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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3401 1f4s:P (-1.00) BS04 ZN ? GO:0000981 ... P21228 11566132
    3402 1f4t:A (1.93) BS01 ZN 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 10859321
    3403 1f4t:B (1.93) BS01 ZN 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 10859321
    3404 1f4v:A (2.22) BS03 MG ? GO:0000156 ... P0AE67 11135671
    3405 1f4v:B (2.22) BS02 MG ? GO:0000156 ... P0AE67 11135671
    3406 1f4v:C (2.22) BS03 MG ? GO:0000156 ... P0AE67 11135671
    3407 1f51:E (3.0) BS01 MG 2.7.-.- GO:0000160 ... P06628 10997904
    3408 1f52:A (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3409 1f52:A (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3410 1f52:B (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3411 1f52:B (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3412 1f52:C (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3413 1f52:C (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3414 1f52:D (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3415 1f52:D (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3416 1f52:E (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3417 1f52:E (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3418 1f52:F (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3419 1f52:F (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3420 1f52:G (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3421 1f52:G (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3422 1f52:H (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3423 1f52:H (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3424 1f52:I (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3425 1f52:I (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3426 1f52:J (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3427 1f52:J (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3428 1f52:K (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3429 1f52:K (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3430 1f52:L (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3431 1f52:L (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3432 1f55:A (-1.00) BS01 CA ? GO:0005509 ... P06787 11076504
    3433 1f55:A (-1.00) BS02 CA ? GO:0005509 ... P06787 11076504
    3434 1f56:A (2.05) BS01 CU1 ? GO:0005886 ... O82080 11085657
    3435 1f56:B (2.05) BS01 CU1 ? GO:0005886 ... O82080 11085657
    3436 1f56:C (2.05) BS01 CU1 ? GO:0005886 ... O82080 11085657
    3437 1f57:A (1.75) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 10955996
    3438 1f5a:A (2.5) BS01 MN 2.7.7.19 GO:0003723 ... P25500 10944102
    3439 1f5a:A (2.5) BS02 MN 2.7.7.19 GO:0003723 ... P25500 10944102
    3440 1f5e:P (-1.00) BS03 ZN ? GO:0000981 ... P21228 11566132
    3441 1f5e:P (-1.00) BS04 ZN ? GO:0000981 ... P21228 11566132
    3442 1f5f:A (1.7) BS01 CA ? N/A P04278 10859323
    3443 1f5f:A (1.7) BS02 ZN ? N/A P04278 10859323
    3444 1f5f:A (1.7) BS03 ZN ? N/A P04278 10859323
    3445 1f5n:A (1.7) BS01 MG 3.6.1.-
    3.6.5.-
    GO:0000139 ... P32455 10970849
    3446 1f5r:A (1.65) BS01 CA 3.4.21.4 GO:0004252 ... P00763 11420435
    3447 1f5s:A (1.8) BS02 MG 3.1.3.3 GO:0000287 ... Q58989 11342136
    3448 1f5s:B (1.8) BS02 MG 3.1.3.3 GO:0000287 ... Q58989 11342136
    3449 1f5t:A (3.0) BS03 NI ? GO:0003677 ... P0DJL7 10956029
    3450 1f5t:A (3.0) BS04 NI ? GO:0003677 ... P0DJL7 10956029
    3451 1f5t:B (3.0) BS03 NI ? GO:0003677 ... P0DJL7 10956029
    3452 1f5t:B (3.0) BS04 NI ? GO:0003677 ... P0DJL7 10956029
    3453 1f5t:C (3.0) BS03 NI ? GO:0003677 ... P0DJL7 10956029
    3454 1f5t:C (3.0) BS04 NI ? GO:0003677 ... P0DJL7 10956029
    3455 1f5t:D (3.0) BS03 NI ? GO:0003677 ... P0DJL7 10956029
    3456 1f5t:D (3.0) BS04 NI ? GO:0003677 ... P0DJL7 10956029
    3457 1f5y:A (-1.00) BS01 CA ? N/A P01130 10933493
    3458 1f5y:A (-1.00) BS02 CA ? N/A P01130 10933493
    3459 1f61:A (2.0) BS01 MG 4.1.3.1 GO:0003824 ... P9WKK7 10932251
    3460 1f61:B (2.0) BS01 MG 4.1.3.1 GO:0003824 ... P9WKK7 10932251
    3461 1f62:A (-1.00) BS01 ZN 2.7.10.2 GO:0006338 ... Q9UIG0 11124022
    3462 1f62:A (-1.00) BS02 ZN 2.7.10.2 GO:0006338 ... Q9UIG0 11124022
    3463 1f66:C (2.6) BS03 MN ? GO:0000786 ... P0C0S5 11101893
    3464 1f66:G (2.6) BS03 MN ? GO:0000786 ... P0C0S5 11101893
    3465 1f6b:A (1.7) BS01 MG 3.6.5.2 GO:0003400 ... Q9QVY3 11739406
    3466 1f6n:L (2.8) BS06 FE ? GO:0009772 ... P0C0Y8 11284681
    3467 1f6n:M (2.8) BS04 FE ? GO:0009772 ... P0C0Y9 11284681
    3468 1f6s:A (2.2) BS01 CA ? GO:0003796 ... P00711 10896943
    3469 1f6s:B (2.2) BS01 CA ? GO:0003796 ... P00711 10896943
    3470 1f6s:C (2.2) BS01 CA ? GO:0003796 ... P00711 10896943
    3471 1f6s:D (2.2) BS01 CA ? GO:0003796 ... P00711 10896943
    3472 1f6s:E (2.2) BS01 CA ? GO:0003796 ... P00711 10896943
    3473 1f6s:F (2.2) BS01 CA ? GO:0003796 ... P00711 10896943
    3474 1f6u:A (-1.00) BS02 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P35963 10926523
    3475 1f6u:A (-1.00) BS03 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P35963 10926523
    3476 1f7l:A (1.5) BS01 CA 2.7.8.7 GO:0000287 ... P96618 10997907
    3477 1f7z:A (1.55) BS01 CA 3.4.21.4 GO:0004252 ... P00763 11420435
    3478 1f81:A (-1.00) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 11023789
    3479 1f81:A (-1.00) BS02 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 11023789
    3480 1f81:A (-1.00) BS03 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 11023789
    3481 1f82:A (2.2) BS01 ZN 3.4.24.69 GO:0004222 ... P10844 10932255
    3482 1f88:A (2.8) BS01 ZN ? GO:0000139 ... P02699 10926528
    3483 1f8b:A (1.8) BS01 CA 3.2.1.18 GO:0004308 ... P03472 11274459
    3484 1f8c:A (1.7) BS01 CA 3.2.1.18 GO:0004308 ... P03472 11274459
    3485 1f8d:A (1.4) BS01 CA 3.2.1.18 GO:0004308 ... P03472 11274459
    3486 1f8e:A (1.4) BS01 CA 3.2.1.18 GO:0004308 ... P03472 11274459
    3487 1f8f:A (2.2) BS01 ZN 1.1.1.1 GO:0000166 ... Q59096 N/A
    3488 1f8f:A (2.2) BS02 ZN 1.1.1.1 GO:0000166 ... Q59096 N/A
    3489 1f8h:A (-1.00) BS02 CA ? GO:0005509 ... P42566 11062555
    3490 1f8n:A (1.4) BS01 FE2 1.13.11.12 GO:0005506 ... P08170 11412104
    3491 1f8v:C (3.0) BS02 CA 3.4.23.44 GO:0004190 ... Q9J7Z0 11135676
    3492 1f8z:A (-1.00) BS01 CA ? N/A P01130 10981718
    3493 1f9b:A (2.7) BS01 FE 3.4.21.- GO:0005576 ... O77811 11599026
    3494 1f9b:A (2.7) BS02 FE 3.4.21.- GO:0005576 ... O77811 11599026
    3495 1f9c:A (2.5) BS01 MN 5.5.1.1 GO:0003824 ... Q51958 11080642
    3496 1f9c:B (2.5) BS01 MN 5.5.1.1 GO:0003824 ... Q51958 11080642
    3497 1f9d:A (2.3) BS10 CA 3.2.1.4 GO:0004553 ... P37698 10985769
    3498 1f9h:A (1.5) BS01 MG 2.7.6.3 GO:0000287 ... P26281 12578370
    3499 1f9h:A (1.5) BS02 MG 2.7.6.3 GO:0000287 ... P26281 12578370
    3500 1f9k:A (3.0) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    3501 1f9k:A (3.0) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    3502 1f9k:B (3.0) BS01 MN ? GO:0030246 ... Q9SM56 11183779
    3503 1f9k:B (3.0) BS02 CA ? GO:0030246 ... Q9SM56 11183779
    3504 1f9o:A (2.5) BS06 CA 3.2.1.4 GO:0004553 ... P37698 10985769
    3505 1f9x:A (-1.00) BS01 ZN 2.3.2.27 N/A P98170 10934209
    3506 1fa0:A (2.6) BS01 MN 2.7.7.19 GO:0000287 ... P29468 10958780
    3507 1fa0:A (2.6) BS02 MN 2.7.7.19 GO:0000287 ... P29468 10958780
    3508 1fa0:B (2.6) BS01 MN 2.7.7.19 GO:0000287 ... P29468 10958780
    3509 1fa0:B (2.6) BS02 MN 2.7.7.19 GO:0000287 ... P29468 10958780
    3510 1fa4:A (-1.00) BS01 CU ? GO:0005507 ... Q3M9H8 N/A
    3511 1fa5:A (1.8) BS01 ZN 4.4.1.5 GO:0004462 ... P0AC81 10913283
    3512 1fa5:A (1.8) BS02 ZN 4.4.1.5 GO:0004462 ... P0AC81 10913283
    3513 1fa5:B (1.8) BS01 ZN 4.4.1.5 GO:0004462 ... P0AC81 10913283
    3514 1fa5:B (1.8) BS02 ZN 4.4.1.5 GO:0004462 ... P0AC81 10913283
    3515 1fa6:A (1.9) BS01 CO 4.4.1.5 GO:0004462 ... P0AC81 10913283
    3516 1fa6:A (1.9) BS02 CO 4.4.1.5 GO:0004462 ... P0AC81 10913283
    3517 1fa6:B (1.9) BS01 CO 4.4.1.5 GO:0004462 ... P0AC81 10913283
    3518 1fa6:B (1.9) BS02 CO 4.4.1.5 GO:0004462 ... P0AC81 10913283
    3519 1fae:A (2.0) BS03 CA 3.2.1.4 GO:0004553 ... P37698 10985769
    3520 1fak:H (2.1) BS01 CA 3.4.21.21 GO:0004252 ... P08709 9925787
    3521 1fak:L (2.1) BS03 CA 3.4.21.21 GO:0005509 ... P08709 9925787
    3522 1faq:A (-1.00) BS01 ZN 2.7.11.1 N/A P04049 8710867
    3523 1faq:A (-1.00) BS02 ZN 2.7.11.1 N/A P04049 8710867
    3524 1far:A (-1.00) BS01 ZN 2.7.11.1 N/A P04049 8710867
    3525 1fat:A (2.8) BS01 MN ? GO:0005537 ... P05087 8702788
    3526 1fat:A (2.8) BS02 CA ? GO:0005537 ... P05087 8702788
    3527 1fat:B (2.8) BS01 MN ? GO:0005537 ... P05087 8702788
    3528 1fat:B (2.8) BS02 CA ? GO:0005537 ... P05087 8702788
    3529 1fat:C (2.8) BS01 MN ? GO:0005537 ... P05087 8702788
    3530 1fat:C (2.8) BS02 CA ? GO:0005537 ... P05087 8702788
    3531 1fat:D (2.8) BS01 MN ? GO:0005537 ... P05087 8702788
    3532 1fat:D (2.8) BS02 CA ? GO:0005537 ... P05087 8702788
    3533 1fax:A (3.0) BS01 CA 3.4.21.6 GO:0004252 ... P00742 8939944
    3534 1fay:A (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    3535 1fay:A (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    3536 1fay:B (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    3537 1fay:B (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    3538 1fay:C (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    3539 1fay:C (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    3540 1fay:D (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    3541 1fay:D (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    3542 1fay:E (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    3543 1fay:E (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    3544 1fay:F (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    3545 1fay:F (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    3546 1fay:G (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    3547 1fay:G (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    3548 1fay:H (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    3549 1fay:H (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    3550 1fb1:A (3.1) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 11087827
    3551 1fb1:B (3.1) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 11087827
    3552 1fb1:C (3.1) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 11087827
    3553 1fb1:D (3.1) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 11087827
    3554 1fb1:E (3.1) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 11087827
    3555 1fbc:A (2.6) BS01 MG 3.1.3.11 GO:0005737 ... P00636 8382525
    3556 1fbc:B (2.6) BS01 MG 3.1.3.11 GO:0005737 ... P00636 8382525
    3557 1fbd:A (2.9) BS01 MN 3.1.3.11 GO:0005737 ... P00636 8382525
    3558 1fbd:A (2.9) BS02 MN 3.1.3.11 GO:0005737 ... P00636 8382525
    3559 1fbd:B (2.9) BS01 MN 3.1.3.11 GO:0005737 ... P00636 8382525
    3560 1fbd:B (2.9) BS02 MN 3.1.3.11 GO:0005737 ... P00636 8382525
    3561 1fbe:A (3.0) BS01 ZN 3.1.3.11 GO:0005737 ... P00636 8382525
    3562 1fbe:A (3.0) BS02 ZN 3.1.3.11 GO:0005737 ... P00636 8382525
    3563 1fbe:B (3.0) BS01 ZN 3.1.3.11 GO:0005737 ... P00636 8382525
    3564 1fbe:B (3.0) BS02 ZN 3.1.3.11 GO:0005737 ... P00636 8382525
    3565 1fbf:A (2.7) BS01 MG 3.1.3.11 GO:0005737 ... P00636 8382525
    3566 1fbf:B (2.7) BS01 MG 3.1.3.11 GO:0005737 ... P00636 8382525
    3567 1fbg:A (3.0) BS01 MN 3.1.3.11 GO:0005737 ... P00636 8382525
    3568 1fbg:B (3.0) BS01 MN 3.1.3.11 GO:0005737 ... P00636 8382525
    3569 1fbl:A (2.5) BS01 CA 3.4.24.7 GO:0004222 ... P21692 8590015
    3570 1fbl:A (2.5) BS02 CA 3.4.24.7 GO:0004222 ... P21692 8590015
    3571 1fbl:A (2.5) BS03 CA 3.4.24.7 GO:0004222 ... P21692 8590015
    3572 1fbl:A (2.5) BS04 CA 3.4.24.7 GO:0004222 ... P21692 8590015
    3573 1fbl:A (2.5) BS05 ZN 3.4.24.7 GO:0004222 ... P21692 8590015
    3574 1fbl:A (2.5) BS06 ZN 3.4.24.7 GO:0004222 ... P21692 8590015
    3575 1fbo:A (2.3) BS03 CA 3.2.1.4 GO:0004553 ... P37698 10985769
    3576 1fbp:A (2.5) BS02 MG 3.1.3.11 GO:0005737 ... P00636 2164670
    3577 1fbp:B (2.5) BS02 MG 3.1.3.11 GO:0005737 ... P00636 2164670
    3578 1fbv:A (2.9) BS02 ZN 2.3.2.27 GO:0001784 ... P22681 10966114
    3579 1fbv:A (2.9) BS03 ZN 2.3.2.27 GO:0001784 ... P22681 10966114
    3580 1fbw:A (2.0) BS09 CA 3.2.1.4 GO:0004553 ... P37698 10985769
    3581 1fbx:A (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    3582 1fbx:B (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    3583 1fbx:C (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    3584 1fbx:D (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    3585 1fbx:E (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    3586 1fbx:F (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    3587 1fbx:G (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    3588 1fbx:H (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    3589 1fbx:I (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    3590 1fbx:J (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    3591 1fbx:K (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    3592 1fbx:L (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    3593 1fbx:M (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    3594 1fbx:N (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    3595 1fbx:O (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    3596 1fce:A (2.0) BS07 CA 3.2.1.4 GO:0004553 ... P37698 9755156
    3597 1fck:A (2.2) BS03 CE 3.4.21.- GO:0001503 ... P02788 11128996
    3598 1fck:A (2.2) BS04 CE 3.4.21.- GO:0001503 ... P02788 11128996
    3599 1fd8:A (-1.00) BS01 CU1 ? GO:0005737 ... P38636 11327811
    3600 1fdk:A (1.91) BS01 CA 3.1.1.4 GO:0002227 ... P00593 9369492

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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