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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3001 1ekb:B (2.3) BS03 ZN 3.4.21.9 GO:0004252 ... P98072 10493881
    3002 1ekb:B (2.3) BS04 ZN 3.4.21.9 GO:0004252 ... P98072 10493881
    3003 1ekj:A (1.93) BS01 ZN 4.2.1.1 GO:0004089 ... P17067 10747009
    3004 1ekj:B (1.93) BS01 ZN 4.2.1.1 GO:0004089 ... P17067 10747009
    3005 1ekj:C (1.93) BS01 ZN 4.2.1.1 GO:0004089 ... P17067 10747009
    3006 1ekj:D (1.93) BS01 ZN 4.2.1.1 GO:0004089 ... P17067 10747009
    3007 1ekj:E (1.93) BS01 ZN 4.2.1.1 GO:0004089 ... P17067 10747009
    3008 1ekj:F (1.93) BS01 ZN 4.2.1.1 GO:0004089 ... P17067 10747009
    3009 1ekj:G (1.93) BS01 ZN 4.2.1.1 GO:0004089 ... P17067 10747009
    3010 1ekj:H (1.93) BS01 ZN 4.2.1.1 GO:0004089 ... P17067 10747009
    3011 1ekm:A (2.5) BS01 ZN 1.4.3.21 GO:0005507 ... P12807 10933787
    3012 1ekm:B (2.5) BS01 ZN 1.4.3.21 GO:0005507 ... P12807 10933787
    3013 1ekm:C (2.5) BS01 ZN 1.4.3.21 GO:0005507 ... P12807 10933787
    3014 1el1:A (1.9) BS01 CA 3.2.1.17 GO:0003796 ... P81708 N/A
    3015 1el1:B (1.9) BS01 CA 3.2.1.17 GO:0003796 ... P81708 N/A
    3016 1ela:A (2.0) BS02 CA 3.4.21.36 GO:0004252 ... P00772 7656008
    3017 1elb:A (2.1) BS02 CA 3.4.21.36 GO:0004252 ... P00772 7656008
    3018 1elc:A (1.75) BS02 CA 3.4.21.36 GO:0004252 ... P00772 7656008
    3019 1eld:E (2.0) BS02 CA 3.4.21.36 GO:0004252 ... P00772 7880814
    3020 1ele:E (2.0) BS02 CA 3.4.21.36 GO:0004252 ... P00772 7880814
    3021 1elf:A (1.7) BS01 CA 3.4.21.36 GO:0004252 ... P00772 7779821
    3022 1elg:A (1.65) BS01 CA 3.4.21.36 GO:0004252 ... P00772 7779821
    3023 1ell:P (1.76) BS01 CD 3.4.17.1 GO:0004181 ... P00730 11941507
    3024 1ell:P (1.76) BS02 CD 3.4.17.1 GO:0004181 ... P00730 11941507
    3025 1elm:P (2.0) BS01 CD 3.4.17.1 GO:0004181 ... P00730 11941507
    3026 1els:A (2.4) BS01 MN 4.2.1.11 GO:0000015 ... P00924 8193144
    3027 1els:A (2.4) BS02 MN 4.2.1.11 GO:0000015 ... P00924 8193144
    3028 1elt:A (1.61) BS01 CA 3.4.21.36 GO:0004252 ... Q7SIG3 15299762
    3029 1elx:A (2.6) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 9533886
    3030 1elx:A (2.6) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 9533886
    3031 1elx:A (2.6) BS03 MG 3.1.3.1 GO:0000287 ... P00634 9533886
    3032 1elx:B (2.6) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 9533886
    3033 1elx:B (2.6) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 9533886
    3034 1elx:B (2.6) BS03 MG 3.1.3.1 GO:0000287 ... P00634 9533886
    3035 1ely:A (2.8) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 9533886
    3036 1ely:A (2.8) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 9533886
    3037 1ely:A (2.8) BS03 MG 3.1.3.1 GO:0000287 ... P00634 9533886
    3038 1ely:B (2.8) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 9533886
    3039 1ely:B (2.8) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 9533886
    3040 1ely:B (2.8) BS03 MG 3.1.3.1 GO:0000287 ... P00634 9533886
    3041 1elz:A (2.8) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 9533886
    3042 1elz:A (2.8) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 9533886
    3043 1elz:A (2.8) BS03 MG 3.1.3.1 GO:0000287 ... P00634 9533886
    3044 1elz:B (2.8) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 9533886
    3045 1elz:B (2.8) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 9533886
    3046 1elz:B (2.8) BS03 MG 3.1.3.1 GO:0000287 ... P00634 9533886
    3047 1em1:A (2.13) BS01 MN 1.15.1.1 GO:0004784 ... P04179 10852710
    3048 1em1:B (2.13) BS01 MN 1.15.1.1 GO:0004784 ... P04179 10852710
    3049 1emn:A (-1.00) BS01 CA ? GO:0005509 ... P35555 8653794
    3050 1emn:A (-1.00) BS02 CA ? GO:0005509 ... P35555 8653794
    3051 1emo:A (-1.00) BS01 CA ? GO:0005509 ... P35555 8653794
    3052 1emo:A (-1.00) BS02 CA ? GO:0005509 ... P35555 8653794
    3053 1en4:A (2.0) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11141052
    3054 1en4:B (2.0) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11141052
    3055 1en4:C (2.0) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11141052
    3056 1en4:D (2.0) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11141052
    3057 1en5:A (2.3) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11141052
    3058 1en5:B (2.3) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11141052
    3059 1en5:C (2.3) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11141052
    3060 1en5:D (2.3) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11141052
    3061 1en6:A (2.0) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11141052
    3062 1en6:B (2.0) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11141052
    3063 1en6:C (2.0) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11141052
    3064 1en6:D (2.0) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11141052
    3065 1en7:A (2.4) BS01 ZN 3.1.-.- GO:0004519 ... P13340 10075917
    3066 1en7:A (2.4) BS02 CA 3.1.-.- GO:0004519 ... P13340 10075917
    3067 1en7:B (2.4) BS01 ZN 3.1.-.- GO:0004519 ... P13340 10075917
    3068 1en7:B (2.4) BS02 CA 3.1.-.- GO:0004519 ... P13340 10075917
    3069 1en7:B (2.4) BS03 CA 3.1.-.- GO:0004519 ... P13340 10075917
    3070 1ena:A (2.15) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8025105
    3071 1enc:A (1.95) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8025105
    3072 1enq:A (2.5) BS01 ZN ? GO:0030246 ... P02866 8663112
    3073 1enq:B (2.5) BS01 ZN ? GO:0030246 ... P02866 8663112
    3074 1enq:C (2.5) BS01 ZN ? GO:0030246 ... P02866 8663112
    3075 1enq:D (2.5) BS01 ZN ? GO:0030246 ... P02866 8663112
    3076 1enr:A (1.83) BS01 CA ? GO:0030246 ... P02866 8663112
    3077 1enr:A (1.83) BS02 ZN ? GO:0030246 ... P02866 8663112
    3078 1ens:A (2.8) BS01 CO ? GO:0030246 ... P02866 8663112
    3079 1ens:B (2.8) BS01 CO ? GO:0030246 ... P02866 8663112
    3080 1enu:A (1.95) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 11178905
    3081 1eo2:B (2.25) BS01 FE 1.13.11.3 GO:0003824 ... P20372 10891075
    3082 1eo3:A (2.0) BS03 MG 3.1.21.4 GO:0003677 ... P04390 N/A
    3083 1eo3:A (2.0) BS04 MG 3.1.21.4 GO:0003677 ... P04390 N/A
    3084 1eo3:B (2.0) BS03 MG 3.1.21.4 GO:0003677 ... P04390 N/A
    3085 1eo3:B (2.0) BS04 MG 3.1.21.4 GO:0003677 ... P04390 N/A
    3086 1eo4:A (1.9) BS03 MN 3.1.21.4 GO:0003677 ... P04390 N/A
    3087 1eo4:A (1.9) BS04 MN 3.1.21.4 GO:0003677 ... P04390 N/A
    3088 1eo4:A (1.9) BS05 MN 3.1.21.4 GO:0003677 ... P04390 N/A
    3089 1eo5:A (2.0) BS13 CA 2.4.1.19 GO:0003824 ... P43379 10869182
    3090 1eo5:A (2.0) BS14 CA 2.4.1.19 GO:0003824 ... P43379 10869182
    3091 1eo5:A (2.0) BS15 CA 2.4.1.19 GO:0003824 ... P43379 10869182
    3092 1eo7:A (2.48) BS11 CA 2.4.1.19 GO:0003824 ... P43379 10869182
    3093 1eo7:A (2.48) BS12 CA 2.4.1.19 GO:0003824 ... P43379 10869182
    3094 1eo7:A (2.48) BS13 CA 2.4.1.19 GO:0003824 ... P43379 10869182
    3095 1eo9:B (2.0) BS01 FE 1.13.11.3 GO:0003824 ... P20372 10891075
    3096 1eoa:B (2.15) BS01 FE 1.13.11.3 GO:0003824 ... P20372 10891075
    3097 1eob:B (2.2) BS01 FE 1.13.11.3 GO:0003824 ... P20372 10891075
    3098 1eoc:B (2.25) BS01 FE 1.13.11.3 GO:0003824 ... P20372 10891075
    3099 1eou:A (2.1) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11802772
    3100 1ept:B (1.8) BS01 CA 3.4.21.4 GO:0004252 ... P00761 7947985
    3101 1epw:A (1.9) BS01 ZN 3.4.24.69 GO:0004222 ... P10844 10932256
    3102 1epy:A (1.85) BS01 CO 3.2.1.17 GO:0003796 ... P00720 10835104
    3103 1eqj:A (1.7) BS01 MN 5.4.2.12 GO:0003824 ... Q9X519 10764795
    3104 1eqj:A (1.7) BS02 MN 5.4.2.12 GO:0003824 ... Q9X519 10764795
    3105 1eqm:A (1.5) BS01 MG 2.7.6.3 GO:0000287 ... P26281 11546767
    3106 1eqw:A (2.3) BS01 ZN 1.15.1.1 GO:0004784 ... P0CW86 10970746
    3107 1eqw:A (2.3) BS02 CU 1.15.1.1 GO:0004784 ... P0CW86 10970746
    3108 1eqw:B (2.3) BS01 ZN 1.15.1.1 GO:0004784 ... P0CW86 10970746
    3109 1eqw:B (2.3) BS02 CU 1.15.1.1 GO:0004784 ... P0CW86 10970746
    3110 1eqw:C (2.3) BS01 ZN 1.15.1.1 GO:0004784 ... P0CW86 10970746
    3111 1eqw:C (2.3) BS02 CU 1.15.1.1 GO:0004784 ... P0CW86 10970746
    3112 1eqw:D (2.3) BS01 ZN 1.15.1.1 GO:0004784 ... P0CW86 10970746
    3113 1eqw:D (2.3) BS02 CU 1.15.1.1 GO:0004784 ... P0CW86 10970746
    3114 1eqy:S (2.3) BS01 CA ? GO:0051015 ... P06396 8395021
    3115 1eqy:S (2.3) BS02 CA ? GO:0051015 ... P06396 8395021
    3116 1esa:A (1.65) BS01 CA 3.4.21.36 GO:0004252 ... P00772 8049229
    3117 1esb:A (2.3) BS02 CA 3.4.21.36 GO:0004252 ... P00772 8049229
    3118 1esk:A (-1.00) BS01 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P04585 N/A
    3119 1esk:A (-1.00) BS02 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P04585 N/A
    3120 1esl:A (2.0) BS01 CA ? N/A P16581 7509040
    3121 1esl:A (2.0) BS02 CA ? N/A P16581 7509040
    3122 1esl:A (2.0) BS03 CA ? N/A P16581 7509040
    3123 1esn:A (2.6) BS01 MG 2.7.1.33 GO:0004594 ... P0A6I3 10862768
    3124 1eso:A (2.0) BS01 ZN 1.15.1.1 GO:0004784 ... P0AGD1 9405149
    3125 1eso:A (2.0) BS02 CU 1.15.1.1 GO:0004784 ... P0AGD1 9405149
    3126 1esp:A (2.8) BS01 CA 3.4.24.28 GO:0004222 ... P05806 15299677
    3127 1esp:A (2.8) BS02 CA 3.4.24.28 GO:0004222 ... P05806 15299677
    3128 1esp:A (2.8) BS03 CA 3.4.24.28 GO:0004222 ... P05806 15299677
    3129 1esp:A (2.8) BS04 CA 3.4.24.28 GO:0004222 ... P05806 15299677
    3130 1esp:A (2.8) BS05 ZN 3.4.24.28 GO:0004222 ... P05806 15299677
    3131 1esv:S (2.0) BS01 CA ? GO:0051015 ... P06396 10854330
    3132 1esv:S (2.0) BS02 CA ? GO:0051015 ... P06396 10854330
    3133 1et5:A (1.9) BS01 CU 1.7.2.1 GO:0005507 ... P38501 10811642
    3134 1et5:A (1.9) BS02 CU 1.7.2.1 GO:0005507 ... P38501 10811642
    3135 1et7:A (1.7) BS01 CU 1.7.2.1 GO:0005507 ... P38501 10811642
    3136 1et7:A (1.7) BS02 CU 1.7.2.1 GO:0005507 ... P38501 10811642
    3137 1et8:A (1.8) BS01 CU 1.7.2.1 GO:0005507 ... P38501 10811642
    3138 1et8:A (1.8) BS02 CU 1.7.2.1 GO:0005507 ... P38501 10811642
    3139 1ete:A (2.2) BS01 ZN ? GO:0005125 ... P49771 10881197
    3140 1ete:B (2.2) BS01 ZN ? GO:0005125 ... P49771 10881197
    3141 1ete:B (2.2) BS02 ZN ? GO:0005125 ... P49771 10881197
    3142 1ete:C (2.2) BS01 ZN ? GO:0005125 ... P49771 10881197
    3143 1ete:C (2.2) BS02 ZN ? GO:0005125 ... P49771 10881197
    3144 1eth:A (2.8) BS02 CA 3.1.1.3 GO:0004806 ... P00591 8663362
    3145 1eth:C (2.8) BS02 CA 3.1.1.3 GO:0004806 ... P00591 8663362
    3146 1etj:A (2.3) BS01 CU ? GO:0005507 ... P00282 9100002
    3147 1etj:B (2.3) BS01 CU ? GO:0005507 ... P00282 9100002
    3148 1etj:C (2.3) BS01 CU ? GO:0005507 ... P00282 9100002
    3149 1etj:D (2.3) BS01 CU ? GO:0005507 ... P00282 9100002
    3150 1eu3:A (1.68) BS01 ZN ? GO:0005576 ... Q9RQQ5 10860729
    3151 1eu3:B (1.68) BS01 ZN ? GO:0005576 ... Q9RQQ5 10860729
    3152 1eu4:A (2.5) BS01 ZN ? GO:0005576 ... P0C0I6 10860729
    3153 1eub:A (-1.00) BS01 ZN 3.4.24.- GO:0004222 ... P45452 10926524
    3154 1eub:A (-1.00) BS02 ZN 3.4.24.- GO:0004222 ... P45452 10926524
    3155 1eub:A (-1.00) BS03 CA 3.4.24.- GO:0004222 ... P45452 10926524
    3156 1eub:A (-1.00) BS04 CA 3.4.24.- GO:0004222 ... P45452 10926524
    3157 1evk:A (2.0) BS01 ZN 6.1.1.3 GO:0000166 ... P0A8M3 10881191
    3158 1evk:B (2.0) BS01 ZN 6.1.1.3 GO:0000166 ... P0A8M3 10881191
    3159 1evl:A (1.55) BS01 ZN 6.1.1.3 GO:0000166 ... P0A8M3 10881191
    3160 1evl:B (1.55) BS01 ZN 6.1.1.3 GO:0000166 ... P0A8M3 10881191
    3161 1evl:C (1.55) BS01 ZN 6.1.1.3 GO:0000166 ... P0A8M3 10881191
    3162 1evl:D (1.55) BS01 ZN 6.1.1.3 GO:0000166 ... P0A8M3 10881191
    3163 1evw:A (3.1) BS03 ZN 3.1.-.- GO:0004519 ... Q94702 10891275
    3164 1evw:A (3.1) BS04 ZN 3.1.-.- GO:0004519 ... Q94702 10891275
    3165 1evw:B (3.1) BS03 ZN 3.1.-.- GO:0004519 ... Q94702 10891275
    3166 1evw:B (3.1) BS04 ZN 3.1.-.- GO:0004519 ... Q94702 10891275
    3167 1evw:B (3.1) BS05 MG 3.1.-.- GO:0004519 ... Q94702 10891275
    3168 1evw:C (3.1) BS03 MG 3.1.-.- GO:0004519 ... Q94702 10891275
    3169 1evw:C (3.1) BS04 ZN 3.1.-.- GO:0004519 ... Q94702 10891275
    3170 1evw:C (3.1) BS05 ZN 3.1.-.- GO:0004519 ... Q94702 10891275
    3171 1evw:D (3.1) BS03 ZN 3.1.-.- GO:0004519 ... Q94702 10891275
    3172 1evw:D (3.1) BS04 ZN 3.1.-.- GO:0004519 ... Q94702 10891275
    3173 1evx:A (2.0) BS01 ZN 3.1.-.- GO:0004519 ... Q94702 10891275
    3174 1evx:A (2.0) BS02 ZN 3.1.-.- GO:0004519 ... Q94702 10891275
    3175 1evx:B (2.0) BS01 ZN 3.1.-.- GO:0004519 ... Q94702 10891275
    3176 1evx:B (2.0) BS02 ZN 3.1.-.- GO:0004519 ... Q94702 10891275
    3177 1ew2:A (1.82) BS01 ZN 3.1.3.1 GO:0000287 ... P05187 11124260
    3178 1ew2:A (1.82) BS02 ZN 3.1.3.1 GO:0000287 ... P05187 11124260
    3179 1ew2:A (1.82) BS03 MG 3.1.3.1 GO:0000287 ... P05187 11124260
    3180 1ew2:A (1.82) BS04 MG 3.1.3.1 GO:0000287 ... P05187 11124260
    3181 1ew8:A (2.2) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 10850800
    3182 1ew8:A (2.2) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 10850800
    3183 1ew8:A (2.2) BS04 MG 3.1.3.1 GO:0000287 ... P00634 10850800
    3184 1ew8:A (2.2) BS05 ZN 3.1.3.1 GO:0000287 ... P00634 10850800
    3185 1ew8:B (2.2) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 10850800
    3186 1ew8:B (2.2) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 10850800
    3187 1ew8:B (2.2) BS04 MG 3.1.3.1 GO:0000287 ... P00634 10850800
    3188 1ew8:B (2.2) BS05 ZN 3.1.3.1 GO:0000287 ... P00634 10850800
    3189 1ew9:A (2.0) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 10850800
    3190 1ew9:A (2.0) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 10850800
    3191 1ew9:A (2.0) BS03 MG 3.1.3.1 GO:0000287 ... P00634 10850800
    3192 1ew9:A (2.0) BS04 ZN 3.1.3.1 GO:0000287 ... P00634 10850800
    3193 1ew9:B (2.0) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 10850800
    3194 1ew9:B (2.0) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 10850800
    3195 1ew9:B (2.0) BS03 MG 3.1.3.1 GO:0000287 ... P00634 10850800
    3196 1ew9:B (2.0) BS04 ZN 3.1.3.1 GO:0000287 ... P00634 10850800
    3197 1ewc:A (1.95) BS01 ZN ? GO:0005576 ... P0A0M0 10986116
    3198 1ewk:A (2.2) BS01 MG ? GO:0004930 ... P23385 11069170
    3199 1ewk:B (2.2) BS01 MG ? GO:0004930 ... P23385 11069170
    3200 1ex0:A (2.0) BS01 CA 2.3.2.13 GO:0003810 ... P00488 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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