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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 45686 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    DNA
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    44501 8wpf:A
    (3.0)
    BS02 >8wpf:I
    cacgaattaagcaattcgtaatcatggtcatagctcccgcg
    2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    44502 8wpf:B
    (3.0)
    BS01 >8wpf:I
    cacgaattaagcaattcgtaatcatggtcatagctcccgcg
    ? GO:0006260 ... A0A7H0DNC0 37995690
    44503 8wpf:C
    (3.0)
    BS01 >8wpf:I
    cacgaattaagcaattcgtaatcatggtcatagctcccgcg
    3.2.2.27 GO:0003677 ... M1LL92 37995690
    44504 8wpf:E
    (3.0)
    BS01 >8wpf:H (identical to 8wpe:H, 8wpk:H, 8wpp:H)
    cgcgggagctatgaccatgattacgaattgc
    ? GO:0019031 ... A0A7H0DN82 37995690
    44505 8wpk:A
    (2.7)
    BS01 >8wpk:H (identical to 8wpe:H, 8wpf:H, 8wpp:H)
    cgcgggagctatgaccatgattacgaattgc
    2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    44506 8wpk:A
    (2.7)
    BS02 >8wpk:I (identical to 8wpp:I)
    gaattaagcaattcgtaatcatggtcatagctcccgcg
    2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    44507 8wpk:B
    (2.7)
    BS01 >8wpk:I (identical to 8wpp:I)
    gaattaagcaattcgtaatcatggtcatagctcccgcg
    ? GO:0006260 ... A0A7H0DNC0 37995690
    44508 8wpk:C
    (2.7)
    BS01 >8wpk:I (identical to 8wpp:I)
    gaattaagcaattcgtaatcatggtcatagctcccgcg
    3.2.2.27 GO:0003677 ... M1LL92 37995690
    44509 8wpk:E
    (2.7)
    BS01 >8wpk:H (identical to 8wpe:H, 8wpf:H, 8wpp:H)
    cgcgggagctatgaccatgattacgaattgc
    ? GO:0019031 ... A0A7H0DN82 37995690
    44510 8wpp:A
    (3.1)
    BS01 >8wpp:H (identical to 8wpe:H, 8wpf:H, 8wpk:H)
    cgcgggagctatgaccatgattacgaattgc
    2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    44511 8wpp:A
    (3.1)
    BS02 >8wpp:I (identical to 8wpk:I)
    gaattaagcaattcgtaatcatggtcatagctcccgcg
    2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    44512 8wpp:B
    (3.1)
    BS01 >8wpp:I (identical to 8wpk:I)
    gaattaagcaattcgtaatcatggtcatagctcccgcg
    ? GO:0006260 ... A0A7H0DNC0 37995690
    44513 8wpp:C
    (3.1)
    BS01 >8wpp:I (identical to 8wpk:I)
    gaattaagcaattcgtaatcatggtcatagctcccgcg
    3.2.2.27 GO:0003677 ... M1LL92 37995690
    44514 8wpp:E
    (3.1)
    BS01 >8wpp:H (identical to 8wpe:H, 8wpf:H, 8wpk:H)
    cgcgggagctatgaccatgattacgaattgc
    ? GO:0019031 ... A0A7H0DN82 37995690
    44515 8wpp:E
    (3.1)
    BS02 >8wpp:I (identical to 8wpk:I)
    gaattaagcaattcgtaatcatggtcatagctcccgcg
    ? GO:0019031 ... A0A7H0DN82 37995690
    44516 8wq5:A
    (1.65)
    BS01 >8wq5:E (identical to 8wq5:F, 8wq5:G, 8wq5:H)
    gacgca
    N/A N/A Q8IUH3 39122006
    44517 8wq5:B
    (1.65)
    BS01 >8wq5:F (identical to 8wq5:E, 8wq5:G, 8wq5:H)
    gacgca
    N/A N/A Q8IUH3 39122006
    44518 8wq5:C
    (1.65)
    BS01 >8wq5:G (identical to 8wq5:E, 8wq5:F, 8wq5:H)
    gacgca
    N/A N/A Q8IUH3 39122006
    44519 8wq5:D
    (1.65)
    BS01 >8wq5:H (identical to 8wq5:E, 8wq5:F, 8wq5:G)
    gacgca
    N/A N/A Q8IUH3 39122006
    44520 8wr4:A
    (3.07)
    BS01 >8wr4:F
    agctatctctcctcggctccccgacattctctggcatccttcc
    N/A N/A N/A 38811729
    44521 8wr4:A
    (3.07)
    BS03 >8wr4:S
    tgccagagaatgtcggggagccgaggagagatagct
    N/A N/A N/A 38811729
    44522 8wr4:B
    (3.07)
    BS01 >8wr4:F
    agctatctctcctcggctccccgacattctctggcatccttcc
    N/A N/A N/A 38811729
    44523 8wt6:A
    (2.5)
    BS03 >8wt6:G
    taccaccaagttctacagatgagct
    N/A N/A A0A2X3M8B0 38926616
    44524 8wt6:A
    (2.5)
    BS04 >8wt6:H
    agctcatctgtaggcctgatggtggta
    N/A N/A A0A2X3M8B0 38926616
    44525 8wt6:B
    (2.5)
    BS03 >8wt6:G
    taccaccaagttctacagatgagct
    N/A N/A A0A2X3M8B0 38926616
    44526 8wt6:B
    (2.5)
    BS04 >8wt6:H
    agctcatctgtaggcctgatggtggta
    N/A N/A A0A2X3M8B0 38926616
    44527 8wt6:B
    (2.5)
    BS05 >8wt6:I
    ggccataagacttgtattatccctc
    N/A N/A A0A2X3M8B0 38926616
    44528 8wt6:B
    (2.5)
    BS06 >8wt6:J (identical to 8wt7:J, 8wt8:J, 8wt9:J)
    gagggataatacaagatactgttatggcc
    N/A N/A A0A2X3M8B0 38926616
    44529 8wt6:C
    (2.5)
    BS03 >8wt6:I
    ggccataagacttgtattatccctc
    N/A N/A A0A2X3M8B0 38926616
    44530 8wt6:C
    (2.5)
    BS04 >8wt6:J (identical to 8wt7:J, 8wt8:J, 8wt9:J)
    gagggataatacaagatactgttatggcc
    N/A N/A A0A2X3M8B0 38926616
    44531 8wt6:D
    (2.5)
    BS03 >8wt6:G
    taccaccaagttctacagatgagct
    N/A N/A A0A2X3M8B0 38926616
    44532 8wt6:D
    (2.5)
    BS04 >8wt6:H
    agctcatctgtaggcctgatggtggta
    N/A N/A A0A2X3M8B0 38926616
    44533 8wt6:D
    (2.5)
    BS05 >8wt6:I
    ggccataagacttgtattatccctc
    N/A N/A A0A2X3M8B0 38926616
    44534 8wt6:D
    (2.5)
    BS06 >8wt6:J (identical to 8wt7:J, 8wt8:J, 8wt9:J)
    gagggataatacaagatactgttatggcc
    N/A N/A A0A2X3M8B0 38926616
    44535 8wt7:A
    (2.7)
    BS03 >8wt7:G
    taccaccaagccgcctacagatgagct
    N/A N/A A0A2X3M8B0 38926616
    44536 8wt7:A
    (2.7)
    BS04 >8wt7:H (identical to 8wt8:H, 8wt9:H)
    agctcatctgtaggcccgatggtggta
    N/A N/A A0A2X3M8B0 38926616
    44537 8wt7:B
    (2.7)
    BS03 >8wt7:G
    taccaccaagccgcctacagatgagct
    N/A N/A A0A2X3M8B0 38926616
    44538 8wt7:B
    (2.7)
    BS04 >8wt7:H (identical to 8wt8:H, 8wt9:H)
    agctcatctgtaggcccgatggtggta
    N/A N/A A0A2X3M8B0 38926616
    44539 8wt7:B
    (2.7)
    BS05 >8wt7:I
    ggccataagtcaatcttgtattatccctc
    N/A N/A A0A2X3M8B0 38926616
    44540 8wt7:C
    (2.7)
    BS03 >8wt7:I
    ggccataagtcaatcttgtattatccctc
    N/A N/A A0A2X3M8B0 38926616
    44541 8wt7:C
    (2.7)
    BS04 >8wt7:J (identical to 8wt6:J, 8wt8:J, 8wt9:J)
    gagggataatacaagatactgttatggcc
    N/A N/A A0A2X3M8B0 38926616
    44542 8wt7:D
    (2.7)
    BS03 >8wt7:G
    taccaccaagccgcctacagatgagct
    N/A N/A A0A2X3M8B0 38926616
    44543 8wt7:D
    (2.7)
    BS04 >8wt7:I
    ggccataagtcaatcttgtattatccctc
    N/A N/A A0A2X3M8B0 38926616
    44544 8wt7:D
    (2.7)
    BS05 >8wt7:J (identical to 8wt6:J, 8wt8:J, 8wt9:J)
    gagggataatacaagatactgttatggcc
    N/A N/A A0A2X3M8B0 38926616
    44545 8wt8:A
    (2.9)
    BS03 >8wt8:G (identical to 8wt9:G)
    taccaccaagccgccttgtattatccctc
    N/A N/A A0A2X3M8B0 38926616
    44546 8wt8:A
    (2.9)
    BS04 >8wt8:H (identical to 8wt7:H, 8wt9:H)
    agctcatctgtaggcccgatggtggta
    N/A N/A A0A2X3M8B0 38926616
    44547 8wt8:A
    (2.9)
    BS05 >8wt8:I (identical to 8wt9:I)
    ggccataagtcaatctacagatgagct
    N/A N/A A0A2X3M8B0 38926616
    44548 8wt8:B
    (2.9)
    BS03 >8wt8:H (identical to 8wt7:H, 8wt9:H)
    agctcatctgtaggcccgatggtggta
    N/A N/A A0A2X3M8B0 38926616
    44549 8wt8:B
    (2.9)
    BS04 >8wt8:I (identical to 8wt9:I)
    ggccataagtcaatctacagatgagct
    N/A N/A A0A2X3M8B0 38926616
    44550 8wt8:C
    (2.9)
    BS03 >8wt8:G (identical to 8wt9:G)
    taccaccaagccgccttgtattatccctc
    N/A N/A A0A2X3M8B0 38926616
    44551 8wt8:C
    (2.9)
    BS04 >8wt8:I (identical to 8wt9:I)
    ggccataagtcaatctacagatgagct
    N/A N/A A0A2X3M8B0 38926616
    44552 8wt8:C
    (2.9)
    BS05 >8wt8:J (identical to 8wt6:J, 8wt7:J, 8wt9:J)
    gagggataatacaagatactgttatggcc
    N/A N/A A0A2X3M8B0 38926616
    44553 8wt8:D
    (2.9)
    BS02 >8wt8:G (identical to 8wt9:G)
    taccaccaagccgccttgtattatccctc
    N/A N/A A0A2X3M8B0 38926616
    44554 8wt8:D
    (2.9)
    BS03 >8wt8:H (identical to 8wt7:H, 8wt9:H)
    agctcatctgtaggcccgatggtggta
    N/A N/A A0A2X3M8B0 38926616
    44555 8wt8:D
    (2.9)
    BS04 >8wt8:I (identical to 8wt9:I)
    ggccataagtcaatctacagatgagct
    N/A N/A A0A2X3M8B0 38926616
    44556 8wt8:D
    (2.9)
    BS05 >8wt8:J (identical to 8wt6:J, 8wt7:J, 8wt9:J)
    gagggataatacaagatactgttatggcc
    N/A N/A A0A2X3M8B0 38926616
    44557 8wt9:A
    (2.7)
    BS03 >8wt9:G (identical to 8wt8:G)
    taccaccaagccgccttgtattatccctc
    N/A N/A A0A2X3M8B0 38926616
    44558 8wt9:A
    (2.7)
    BS04 >8wt9:H (identical to 8wt7:H, 8wt8:H)
    agctcatctgtaggcccgatggtggta
    N/A N/A A0A2X3M8B0 38926616
    44559 8wt9:A
    (2.7)
    BS05 >8wt9:I (identical to 8wt8:I)
    ggccataagtcaatctacagatgagct
    N/A N/A A0A2X3M8B0 38926616
    44560 8wt9:A
    (2.7)
    BS06 >8wt9:J (identical to 8wt6:J, 8wt7:J, 8wt8:J)
    gagggataatacaagatactgttatggcc
    N/A N/A A0A2X3M8B0 38926616
    44561 8wt9:B
    (2.7)
    BS03 >8wt9:H (identical to 8wt7:H, 8wt8:H)
    agctcatctgtaggcccgatggtggta
    N/A N/A A0A2X3M8B0 38926616
    44562 8wt9:B
    (2.7)
    BS04 >8wt9:I (identical to 8wt8:I)
    ggccataagtcaatctacagatgagct
    N/A N/A A0A2X3M8B0 38926616
    44563 8wt9:C
    (2.7)
    BS03 >8wt9:G (identical to 8wt8:G)
    taccaccaagccgccttgtattatccctc
    N/A N/A A0A2X3M8B0 38926616
    44564 8wt9:C
    (2.7)
    BS04 >8wt9:H (identical to 8wt7:H, 8wt8:H)
    agctcatctgtaggcccgatggtggta
    N/A N/A A0A2X3M8B0 38926616
    44565 8wt9:C
    (2.7)
    BS05 >8wt9:I (identical to 8wt8:I)
    ggccataagtcaatctacagatgagct
    N/A N/A A0A2X3M8B0 38926616
    44566 8wt9:C
    (2.7)
    BS06 >8wt9:J (identical to 8wt6:J, 8wt7:J, 8wt8:J)
    gagggataatacaagatactgttatggcc
    N/A N/A A0A2X3M8B0 38926616
    44567 8wt9:D
    (2.7)
    BS03 >8wt9:G (identical to 8wt8:G)
    taccaccaagccgccttgtattatccctc
    N/A N/A A0A2X3M8B0 38926616
    44568 8wt9:D
    (2.7)
    BS04 >8wt9:J (identical to 8wt6:J, 8wt7:J, 8wt8:J)
    gagggataatacaagatactgttatggcc
    N/A N/A A0A2X3M8B0 38926616
    44569 8wus:A
    (2.9)
    BS01 >8wus:C (identical to 8wuu:C, 8wuv:C)
    tagtactctgccatcagagcaagcactacggccgattg
    3.1.-.- GO:0003677 ... Q99ZW2 38811740
    44570 8wus:A
    (2.9)
    BS02 >8wus:D (identical to 8wut:D, 8wuu:D, 8wuv:D)
    gatggcagagtacta
    3.1.-.- GO:0003677 ... Q99ZW2 38811740
    44571 8wus:E
    (2.9)
    BS02 >8wus:F
    caatccagactgagcacgctgtga
    ? N/A Q8UN00 38811740
    44572 8wut:A
    (3.0)
    BS01 >8wut:C (identical to 8ygj:C)
    tagtactctgccatcagagcaagcactacggccgattgctc
    3.1.-.- GO:0003677 ... Q99ZW2 38811740
    44573 8wut:A
    (3.0)
    BS02 >8wut:D (identical to 8wus:D, 8wuu:D, 8wuv:D)
    gatggcagagtacta
    3.1.-.- GO:0003677 ... Q99ZW2 38811740
    44574 8wut:E
    (3.0)
    BS02 >8wut:F
    gagcaatccagactgagcacga
    ? N/A Q8UN00 38811740
    44575 8wuu:A
    (3.2)
    BS01 >8wuu:C (identical to 8wus:C, 8wuv:C)
    tagtactctgccatcagagcaagcactacggccgattg
    3.1.-.- GO:0003677 ... Q99ZW2 38811740
    44576 8wuu:A
    (3.2)
    BS02 >8wuu:D (identical to 8wus:D, 8wut:D, 8wuv:D)
    gatggcagagtacta
    3.1.-.- GO:0003677 ... Q99ZW2 38811740
    44577 8wuv:A
    (3.0)
    BS01 >8wuv:C (identical to 8wus:C, 8wuu:C)
    tagtactctgccatcagagcaagcactacggccgattg
    3.1.-.- GO:0003677 ... Q99ZW2 38811740
    44578 8wuv:A
    (3.0)
    BS02 >8wuv:D (identical to 8wus:D, 8wut:D, 8wuu:D)
    gatggcagagtacta
    3.1.-.- GO:0003677 ... Q99ZW2 38811740
    44579 8wuv:E
    (3.0)
    BS02 >8wuv:F
    caatccagactgagcacgctgtggtttggttgca
    ? N/A Q8UN00 38811740
    44580 8wy5:A
    (3.12)
    BS01 >8wy5:E (identical to 8wy5:G)
    ttaataacccggttatttt
    3.1.-.- GO:0004519 ... J8H9C1 38471529
    44581 8wy5:A
    (3.12)
    BS02 >8wy5:F (identical to 8wy5:H)
    aaaataaccgggttattaa
    3.1.-.- GO:0004519 ... J8H9C1 38471529
    44582 8wy5:B
    (3.12)
    BS01 >8wy5:E (identical to 8wy5:G)
    ttaataacccggttatttt
    3.1.-.- GO:0004519 ... J8H9C1 38471529
    44583 8wy5:B
    (3.12)
    BS02 >8wy5:F (identical to 8wy5:H)
    aaaataaccgggttattaa
    3.1.-.- GO:0004519 ... J8H9C1 38471529
    44584 8wy5:C
    (3.12)
    BS01 >8wy5:G (identical to 8wy5:E)
    ttaataacccggttatttt
    3.1.-.- GO:0004519 ... J8H9C1 38471529
    44585 8wy5:C
    (3.12)
    BS02 >8wy5:H (identical to 8wy5:F)
    aaaataaccgggttattaa
    3.1.-.- GO:0004519 ... J8H9C1 38471529
    44586 8wy5:D
    (3.12)
    BS01 >8wy5:G (identical to 8wy5:E)
    ttaataacccggttatttt
    3.1.-.- GO:0004519 ... J8H9C1 38471529
    44587 8wy5:D
    (3.12)
    BS02 >8wy5:H (identical to 8wy5:F)
    aaaataaccgggttattaa
    3.1.-.- GO:0004519 ... J8H9C1 38471529
    44588 8x15:A
    (3.2)
    BS01 >8x15:X
    caggatgtatatatgtgacacgtgcctggagactagggagtaatcccctt
    ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
    agctgtctacgaccaattgagcggcctcggcaccggg
    ? GO:0000786 ... Q93077 38331872
    44589 8x15:A
    (3.2)
    BS02 >8x15:Y
    cccggtgccgaggccgctcaattggtcgtagacagctctagcaccgctta
    aacgcacgtacgcgctgtcccccgcgttttaaccgccaaggggattactc
    cctagtctccaggcacgtgtcacatatatacatcctg
    ? GO:0000786 ... Q93077 38331872
    44590 8x15:B
    (3.2)
    BS01 >8x15:X
    caggatgtatatatgtgacacgtgcctggagactagggagtaatcccctt
    ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
    agctgtctacgaccaattgagcggcctcggcaccggg
    ? GO:0000786 ... P62807 38331872
    44591 8x15:B
    (3.2)
    BS02 >8x15:Y
    cccggtgccgaggccgctcaattggtcgtagacagctctagcaccgctta
    aacgcacgtacgcgctgtcccccgcgttttaaccgccaaggggattactc
    cctagtctccaggcacgtgtcacatatatacatcctg
    ? GO:0000786 ... P62807 38331872
    44592 8x15:C
    (3.2)
    BS01 >8x15:X
    caggatgtatatatgtgacacgtgcctggagactagggagtaatcccctt
    ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
    agctgtctacgaccaattgagcggcctcggcaccggg
    ? GO:0000786 ... P68431 38331872
    44593 8x15:C
    (3.2)
    BS02 >8x15:Y
    cccggtgccgaggccgctcaattggtcgtagacagctctagcaccgctta
    aacgcacgtacgcgctgtcccccgcgttttaaccgccaaggggattactc
    cctagtctccaggcacgtgtcacatatatacatcctg
    ? GO:0000786 ... P68431 38331872
    44594 8x15:D
    (3.2)
    BS01 >8x15:X
    caggatgtatatatgtgacacgtgcctggagactagggagtaatcccctt
    ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
    agctgtctacgaccaattgagcggcctcggcaccggg
    ? GO:0000781 ... P62805 38331872
    44595 8x15:E
    (3.2)
    BS01 >8x15:X
    caggatgtatatatgtgacacgtgcctggagactagggagtaatcccctt
    ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
    agctgtctacgaccaattgagcggcctcggcaccggg
    ? GO:0000786 ... Q93077 38331872
    44596 8x15:E
    (3.2)
    BS02 >8x15:Y
    cccggtgccgaggccgctcaattggtcgtagacagctctagcaccgctta
    aacgcacgtacgcgctgtcccccgcgttttaaccgccaaggggattactc
    cctagtctccaggcacgtgtcacatatatacatcctg
    ? GO:0000786 ... Q93077 38331872
    44597 8x15:F
    (3.2)
    BS01 >8x15:X
    caggatgtatatatgtgacacgtgcctggagactagggagtaatcccctt
    ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
    agctgtctacgaccaattgagcggcctcggcaccggg
    ? GO:0000786 ... P62807 38331872
    44598 8x15:F
    (3.2)
    BS02 >8x15:Y
    cccggtgccgaggccgctcaattggtcgtagacagctctagcaccgctta
    aacgcacgtacgcgctgtcccccgcgttttaaccgccaaggggattactc
    cctagtctccaggcacgtgtcacatatatacatcctg
    ? GO:0000786 ... P62807 38331872
    44599 8x15:G
    (3.2)
    BS01 >8x15:X
    caggatgtatatatgtgacacgtgcctggagactagggagtaatcccctt
    ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
    agctgtctacgaccaattgagcggcctcggcaccggg
    ? GO:0000786 ... P68431 38331872
    44600 8x15:G
    (3.2)
    BS02 >8x15:Y
    cccggtgccgaggccgctcaattggtcgtagacagctctagcaccgctta
    aacgcacgtacgcgctgtcccccgcgttttaaccgccaaggggattactc
    cctagtctccaggcacgtgtcacatatatacatcctg
    ? GO:0000786 ... P68431 38331872

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218