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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3201 1ex0:B (2.0) BS01 CA 2.3.2.13 GO:0003810 ... P00488 N/A
    3202 1ex9:A (2.54) BS01 CA 3.1.1.3 GO:0004806 ... P26876 10893416
    3203 1exk:A (-1.00) BS01 ZN ? GO:0031072 ... P08622 10891270
    3204 1exk:A (-1.00) BS02 ZN ? GO:0031072 ... P08622 10891270
    3205 1exm:A (1.7) BS01 MG ? GO:0003746 ... P60338 N/A
    3206 1exr:A (1.0) BS01 CA ? GO:0005509 ... P07463 10966818
    3207 1exr:A (1.0) BS02 CA ? GO:0005509 ... P07463 10966818
    3208 1exr:A (1.0) BS03 CA ? GO:0005509 ... P07463 10966818
    3209 1exr:A (1.0) BS04 CA ? GO:0005509 ... P07463 10966818
    3210 1exz:A (2.3) BS01 CA ? GO:0005173 ... P21583 10884405
    3211 1ey2:A (2.3) BS01 FE2 1.13.11.5 GO:0004411 ... Q93099 10876237
    3212 1eye:A (1.7) BS01 MG 2.5.1.15 GO:0004156 ... P9WND1 11007651
    3213 1eyf:A (-1.00) BS01 ZN 2.1.1.63
    2.1.1.n11
    GO:0003677 ... P06134 11284682
    3214 1eyi:A (2.32) BS02 MG 3.1.3.11 GO:0005737 ... P00636 10913263
    3215 1eyi:A (2.32) BS03 MG 3.1.3.11 GO:0005737 ... P00636 10913263
    3216 1eyj:A (2.28) BS02 MG 3.1.3.11 GO:0005737 ... P00636 10913263
    3217 1eyj:B (2.28) BS02 MG 3.1.3.11 GO:0005737 ... P00636 10913263
    3218 1eyk:A (2.23) BS02 ZN 3.1.3.11 GO:0005737 ... P00636 10913263
    3219 1eyk:B (2.23) BS02 ZN 3.1.3.11 GO:0005737 ... P00636 10913263
    3220 1eys:L (2.2) BS04 FE N/A GO:0009772 ... N/A 11095707
    3221 1eys:M (2.2) BS03 FE N/A GO:0009772 ... N/A 11095707
    3222 1eyw:A (1.9) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 10871616
    3223 1eyw:A (1.9) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 10871616
    3224 1eyz:A (1.75) BS01 MG 6.3.1.21 GO:0000287 ... P33221 10913290
    3225 1eyz:B (1.75) BS01 MG 6.3.1.21 GO:0000287 ... P33221 10913290
    3226 1ez1:A (1.75) BS01 MG 6.3.1.21 GO:0000287 ... P33221 10913290
    3227 1ez1:B (1.75) BS01 MG 6.3.1.21 GO:0000287 ... P33221 10913290
    3228 1ez2:A (1.9) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 10871616
    3229 1ez2:A (1.9) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 10871616
    3230 1ez2:B (1.9) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 10871616
    3231 1ez2:B (1.9) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 10871616
    3232 1ezl:A (2.0) BS01 CU ? GO:0005507 ... P00282 10880975
    3233 1ezl:B (2.0) BS01 CU ? GO:0005507 ... P00282 10880975
    3234 1ezl:C (2.0) BS01 CU ? GO:0005507 ... P00282 10880975
    3235 1ezm:A (1.5) BS01 ZN 3.4.24.26 GO:0004222 ... P14756 1899664
    3236 1ezm:A (1.5) BS02 CA 3.4.24.26 GO:0004222 ... P14756 1899664
    3237 1ezq:A (2.2) BS01 CA 3.4.21.6 GO:0004252 ... P00742 10966741
    3238 1ezr:A (2.5) BS01 CA 3.2.2.2
    3.2.2.3
    GO:0005509 ... P83851 10409664
    3239 1ezr:B (2.5) BS01 CA 3.2.2.2
    3.2.2.3
    GO:0005509 ... P83851 10409664
    3240 1ezr:C (2.5) BS01 CA 3.2.2.2
    3.2.2.3
    GO:0005509 ... P83851 10409664
    3241 1ezr:D (2.5) BS01 CA 3.2.2.2
    3.2.2.3
    GO:0005509 ... P83851 10409664
    3242 1ezs:C (2.3) BS01 CA 3.4.21.4 GO:0004252 ... P00763 10843853
    3243 1ezs:D (2.3) BS01 CA 3.4.21.4 GO:0004252 ... P00763 10843853
    3244 1ezu:C (2.4) BS01 CA 3.4.21.4 GO:0004252 ... P00763 10843853
    3245 1ezu:D (2.4) BS01 CA 3.4.21.4 GO:0004252 ... P00763 10843853
    3246 1ezw:A (1.65) BS01 MG 1.5.98.2 GO:0005737 ... Q8TXY4 10891279
    3247 1ezz:B (2.7) BS01 ZN ? GO:0005515 ... P0A7F3 10891088
    3248 1ezz:D (2.7) BS01 ZN ? GO:0005515 ... P0A7F3 10891088
    3249 1f0j:A (1.77) BS01 ZN 3.1.4.53 GO:0004114 ... Q07343 10846163
    3250 1f0j:B (1.77) BS01 ZN 3.1.4.53 GO:0004114 ... Q07343 10846163
    3251 1f0o:A (2.5) BS03 CA 3.1.21.4 GO:0003677 ... P23657 10903853
    3252 1f0o:A (2.5) BS04 CA 3.1.21.4 GO:0003677 ... P23657 10903853
    3253 1f0o:B (2.5) BS03 CA 3.1.21.4 GO:0003677 ... P23657 10903853
    3254 1f0o:B (2.5) BS04 CA 3.1.21.4 GO:0003677 ... P23657 10903853
    3255 1f0r:A (2.1) BS01 CA 3.4.21.6 GO:0004252 ... P00742 10966741
    3256 1f0s:A (2.1) BS01 CA 3.4.21.6 GO:0004252 ... P00742 10966741
    3257 1f0t:A (1.8) BS01 CA 3.4.21.4 GO:0004252 ... P00760 10966741
    3258 1f0u:A (1.9) BS01 CA 3.4.21.4 GO:0004252 ... P00760 10966741
    3259 1f18:A (1.7) BS01 CU 1.15.1.1 GO:0004784 ... P00445 10026301
    3260 1f18:A (1.7) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 10026301
    3261 1f1a:A (1.8) BS01 CU 1.15.1.1 GO:0004784 ... P00445 10026301
    3262 1f1a:A (1.8) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 10026301
    3263 1f1b:B (2.3) BS01 ZN ? GO:0005515 ... P0A7F3 10891088
    3264 1f1b:D (2.3) BS01 ZN ? GO:0005515 ... P0A7F3 10891088
    3265 1f1d:A (2.1) BS01 CU 1.15.1.1 GO:0004784 ... P00445 10026301
    3266 1f1d:A (2.1) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 10026301
    3267 1f1g:A (1.35) BS01 CU 1.15.1.1 GO:0004784 ... P00445 10026301
    3268 1f1g:A (1.35) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 10026301
    3269 1f1g:B (1.35) BS01 CU 1.15.1.1 GO:0004784 ... P00445 10026301
    3270 1f1g:B (1.35) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 10026301
    3271 1f1g:C (1.35) BS01 CU 1.15.1.1 GO:0004784 ... P00445 10026301
    3272 1f1g:C (1.35) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 10026301
    3273 1f1g:D (1.35) BS01 CU 1.15.1.1 GO:0004784 ... P00445 10026301
    3274 1f1g:D (1.35) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 10026301
    3275 1f1g:E (1.35) BS01 CU 1.15.1.1 GO:0004784 ... P00445 10026301
    3276 1f1g:E (1.35) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 10026301
    3277 1f1g:F (1.35) BS01 CU 1.15.1.1 GO:0004784 ... P00445 10026301
    3278 1f1g:F (1.35) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 10026301
    3279 1f1h:A (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3280 1f1h:A (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3281 1f1h:B (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3282 1f1h:B (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3283 1f1h:C (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3284 1f1h:C (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3285 1f1h:D (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3286 1f1h:D (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3287 1f1h:E (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3288 1f1h:E (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3289 1f1h:F (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3290 1f1h:F (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3291 1f1h:G (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3292 1f1h:G (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3293 1f1h:H (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3294 1f1h:H (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3295 1f1h:I (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3296 1f1h:I (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3297 1f1h:J (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3298 1f1h:J (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3299 1f1h:K (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3300 1f1h:K (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3301 1f1h:L (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3302 1f1h:L (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3303 1f1r:A (1.8) BS01 MN 1.13.11.15 GO:0003824 ... Q44048 15028678
    3304 1f1r:B (1.8) BS01 MN 1.13.11.15 GO:0003824 ... Q44048 15028678
    3305 1f1u:A (1.5) BS01 MN 1.13.11.15 GO:0003824 ... Q44048 15028678
    3306 1f1u:B (1.5) BS01 MN 1.13.11.15 GO:0003824 ... Q44048 15028678
    3307 1f1v:A (1.9) BS01 MN 1.13.11.15 GO:0003824 ... Q44048 15028678
    3308 1f1v:B (1.9) BS01 MN 1.13.11.15 GO:0003824 ... Q44048 15028678
    3309 1f1z:A (2.4) BS01 MG 3.1.21.- GO:0003676 ... P13988 10911996
    3310 1f1z:B (2.4) BS01 MG 3.1.21.- GO:0003676 ... P13988 10911996
    3311 1f2i:G (2.35) BS03 ZN ? N/A P08046 11427887
    3312 1f2i:G (2.35) BS04 ZN ? N/A P08046 11427887
    3313 1f2i:H (2.35) BS02 ZN ? N/A P08046 11427887
    3314 1f2i:H (2.35) BS03 ZN ? N/A P08046 11427887
    3315 1f2i:I (2.35) BS02 ZN ? N/A P08046 11427887
    3316 1f2i:I (2.35) BS03 ZN ? N/A P08046 11427887
    3317 1f2i:J (2.35) BS03 ZN ? N/A P08046 11427887
    3318 1f2i:J (2.35) BS04 ZN ? N/A P08046 11427887
    3319 1f2i:K (2.35) BS02 ZN ? N/A P08046 11427887
    3320 1f2i:K (2.35) BS03 ZN ? N/A P08046 11427887
    3321 1f2i:L (2.35) BS02 ZN ? N/A P08046 11427887
    3322 1f2i:L (2.35) BS03 ZN ? N/A P08046 11427887
    3323 1f2n:A (2.8) BS01 CA ? GO:0005198 ... Q86527 11080631
    3324 1f2n:A (2.8) BS02 CA ? GO:0005198 ... Q86527 11080631
    3325 1f2n:B (2.8) BS01 CA ? GO:0005198 ... Q86527 11080631
    3326 1f2n:B (2.8) BS02 CA ? GO:0005198 ... Q86527 11080631
    3327 1f2n:C (2.8) BS01 CA ? GO:0005198 ... Q86527 11080631
    3328 1f2n:C (2.8) BS02 CA ? GO:0005198 ... Q86527 11080631
    3329 1f2o:A (1.7) BS01 ZN 3.4.11.24 GO:0004177 ... P80561 11484227
    3330 1f2o:A (1.7) BS02 ZN 3.4.11.24 GO:0004177 ... P80561 11484227
    3331 1f2o:A (1.7) BS03 CA 3.4.11.24 GO:0004177 ... P80561 11484227
    3332 1f2p:A (1.8) BS01 ZN 3.4.11.24 GO:0004177 ... P80561 11484227
    3333 1f2p:A (1.8) BS02 ZN 3.4.11.24 GO:0004177 ... P80561 11484227
    3334 1f2p:A (1.8) BS03 CA 3.4.11.24 GO:0004177 ... P80561 11484227
    3335 1f2s:E (1.79) BS02 CA 3.4.21.4 GO:0004175 ... P00760 10524768
    3336 1f2u:A (1.6) BS01 MG ? GO:0006302 ... P58301 10892749
    3337 1f2u:C (1.6) BS01 MG ? GO:0006302 ... P58301 10892749
    3338 1f2w:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11015219
    3339 1f30:A (2.85) BS01 ZN 1.16.-.- GO:0003677 ... P0ABT2 N/A
    3340 1f30:B (2.85) BS01 ZN 1.16.-.- GO:0003677 ... P0ABT2 N/A
    3341 1f30:E (2.85) BS01 ZN 1.16.-.- GO:0003677 ... P0ABT2 N/A
    3342 1f30:F (2.85) BS01 ZN 1.16.-.- GO:0003677 ... P0ABT2 N/A
    3343 1f30:G (2.85) BS01 ZN 1.16.-.- GO:0003677 ... P0ABT2 N/A
    3344 1f30:H (2.85) BS01 ZN 1.16.-.- GO:0003677 ... P0ABT2 N/A
    3345 1f30:I (2.85) BS01 ZN 1.16.-.- GO:0003677 ... P0ABT2 N/A
    3346 1f30:J (2.85) BS01 ZN 1.16.-.- GO:0003677 ... P0ABT2 N/A
    3347 1f31:A (2.6) BS03 ZN 3.4.24.69 GO:0004222 ... P10844 10932256
    3348 1f35:A (2.3) BS01 ZN ? GO:0005634 ... Q64288 12054872
    3349 1f35:A (2.3) BS02 ZN ? GO:0005634 ... Q64288 12054872
    3350 1f35:B (2.3) BS01 ZN ? GO:0005634 ... Q64288 12054872
    3351 1f35:B (2.3) BS02 ZN ? GO:0005634 ... Q64288 12054872
    3352 1f3e:A (1.85) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 11178905
    3353 1f3h:A (2.58) BS01 ZN ? GO:0000228 ... O15392 10876248
    3354 1f3h:B (2.58) BS01 ZN ? GO:0000228 ... O15392 10876248
    3355 1f3w:A (3.0) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 11563914
    3356 1f3w:B (3.0) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 11563914
    3357 1f3w:C (3.0) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 11563914
    3358 1f3w:D (3.0) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 11563914
    3359 1f3w:E (3.0) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 11563914
    3360 1f3w:F (3.0) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 11563914
    3361 1f3w:G (3.0) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 11563914
    3362 1f3w:H (3.0) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 11563914
    3363 1f3x:A (2.8) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 11563914
    3364 1f3x:B (2.8) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 11563914
    3365 1f3x:C (2.8) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 11563914
    3366 1f3x:D (2.8) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 11563914
    3367 1f3x:E (2.8) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 11563914
    3368 1f3x:F (2.8) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 11563914
    3369 1f3x:G (2.8) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 11563914
    3370 1f3x:H (2.8) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 11563914
    3371 1f3z:A (1.98) BS01 ZN 2.7.1.69 GO:0005515 ... P69783 9405042
    3372 1f48:A (2.3) BS01 SB 7.3.2.7 GO:0005524 ... P08690 10970874
    3373 1f48:A (2.3) BS02 SB 7.3.2.7 GO:0005524 ... P08690 10970874
    3374 1f48:A (2.3) BS03 SB 7.3.2.7 GO:0005524 ... P08690 10970874
    3375 1f48:A (2.3) BS04 MG 7.3.2.7 GO:0005524 ... P08690 10970874
    3376 1f4a:A (2.8) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    3377 1f4a:A (2.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    3378 1f4a:B (2.8) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    3379 1f4a:B (2.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    3380 1f4a:C (2.8) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    3381 1f4a:C (2.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    3382 1f4a:D (2.8) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    3383 1f4a:D (2.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    3384 1f4h:A (2.8) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    3385 1f4h:A (2.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    3386 1f4h:B (2.8) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    3387 1f4h:B (2.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    3388 1f4h:C (2.8) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    3389 1f4h:C (2.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    3390 1f4h:D (2.8) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    3391 1f4h:D (2.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    3392 1f4l:A (1.85) BS01 ZN 6.1.1.10 GO:0000166 ... P00959 11243794
    3393 1f4m:A (2.25) BS01 CA ? GO:0042802 ... P03051 11188696
    3394 1f4m:C (2.25) BS01 CA ? GO:0042802 ... P03051 11188696
    3395 1f4m:E (2.25) BS01 CA ? GO:0042802 ... P03051 11188696
    3396 1f4n:A (1.9) BS01 CA ? GO:0042802 ... P03051 11188696
    3397 1f4n:A (1.9) BS02 CA ? GO:0042802 ... P03051 11188696
    3398 1f4n:B (1.9) BS01 CA ? GO:0042802 ... P03051 11188696
    3399 1f4o:B (2.5) BS01 CA ? GO:0005509 ... P28676 10903868
    3400 1f4s:P (-1.00) BS03 ZN ? GO:0000981 ... P21228 11566132

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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