 1.13.11.12 GO:0005506 ... P08170 11412104
    3630 1fha:A (2.4) BS01 FE 1.16.3.1 GO:0004322 ... P02794 1992356
    3631 1fhf:A (2.8) BS01 CA 1.11.1.7 GO:0004601 ... O22443 11266599
    3632 1fhf:A (2.8) BS02 CA 1.11.1.7 GO:0004601 ... O22443 11266599
    3633 1fhf:B (2.8) BS01 CA 1.11.1.7 GO:0004601 ... O22443 11266599
    3634 1fhf:B (2.8) BS02 CA 1.11.1.7 GO:0004601 ... O22443 11266599
    3635 1fhf:C (2.8) BS01 CA 1.11.1.7 GO:0004601 ... O22443 11266599
    3636 1fhf:C (2.8) BS02 CA 1.11.1.7 GO:0004601 ... O22443 11266599
    3637 1fhh:A (1.5) BS01 FE ? GO:0005506 ... P00268 11344329
    3638 1fhm:A (1.5) BS01 FE2 ? GO:0005506 ... P00268 11344329
    3639 1fhv:A (1.77) BS01 MG 4.2.1.113 GO:0000287 ... P29208 10978150
    3640 1fi2:A (1.6) BS01 MN 1.2.3.4 GO:0004784 ... P45850 11062559
    3641 1fi5:A (-1.00) BS01 CA ? GO:0005509 ... P09860 10387077
    3642 1fi5:A (-1.00) BS02 CA ? GO:0005509 ... P09860 10387077
    3643 1fi6:A (-1.00) BS01 CA ? GO:0005509 ... O54916 11389591
    3644 1fib:A (2.1) BS01 CA ? GO:0007596 ... P02679 9016719
    3645 1fic:A (2.5) BS01 CA ? GO:0007596 ... P02679 9016719
    3646 1fic:B (2.5) BS01 CA ? GO:0007596 ... P02679 9016719
    3647 1fid:A (2.1) BS01 CA ? GO:0007596 ... P02679 9016719
    3648 1fif:A (1.95) BS01 CA ? N/A P19999 10931846
    3649 1fif:A (1.95) BS02 CA ? N/A P19999 10931846
    3650 1fif:B (1.95) BS01 CA ? N/A P19999 10931846
    3651 1fif:B (1.95) BS02 CA ? N/A P19999 10931846
    3652 1fif:B (1.95) BS03 CA ? N/A P19999 10931846
    3653 1fif:C (1.95) BS01 CA ? N/A P19999 10931846
    3654 1fif:C (1.95) BS02 CA ? N/A P19999 10931846
    3655 1fih:A (1.95) BS01 CA ? N/A P19999 10931846
    3656 1fih:A (1.95) BS02 CA ? N/A P19999 10931846
    3657 1fih:B (1.95) BS01 CA ? N/A P19999 10931846
    3658 1fih:B (1.95) BS02 CA ? N/A P19999 10931846
    3659 1fih:B (1.95) BS03 CA ? N/A P19999 10931846
    3660 1fih:C (1.95) BS01 CA ? N/A P19999 10931846
    3661 1fih:C (1.95) BS02 CA ? N/A P19999 10931846
    3662 1fio:A (2.1) BS01 ZN ? GO:0016020 ... P32867 11017200
    3663 1fio:A (2.1) BS02 ZN ? GO:0016020 ... P32867 11017200
    3664 1fiu:A (1.6) BS04 MG 3.1.21.4 GO:0004519 ... P31032 10966652
    3665 1fiu:B (1.6) BS04 MG 3.1.21.4 GO:0004519 ... P31032 10966652
    3666 1fiu:C (1.6) BS04 MG 3.1.21.4 GO:0004519 ... P31032 10966652
    3667 1fiu:D (1.6) BS04 MG 3.1.21.4 GO:0004519 ... P31032 10966652
    3668 1fj3:A (2.0) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 11287678
    3669 1fj3:A (2.0) BS02 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3670 1fj3:A (2.0) BS03 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3671 1fj3:A (2.0) BS04 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3672 1fj3:A (2.0) BS05 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3673 1fj6:A (2.5) BS02 ZN 3.1.3.11 GO:0005737 ... P00636 10998248
    3674 1fj6:A (2.5) BS03 ZN 3.1.3.11 GO:0005737 ... P00636 10998248
    3675 1fj6:A (2.5) BS04 ZN 3.1.3.11 GO:0005737 ... P00636 10998248
    3676 1fj9:A (2.5) BS02 ZN 3.1.3.11 GO:0005737 ... P00636 10998248
    3677 1fj9:A (2.5) BS03 ZN 3.1.3.11 GO:0005737 ... P00636 10998248
    3678 1fj9:B (2.5) BS02 ZN 3.1.3.11 GO:0005737 ... P00636 10998248
    3679 1fj9:B (2.5) BS03 ZN 3.1.3.11 GO:0005737 ... P00636 10998248
    3680 1fjg:D (3.0) BS02 MG ? GO:0003723 ... P80373 11014183
    3681 1fjg:N (3.0) BS02 ZN ? GO:0003735 ... P0DOY6 11014183
    3682 1fjm:A (2.1) BS02 MN 3.1.3.16 GO:0000164 ... P62139 7651533
    3683 1fjm:A (2.1) BS03 MN 3.1.3.16 GO:0000164 ... P62139 7651533
    3684 1fjm:B (2.1) BS02 MN 3.1.3.16 GO:0000164 ... P62139 7651533
    3685 1fjm:B (2.1) BS03 MN 3.1.3.16 GO:0000164 ... P62139 7651533
    3686 1fjo:A (2.0) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 11287678
    3687 1fjo:A (2.0) BS02 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3688 1fjo:A (2.0) BS03 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3689 1fjo:A (2.0) BS04 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3690 1fjo:A (2.0) BS05 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3691 1fjq:A (1.7) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 11287678
    3692 1fjq:A (1.7) BS02 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3693 1fjq:A (1.7) BS03 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3694 1fjq:A (1.7) BS04 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3695 1fjq:A (1.7) BS05 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3696 1fjs:A (1.92) BS01 CA 3.4.21.6 GO:0004252 ... P00742 11027132
    3697 1fjt:A (2.2) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 11287678
    3698 1fjt:A (2.2) BS02 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3699 1fjt:A (2.2) BS03 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3700 1fjt:A (2.2) BS04 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3701 1fjt:A (2.2) BS05 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3702 1fju:A (2.0) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 11287678
    3703 1fju:A (2.0) BS02 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3704 1fju:A (2.0) BS03 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3705 1fju:A (2.0) BS04 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3706 1fju:A (2.0) BS05 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3707 1fjv:A (2.0) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 11287678
    3708 1fjv:A (2.0) BS02 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3709 1fjv:A (2.0) BS03 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3710 1fjv:A (2.0) BS04 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3711 1fjv:A (2.0) BS05 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3712 1fjw:A (1.9) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 11287678
    3713 1fjw:A (1.9) BS02 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3714 1fjw:A (1.9) BS03 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3715 1fjw:A (1.9) BS04 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3716 1fjw:A (1.9) BS05 CA 3.4.24.27 GO:0004222 ... P00800 11287678
    3717 1fkq:A (1.8) BS01 CA 2.4.1.22 GO:0003796 ... P00712 11536356
    3718 1fkv:A (2.0) BS01 CA 2.4.1.22 GO:0003796 ... P00712 11536356
    3719 1fkw:A (2.4) BS01 ZN 3.5.4.4 GO:0000255 ... P03958 8672487
    3720 1fkx:A (2.4) BS01 ZN 3.5.4.4 GO:0000255 ... P03958 8672487
    3721 1flg:A (2.6) BS01 CA 1.1.2.8 GO:0005509 ... Q9Z4J7 10736230
    3722 1flg:A (2.6) BS02 CA 1.1.2.8 GO:0005509 ... Q9Z4J7 10736230
    3723 1flg:B (2.6) BS01 CA 1.1.2.8 GO:0005509 ... Q9Z4J7 10736230
    3724 1flg:B (2.6) BS02 CA 1.1.2.8 GO:0005509 ... Q9Z4J7 10736230
    3725 1flj:A (1.8) BS01 ZN 4.2.1.1 GO:0004089 ... P14141 11024467
    3726 1fls:A (-1.00) BS01 ZN 3.4.24.- GO:0004222 ... P45452 10986126
    3727 1fls:A (-1.00) BS02 ZN 3.4.24.- GO:0004222 ... P45452 10986126
    3728 1fls:A (-1.00) BS03 CA 3.4.24.- GO:0004222 ... P45452 10986126
    3729 1fm1:A (-1.00) BS01 ZN 3.4.24.- GO:0004222 ... P45452 10986126
    3730 1fm1:A (-1.00) BS02 ZN 3.4.24.- GO:0004222 ... P45452 10986126
    3731 1fm1:A (-1.00) BS03 CA 3.4.24.- GO:0004222 ... P45452 10986126
    3732 1fmg:A (1.9) BS01 CA 3.4.21.4 GO:0004252 ... P00761 11679713
    3733 1fmj:A (2.0) BS01 CA ? GO:0005737 ... Q26490 11323722
    3734 1fmj:B (2.0) BS01 CA ? GO:0005737 ... Q26490 11323722
    3735 1fml:A (2.75) BS01 CA ? GO:0005737 ... Q26490 11323722
    3736 1fml:B (2.75) BS01 CA ? GO:0005737 ... Q26490 11323722
    3737 1fmw:A (2.15) BS01 MG ? GO:0003774 ... P08799 10954715
    3738 1fn6:A (1.8) BS01 CA 3.4.21.4 GO:0004252 ... P00761 11679713
    3739 1fn9:A (1.8) BS01 ZN ? GO:0003723 ... P03527 11230122
    3740 1fn9:B (1.8) BS01 ZN ? GO:0003723 ... P03527 11230122
    3741 1fni:A (1.6) BS01 CA 3.4.21.4 GO:0004252 ... P00761 11679713
    3742 1fno:A (2.4) BS01 ZN 3.4.11.4 GO:0004177 ... P26311 11856302
    3743 1fno:A (2.4) BS02 ZN 3.4.11.4 GO:0004177 ... P26311 11856302
    3744 1fnp:L (2.6) BS05 FE ? GO:0009772 ... P0C0Y8 11284681
    3745 1fnp:M (2.6) BS03 FE ? GO:0009772 ... P0C0Y9 11284681
    3746 1fnq:L (2.6) BS05 FE ? GO:0009772 ... P0C0Y8 11284681
    3747 1fnq:M (2.6) BS03 FE ? GO:0009772 ... P0C0Y9 11284681
    3748 1fnt:H (3.2) BS01 MG 3.4.25.1 GO:0000502 ... P38624 11081519
    3749 1fnt:I (3.2) BS01 MG 3.4.25.1 GO:0004298 ... P25043 11081519
    3750 1fnt:J (3.2) BS01 MG 3.4.99.46 GO:0000502 ... P25451 11081519
    3751 1fnt:L (3.2) BS01 MG 3.4.25.1 GO:0004298 ... P30656 11081519
    3752 1fnt:V (3.2) BS01 MG 3.4.25.1 GO:0000502 ... P38624 11081519
    3753 1fnt:W (3.2) BS01 MG 3.4.25.1 GO:0004298 ... P25043 11081519
    3754 1fnt:X (3.2) BS01 MG 3.4.99.46 GO:0000502 ... P25451 11081519
    3755 1fnt:Z (3.2) BS01 MG 3.4.25.1 GO:0004298 ... P30656 11081519
    3756 1fnt:a (3.2) BS01 MG 3.4.99.46 GO:0000502 ... P23724 11081519
    3757 1fny:A (1.81) BS01 CA ? GO:0030246 ... Q41159 11484224
    3758 1fnz:A (2.05) BS01 CA ? GO:0030246 ... Q41159 11484224
    3759 1fo4:A (2.1) BS01 CA 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 11005854
    3760 1fo4:B (2.1) BS01 CA 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 11005854
    3761 1fof:A (2.0) BS01 CO 3.5.2.6 GO:0008658 ... P14489 11017203
    3762 1fof:B (2.0) BS01 CO 3.5.2.6 GO:0008658 ... P14489 11017203
    3763 1foi:A (1.93) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11331003
    3764 1foi:B (1.93) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11331003
    3765 1foj:A (2.1) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11695891
    3766 1foj:B (2.1) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11695891
    3767 1fol:B (2.2) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11331003
    3768 1foo:A (2.0) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11331003
    3769 1foo:B (2.0) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11331003
    3770 1fop:A (2.3) BS04 ZN 1.14.13.39 GO:0004517 ... P29473 11331003
    3771 1fop:B (2.3) BS02 ZN 1.14.13.39 GO:0004517 ... P29473 11331003
    3772 1fp0:A (-1.00) BS01 ZN 2.3.2.27 N/A Q13263 11226167
    3773 1fp0:A (-1.00) BS02 ZN 2.3.2.27 N/A Q13263 11226167
    3774 1fp4:B (2.5) BS02 CA 1.18.6.1 GO:0005524 ... P07329 11327812
    3775 1fp4:B (2.5) BS03 CA 1.18.6.1 GO:0005524 ... P07329 11327812
    3776 1fp4:D (2.5) BS01 CA 1.18.6.1 GO:0005524 ... P07329 11327812
    3777 1fp4:D (2.5) BS03 CA 1.18.6.1 GO:0005524 ... P07329 11327812
    3778 1fp7:A (3.2) BS01 K 6.3.4.3 GO:0004329 ... P21164 11087401
    3779 1fpd:A (2.1) BS01 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    3780 1fpd:A (2.1) BS02 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    3781 1fpd:B (2.1) BS01 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    3782 1fpd:B (2.1) BS02 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    3783 1fpe:A (2.2) BS01 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    3784 1fpe:A (2.2) BS02 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    3785 1fpe:B (2.2) BS01 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    3786 1fpe:B (2.2) BS02 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    3787 1fpf:A (2.1) BS01 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    3788 1fpf:A (2.1) BS02 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    3789 1fpf:B (2.1) BS01 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    3790 1fpf:B (2.1) BS02 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    3791 1fpg:A (2.3) BS01 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    3792 1fpg:A (2.3) BS02 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    3793 1fpg:B (2.3) BS01 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    3794 1fpg:B (2.3) BS02 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    3795 1fpi:A (2.3) BS01 K 3.1.3.11 GO:0005737 ... P00636 7568043
    3796 1fpi:A (2.3) BS02 K 3.1.3.11 GO:0005737 ... P00636 7568043
    3797 1fpi:A (2.3) BS03 K 3.1.3.11 GO:0005737 ... P00636 7568043
    3798 1fpi:B (2.3) BS01 K 3.1.3.11 GO:0005737 ... P00636 7568043
    3799 1fpi:B (2.3) BS02 K 3.1.3.11 GO:0005737 ... P00636 7568043
    3800 1fpi:B (2.3) BS03 K 3.1.3.11 GO:0005737 ... P00636 7568043
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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